LOCUS       XM_039111006            2533 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus ciliary microtubule inner protein 2B
            (Cimip2b), transcript variant X2, mRNA.
ACCESSION   XM_039111006
VERSION     XM_039111006.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039111006.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2533
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2533
                     /gene="Cimip2b"
                     /note="ciliary microtubule inner protein 2B; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 Protein, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 29 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:100365928"
                     /db_xref="RGD:2318060"
     CDS             1314..2495
                     /gene="Cimip2b"
                     /codon_start=1
                     /product="protein FAM166B isoform X2"
                     /protein_id="XP_038966934.1"
                     /db_xref="GeneID:100365928"
                     /db_xref="RGD:2318060"
                     /translation="MAWQASSPASHLEASQDEGSYSPQPLPCSMCQHGTGPRETKKLL
                     SVLVCWLGPSNPHPLPRPLPPAPYPWTRYTGPRVPPGREIERTASVPMAMVNTFIPGL
                     SPQNPHYIPGYTGHCPLLRFSVGQTYGQVTGQLLRGPPGLAWPPAHRTLLPPIRSPRS
                     PVISRRRPPPRRGHERLSSSVVPGYTGFIPQARFIFAKNCNQVWAEAMSDFTQRRGAQ
                     ESPELQEAKGEEEVERDQGPEAEEPQLKHELAQVRWGRAGGAGLGARCLRGARILFFL
                     SLTSHQTSPYSMDDTDPQKFFMSASLCSPTRRCRNLDRCAPGAGCRRTPNLFPHSLGP
                     TFRIWVFYLTMEVTCQGISSSLVVHLGILPMMPWASASLRNSSWPKYLDSKFSLLILT
                     H"
ORIGIN      
        1 caacatggag tgaggttaaa agtctgagcc aactgtgtgc tttaagacat ggttgggcta
       61 tgttaggcca ggcaggtaat cctcctgcct cacctcccaa gtgctagcgt tagaggagtg
      121 tgctgcctcg tttagctttg agcctgttta gcttttgaag tctttaagga atgacactta
      181 ggctctaagt gaaagaaagt gaccttaaca ataatggaat agaaaagcgg gtcaattcag
      241 ctgctcagtc actctcagag gcgatgtcct gggtaagcat tctcaagggt tcaagatgtc
      301 tgctcaagcg ttccaccatc acctcaagga ccatctagag gcagaaaaca acctcatctc
      361 ctcttgtgtc tctcctgagg attgaaggct atcccccagg tccggctacg gcatatttcc
      421 tccatcttat ccagagggtt agtagcccag gctaacaatc tagagagttt taaaatgcag
      481 agttggcttg tctgctggtt tcagtccttt atccttacac gactctcctt ccctgaactc
      541 tctgagtggg ggcctcctct ctccctccca cggcgttacc actcaccagc attctgtgtc
      601 agaaggcgag gcgtcctcct gaggccttag tagctgctcc tttcacttag ctcagcgagg
      661 ctgctgaccc tcagagcctt agtaagctca ggcattttaa ccctcacact ggagatcgga
      721 gaagttgggg gcagaggaag ttaaggtatc tactccaaga ggttgaggcc ctcagacaga
      781 agccaaggcc tgctgggcct tacgccccag ttcttgcccc cgctccacat tcttctgagt
      841 tcatatctct gtgtcctggg tatatacttg ggtggtagag gacttgctga gcatgtggca
      901 ggtctgtgtt tccagctctg gcatacaggt atagattaat ttgggcttca gagcaggtgg
      961 taaacaatac catctgcagt tgcacatgag gacagcggct cagttttacc cagaggctca
     1021 tggaccttct gcatggtgca tcctgccatc ctcagggtgc tgagccgagc agggcatatc
     1081 aatgagtgga tggagtatag cagccatcca gtaaataacc cctgtattaa ttccaattac
     1141 cttactgacc atgcctacag tctctaggct tgccccgtcc ccaccccatt atctctctct
     1201 ggatgactca aactcttctt gaagcctctt tctacaagcc tcaccgggta ccacaacccc
     1261 ctctcttcag ccaggaaggg cctaaagtag ggaatctttt gagatagagc caaatggcct
     1321 ggcaggcctc atcccccgcc tcccacctag aggcttcgca ggatgaaggc agctattccc
     1381 ctcagcccct gccctgctcc atgtgccagc atggcactgg ccccagggag accaagaagc
     1441 tgctctccgt cctggtctgc tggcttggcc ctagcaatcc ccaccctctg ccccgccccc
     1501 ttcctccggc cccatacccc tggacacggt acacagggcc cagagtccct cctggaaggg
     1561 aaatagaaag aactgcttcg gttcccatgg ctatggtcaa cactttcatc ccagggctca
     1621 gccctcagaa tccgcactat attccggggt acaccggaca ctgcccactg cttcggttca
     1681 gcgtgggcca gacctatggg caggtgactg gtcagctact ccgaggccct cctggtctag
     1741 cctggcctcc tgctcaccga acacttctgc ctcccatccg gtctccaaga tctcctgtga
     1801 tctccaggag gaggccgcct cccaggcgtg ggcacgaaag gctcagctcc agcgtagtcc
     1861 ctgggtatac aggctttata ccacaggcac ggttcatttt tgccaagaat tgcaaccagg
     1921 tttgggctga agctatgagt gattttacac aaaggcgcgg ggcacaggag agtcctgaac
     1981 tccaggaggc caagggagag gaggaggtgg agagggacca agggccggag gcagaggagc
     2041 cacagctgaa gcacgagttg gcacaggtga gatggggcag ggctggtggg gcagggctgg
     2101 gtgcccgctg tctccgggga gcccgaattt tgttttttct ttcattaact tctcaccaga
     2161 cctcccccta ctccatggat gatacagacc cccagaagtt cttcatgtca gcttccctgt
     2221 gctcaccaac caggcgctgc aggaatttgg acagatgtgc tccgggggca gggtgcagaa
     2281 ggaccccaaa cctctttccc cactccctag gcccaacttt cagaatctgg gtcttctacc
     2341 tcactatgga ggttacgtgc cagggtataa gttccagttt ggtggtacat ttgggcatct
     2401 tacccatgat gccctgggcc tcagcatcac tcagaaacag ctcctggcct aagtacctgg
     2461 attccaaatt ctctcttctc atcctaactc actgatcctt ttggaaggaa gggaggtggg
     2521 tgggggaggg gca
//
