LOCUS       NM_001399357            2627 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus CDKN1A interacting zinc finger protein 1 (Ciz1),
            transcript variant 1, mRNA.
ACCESSION   NM_001399357 XM_039104760
VERSION     NM_001399357.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2627)
  AUTHORS   Copeland,N.A., Sercombe,H.E., Ainscough,J.F. and Coverley,D.
  TITLE     Ciz1 cooperates with cyclin-A-CDK2 to activate mammalian DNA
            replication in vitro
  JOURNAL   J Cell Sci 123 (Pt 7), 1108-1115 (2010)
   PUBMED   20215406
REFERENCE   2  (bases 1 to 2627)
  AUTHORS   Ainscough,J.F., Rahman,F.A., Sercombe,H., Sedo,A., Gerlach,B. and
            Coverley,D.
  TITLE     C-terminal domains deliver the DNA replication factor Ciz1 to the
            nuclear matrix
  JOURNAL   J Cell Sci 120 (Pt 1), 115-124 (2007)
   PUBMED   17182902
REFERENCE   3  (bases 1 to 2627)
  AUTHORS   Coverley,D., Marr,J. and Ainscough,J.
  TITLE     Ciz1 promotes mammalian DNA replication
  JOURNAL   J Cell Sci 118 (Pt 1), 101-112 (2005)
   PUBMED   15585571
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000003.1.
            
            On Jan 6, 2022 this sequence version replaced XM_039104760.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360181.575892.1,
                                           SRR26360194.2367077.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-101               JAXUCZ010000003.1  36056417-36056517
            102-252             JAXUCZ010000003.1  36057032-36057182
            253-368             JAXUCZ010000003.1  36057378-36057493
            369-440             JAXUCZ010000003.1  36058905-36058976
            441-670             JAXUCZ010000003.1  36060410-36060639
            671-764             JAXUCZ010000003.1  36063624-36063717
            765-873             JAXUCZ010000003.1  36063834-36063942
            874-1123            JAXUCZ010000003.1  36064487-36064736
            1124-1283           JAXUCZ010000003.1  36064878-36065037
            1284-1405           JAXUCZ010000003.1  36065259-36065380
            1406-1603           JAXUCZ010000003.1  36066266-36066463
            1604-1728           JAXUCZ010000003.1  36067811-36067935
            1729-1816           JAXUCZ010000003.1  36068829-36068916
            1817-1930           JAXUCZ010000003.1  36069335-36069448
            1931-2086           JAXUCZ010000003.1  36069592-36069747
            2087-2156           JAXUCZ010000003.1  36070508-36070577
            2157-2278           JAXUCZ010000003.1  36070698-36070819
            2279-2627           JAXUCZ010000003.1  36071162-36071510
FEATURES             Location/Qualifiers
     source          1..2627
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3p12"
     gene            1..2627
                     /gene="Ciz1"
                     /note="CDKN1A interacting zinc finger protein 1"
                     /db_xref="GeneID:296639"
                     /db_xref="RGD:1305336"
     exon            1..101
                     /gene="Ciz1"
                     /inference="alignment:Splign:2.1.0"
     exon            102..252
                     /gene="Ciz1"
                     /inference="alignment:Splign:2.1.0"
     CDS             107..2494
                     /gene="Ciz1"
                     /note="isoform 1 is encoded by transcript variant 1;
                     cip1-interacting zinc finger protein"
                     /codon_start=1
                     /product="cip1-interacting zinc finger protein isoform 1"
                     /protein_id="NP_001386286.1"
                     /db_xref="GeneID:296639"
                     /db_xref="RGD:1305336"
                     /translation="MFNQQLQQQQQLQQLQQQQLQQQQQQILQLQQLLQQSPPQASLS
                     MPVSRGLPQQSSPQQLLNLQGLNSTSLLNGSMLQRALLLQQLQGLDQFAMPPATYDSA
                     SLTMPTAALGNLRAYNVTAPNLAAPSLTPPQMVTPNLQQFFPQATRQSLLGPPPVGIP
                     INPSQHNHSGRNSQKQPRTPSSTTPNHKDSSSQTVPLDDREDPTEGSEEATELQMDTA
                     EDQDSLVFPDGLASEPQVHEPEPEPFEALEPPAKRLRSSEESTEKGPTGQPQARVQPQ
                     TQMTAPKQTQTPDQLPEPPEALVVPRIQPQVLQIQTLSKLQKQAQTQTSPEHLAPQQN
                     QVQPQVSTQAQPQEQTSEKTQDQPQTWPQGSAPPPEQASVPACATEPQLLSNAAEVGR
                     DPEETLPEPVSAQSSEDRSQEPSAGGLDVGECEKRAGEVLGMWGAGSSLKVTILQSSN
                     SRAFNTTPLTSGPRPGDSASATPALASTPSKQSLQFFCYICKASCSSQQEFQDHMSEA
                     QHQQRLGEMQHSSQTCLLSLLPMPRDILERETEDPPPKRWCNTCQVYYMGDLIQHRRT
                     QEHKVAKQSLRPFCTICNRYFKTPRKFVEHVKSQGHKDKAQELKTLEKETGSPDEDHF
                     ITVDAVGCFESGQEEDEDDDEEEEEEIEAEEEFCKQLQSRETSSEQWKDSETYSPNTA
                     YGVDFLVPVMGYVCRICHKFYDSNSEFRLSHCKSLAHFENLQKYKAKNPSPPTRPVSR
                     KCAINARNALTALFTSSSGSSRQPSPQDTVKIPSKVKPGSPGLPPPLRRSSRLKT"
     exon            253..368
                     /gene="Ciz1"
                     /inference="alignment:Splign:2.1.0"
     exon            369..440
                     /gene="Ciz1"
                     /inference="alignment:Splign:2.1.0"
     exon            441..670
                     /gene="Ciz1"
                     /inference="alignment:Splign:2.1.0"
     exon            671..764
                     /gene="Ciz1"
                     /inference="alignment:Splign:2.1.0"
     exon            765..873
                     /gene="Ciz1"
                     /inference="alignment:Splign:2.1.0"
     exon            874..1123
                     /gene="Ciz1"
                     /inference="alignment:Splign:2.1.0"
     exon            1124..1283
                     /gene="Ciz1"
                     /inference="alignment:Splign:2.1.0"
     exon            1284..1405
                     /gene="Ciz1"
                     /inference="alignment:Splign:2.1.0"
     exon            1406..1603
                     /gene="Ciz1"
                     /inference="alignment:Splign:2.1.0"
     exon            1604..1728
                     /gene="Ciz1"
                     /inference="alignment:Splign:2.1.0"
     exon            1729..1816
                     /gene="Ciz1"
                     /inference="alignment:Splign:2.1.0"
     exon            1817..1930
                     /gene="Ciz1"
                     /inference="alignment:Splign:2.1.0"
     exon            1931..2086
                     /gene="Ciz1"
                     /inference="alignment:Splign:2.1.0"
     exon            2087..2156
                     /gene="Ciz1"
                     /inference="alignment:Splign:2.1.0"
     exon            2157..2278
                     /gene="Ciz1"
                     /inference="alignment:Splign:2.1.0"
     exon            2279..2627
                     /gene="Ciz1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tgtggaggag ggttgggctt cccggggagg atggaccgct gggatagcgg ctacttgcag
       61 agaggttacg ggctttgtgg acaggggagg ccacaggatc accaccatgt ttaaccagca
      121 actccagcag cagcaacagt tgcagcagct ccagcaacag cagctccagc agcagcaaca
      181 gcagatactc cagctccaac agctactgca gcagtcccca ccacaggcct ccttgtccat
      241 gcctgtcagc cggggcctcc cccagcagtc atccccgcaa cagcttctga atctccaggg
      301 cctcaactcg acctccctgc tcaatggctc catgctgcaa agagctttgc tcctacagca
      361 gttgcaagga ctggaccagt ttgcaatgcc accagccacg tatgacagtg ccagcctcac
      421 catgcctacg gcagccttgg gcaacctccg tgcttacaat gtgacagccc caaacctagc
      481 agctcctagc cttacaccac cccagatggt caccccaaat ctgcagcagt tctttcccca
      541 ggctactcga cagtccctgc tggggcctcc tcctgttggg atcccaataa acccttctca
      601 gcataaccac tcagggagga actcccagaa gcagcccaga accccctctt ccaccacccc
      661 caatcacaag gattcttctt ctcagacggt gcctctggac gacagggaag accccacaga
      721 ggggtctgag gaagccacag agctccagat ggacacagct gaagaccaag attcactagt
      781 cttcccagat ggccttgcga gtgagcccca agtgcatgag cctgagcctg agccctttga
      841 ggcgttggaa ccaccagcca agaggttgag gagctcagag gagtccaccg agaaaggccc
      901 tacagggcag ccacaagcaa gggtccagcc tcagacccag atgacagcac caaagcagac
      961 acagacccca gatcagctgc ctgagccacc ggaagccctg gtggtgccgc gaatccagcc
     1021 acaggttctg cagatccaga ctctgtcaaa gctgcagaag caggcacaga cacagacttc
     1081 tccagagcac ttagcgcccc agcagaatca ggtacagcca caggtatcca cccaagcaca
     1141 gccacaggag cagacatcag agaagaccca ggaccagcct cagacctggc cacaggggtc
     1201 ggcaccccca ccagaacaag catcagttcc ggcctgtgcc acggaaccac agctattatc
     1261 taacgctgca gaagttggga gagacccaga ggagaccttg ccagaaccag taagtgccca
     1321 gagcagtgaa gacaggagcc aagagccgtc agctggtggc ctggatgtgg gagaatgtga
     1381 aaagagagca ggagaagtgc tggggatgtg gggggctggg agctccctga aggtcaccat
     1441 cctgcagagt agcaacagcc gggctttcaa caccacaccc ctcacatctg gacctcgccc
     1501 tggggactcc gcctctgcca cccctgccct tgccagcaca ccctccaagc aaagcctcca
     1561 gttcttctgc tacatctgca aggccagctg cagcagccag caggagtttc aggatcacat
     1621 gtcagaggct cagcaccaac agcggcttgg ggaaatgcag cactcgagcc agacctgcct
     1681 gttgtccctg ctgcccatgc ctcgggacat cctggagaga gaaacagaag atcctccacc
     1741 caaacgctgg tgcaacacct gccaggtgta ctacatggga gacctgatcc agcaccgcag
     1801 gacacaggag cacaaggttg ccaagcagtc cctgaggccc ttctgcacca tatgcaaccg
     1861 ttatttcaag acccctcgaa agtttgtgga gcatgtgaag tcccagggac acaaggacaa
     1921 ggcccaggag ctgaagacac ttgaaaaaga gacaggcagc ccagatgagg accacttcat
     1981 caccgtggac gccgttggtt gctttgagag tggtcaagaa gaggacgagg atgatgatga
     2041 agaagaggaa gaagagattg aggcggagga ggaattctgc aagcagctgc agtcaagaga
     2101 aacatcttca gagcaatgga aggactctga gacttacagc cccaacacgg cctatggtgt
     2161 ggacttcctg gtgccagtga tgggctatgt ctgccgaatc tgtcacaagt tctacgacag
     2221 taactcagaa tttcggctct ctcactgcaa gtctctggcc cactttgaga acctgcagaa
     2281 atacaaagcc aagaacccca gccctcctac ccggcctgtg agccgcaagt gtgcgatcaa
     2341 cgcccgcaac gccctgactg cactgttcac ctctagcagt ggtagcagcc gccagcccag
     2401 cccccaggac actgtgaaga tacccagcaa ggtgaagcct ggatcccccg gactccctcc
     2461 tccccttcgg cgctcatcac gcctcaaaac ctgatagagg gagctctggc cactcagcct
     2521 aactagggcc caatctgctg atgctttcta ggtatccgtg tgggaatgtt cacatggttg
     2581 gtgtttttac tcaaaatcca ataaagagtc agaagtttgg ctatgca
//
