LOCUS       NM_001108044            3986 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus CLOCK-interacting pacemaker (Cipc), mRNA.
ACCESSION   NM_001108044 XM_001058624 XM_234430
VERSION     NM_001108044.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3986)
  AUTHORS   Yoshitane,H., Takao,T., Satomi,Y., Du,N.H., Okano,T. and Fukada,Y.
  TITLE     Roles of CLOCK phosphorylation in suppression of E-box-dependent
            transcription
  JOURNAL   Mol Cell Biol 29 (13), 3675-3686 (2009)
   PUBMED   19414601
REFERENCE   2  (bases 1 to 3986)
  AUTHORS   Zhao,W.N., Malinin,N., Yang,F.C., Staknis,D., Gekakis,N., Maier,B.,
            Reischl,S., Kramer,A. and Weitz,C.J.
  TITLE     CIPC is a mammalian circadian clock protein without invertebrate
            homologues
  JOURNAL   Nat Cell Biol 9 (3), 268-275 (2007)
   PUBMED   17310242
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000006.1.
            
            On Apr 30, 2010 this sequence version replaced NM_001108044.1.
            
            Sequence Note: This RefSeq record was created from genomic sequence
            data to make the sequence consistent with the reference genome
            assembly. The genomic coordinates used for the transcript record
            were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360186.398459.1,
                                           SRR26360181.2164652.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-162               JAXUCZ010000006.1  112325980-112326141
            163-350             JAXUCZ010000006.1  112332372-112332559
            351-520             JAXUCZ010000006.1  112339598-112339767
            521-3986            JAXUCZ010000006.1  112341227-112344692
FEATURES             Location/Qualifiers
     source          1..3986
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /map="6q31"
     gene            1..3986
                     /gene="Cipc"
                     /gene_synonym="RGD1309492"
                     /note="CLOCK-interacting pacemaker"
                     /db_xref="GeneID:314330"
                     /db_xref="RGD:1309492"
     exon            1..162
                     /gene="Cipc"
                     /gene_synonym="RGD1309492"
                     /inference="alignment:Splign:2.1.0"
     exon            163..350
                     /gene="Cipc"
                     /gene_synonym="RGD1309492"
                     /inference="alignment:Splign:2.1.0"
     CDS             173..1408
                     /gene="Cipc"
                     /gene_synonym="RGD1309492"
                     /note="CLOCK-interacting protein, circadian"
                     /codon_start=1
                     /product="CLOCK-interacting pacemaker"
                     /protein_id="NP_001101514.2"
                     /db_xref="GeneID:314330"
                     /db_xref="RGD:1309492"
                     /translation="MQRLPVIQLPALLDMERKVPSRESPRRLSAKPGRGTEMKKLARP
                     LGVVAADSDKDSGFSDGSSECLSSAEQMESEDVVSALGWSREDKLRQNARAANHAFPT
                     LSPMVVMKNVLVKQGSSSSQLQSWTVQPSFEVISAQPQLFVLHPPVPSPVSPCHTGEK
                     KSESRNYLPILNSYTKIAPHPGKRGLSSEERGTSGAPKKICVERLGPSLSSSEPAKPG
                     RVLSSPFTPALPSSKLTEDSALQGVPSLGAGGSPQTLQPVSSSHVAKAPSLTFASPAS
                     PVCASDSTLHGLESSSPLSPLSASYSSPLWAAEHLCRSPDIFPEQRQNKHRRFQNTLA
                     VLRKSGLLGITLKAKELIRQNQATQVELDQLKEQTQMFIEATKSRAPQAWAKLQASLT
                     SGSSHSGSDLDTLSDPPDI"
     exon            351..520
                     /gene="Cipc"
                     /gene_synonym="RGD1309492"
                     /inference="alignment:Splign:2.1.0"
     exon            521..3986
                     /gene="Cipc"
                     /gene_synonym="RGD1309492"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cgaaagctgt cgtggaggcg gagggaggag aaatgggcgg gaggccttgg agatagctag
       61 agacccggcg aataccaggt tgtcatggag tcatggggcc catctcgcgc atgcgccagc
      121 taacccgccg ggctggtcat ggagcggcga ccctggccct agagtaatcc atatgcaaag
      181 actacctgtg atccagcttc cagccctctt agacatggag aggaaagtcc catcgagaga
      241 gagccccaga agactctctg ccaagccagg ccgaggcacg gagatgaaaa aactagcccg
      301 accacttggt gtggtggctg ctgactcaga caaggactcc ggcttttcag atgggagctc
      361 agaatgtctg agctctgccg agcagatgga gtcagaggac gtggtgagcg ccctgggctg
      421 gagcagagag gacaagctga ggcagaacgc cagagcggca aaccacgcct tccccacact
      481 gtcccctatg gttgtcatga agaacgtgct ggtcaagcag ggcagcagct catcccagct
      541 ccagtcctgg actgtccagc cctcctttga agtgatctca gcgcagccac agctctttgt
      601 ccttcatcca cctgtgccat ctcctgtcag cccatgccac actggtgaga aaaagtcaga
      661 gtccagaaac tacttgccca ttctaaattc ttataccaaa atagccccgc acccaggcaa
      721 aaggggcctc agctccgaag aaagaggaac aagtggggca ccgaagaaaa tctgcgtgga
      781 gagactgggg ccaagcctgt cttccagtga gccagccaag cctggccgtg tgctatccag
      841 tcctttcact ccagccctac ccagctccaa gctcaccgag gactcggctc tgcaaggagt
      901 gccctccctt ggggctggcg gaagcccaca gactcttcag cctgtgtcca gcagtcatgt
      961 agccaaagcc cccagtctga cctttgcttc gcccgccagt cctgtatgtg catcagacag
     1021 cactctgcat ggcttagaga gcagctcccc tctctcccca ctgtcagcca gttacagttc
     1081 acctctgtgg gctgcggagc acctctgccg cagcccagac atcttccctg agcagaggca
     1141 gaacaagcat aggcgctttc agaataccct agccgtcctc cggaagtctg gtttgctggg
     1201 aatcactctg aaagccaagg agttgattcg tcagaaccaa gcaactcagg tggaactgga
     1261 ccagctgaag gagcaaaccc agatgtttat agaggccacc aagagcaggg ctcctcaggc
     1321 gtgggccaag ttgcaggcgt cactcacatc tgggtccagt cattcaggca gtgacctaga
     1381 cacattgtct gaccccccag acatatagca cagaagcatt tccagttgtt tgagttaact
     1441 cctttgcgtt cacaactaca cttgttttcc acagcctatt taagagcttt tctttctaaa
     1501 gtcacccaca aagccacgtg ccagtccctg gctgctgtct taatctgtgg cccatgcaca
     1561 ggttaagtgt gttaagttcg tgaggacctc cagctggaag tgtctgtgag tccctttccc
     1621 ttagcctgca cgcgcttagc tggtccttgg gacaagggag agacggctgt gtctcttcta
     1681 gctgttactt cccatcctcc tcctcactgt ccaggaccat ggtgcagtga catggatgag
     1741 tgcacacagt gacacttgtc caacagccaa ggagtaggtg acctaaggat cccttcactg
     1801 tcctccttca agtatgttag tcatggagaa aaagaagagg atgtgttttc attttaccag
     1861 gtgtggtctg ttgagtgaaa cctagaatgc tttgggccag gtgcctgggg gcaagcattt
     1921 accacatgag gctttgttcc ttacacttga aaggtaaggg agaaagggca aagccatctg
     1981 actcacaccg atcacacact gatctcactt ataccagtag gcaaatactt cagattttta
     2041 aaatatagaa tggatttaat actgtctgga attgtatttg atgaattgct tttttgattt
     2101 aagggtcaaa gaaggcagca ttttggtcac tagctggaag gttttagtaa tttatgctgg
     2161 aaatagcaca acccatcaga ggcttgagat gggcctgtag gatggctccg tgagtaaagg
     2221 tgcttactgc caatgacctg agtctgaccc ctgaacccca tgatagaccg agggaaccta
     2281 ctactgtaca tgcacataca ccatgataaa tggatataaa attaaaaata gaagtcaacg
     2341 tcaaaacaag gtaaaacaat cacaagcttg agatggcttc agtgggtcct cggggtctag
     2401 tgtaagtcca ccctcagctg tctcttgtct gtacctcacc cagctgtgtc tgagggaaaa
     2461 atgatcatgc ttataaattt aagttaagta aaccccaggc cacagcaacc agaaaacatc
     2521 cattttcaca tctgggttct cactcatgcc ctgtcatgat ggggacactg tggaacagtc
     2581 ttgcaccttt gtttgatgtg ggcagcaggg ctgaagtgtg atgtccctct ctgaggctgg
     2641 tcttagggtg gagagcttaa ggagatccca ttgtcttcag cttccctgtg tctaagtggt
     2701 aaagatccca aggcttgtat cctgcctgtt aaaattttca tcctcctgga aatctttgtt
     2761 ctttacaaat taacttgggt tttatgacca gcctcatctt tttctgcaga gagtgtgctc
     2821 ttggggcttt actaggtcca gttaaggttc acatttatta catagctggt tgtaattcta
     2881 acatagttta aaaagtataa gactcaggtt ggctccactg tgctcataaa gatatatgat
     2941 ttagatgcga ctggtttaaa aatgatcaac ttggtaaaat ctctgttctt tggtcaacat
     3001 agaattatta cttgctgttt gctttctgaa agtttctaaa atcagagtca gtgtttctgg
     3061 gtaggctcga ctccttccct tgattccgtg gtattgtgtt ctgcactcca ctgggaagca
     3121 tccttcctgg cagaatgttt ggcaggaagg ctgcagagac aggagcattc agagcagcct
     3181 gcaccagctg tgccttactg tgtgtcagaa ggctgggagc acttgctggg agccaagtat
     3241 actactgcac tggaaaagcc ctctgtggtg ctgtaagtca tgggactctc ttcccacatt
     3301 cgggtttcat ttcctgtcct gtccccataa gagatgatga gagccaccgt ggatcctcac
     3361 tgctgagtgg tgggagggtt ggccccgtca ctgctcctct gtgatcctag aggcacagct
     3421 gcacatctct aggctgctag catagtgctc tgttcctgga gcagctggaa gcagacagac
     3481 tccagtagag aatcctttga ggcccgagag cagaccagca cttagagaaa gtctggagtg
     3541 gaccagaaga atcttcattg gttgcccaag gctgtgagta gcaatggcct tagtgcatgc
     3601 tatgagctct tctgaagcat tatgtagggc cgttgttttc tcaaggtgag gagtcaattt
     3661 taactcagac cagcccacag gagaaccctt gtcagttgta ttggcaatat cggacacagt
     3721 tagaaaggtt cccgactgaa attggttata gaatgcactg tcatttgtaa tgtactacac
     3781 tgtttttatt gattatggta ctgtctgacc tatcttttct ggtatgactc cttcagcaga
     3841 cacattgctt ctgcccatat actgaagcga ctccttaggg tagagactac caaatgtgag
     3901 ttcttctaag aaagtgtgaa gtcatgtaga aattgactgt gaaatgtcaa aaaaaaaaaa
     3961 aataaaagtc atgtacttga aagcta
//
