LOCUS       XM_003749376             913 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus ciliary microtubule associated protein
            3 (Cimap3), transcript variant X1, mRNA.
ACCESSION   XM_003749376
VERSION     XM_003749376.5
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_003749376.6.
            
            On Jan 21, 2021 this sequence version replaced XM_003749376.4.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..913
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..913
                     /gene="Cimap3"
                     /note="ciliary microtubule associated protein 3; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 3 ESTs, 2 Proteins, and 97% coverage of the annotated
                     genomic feature by RNAseq alignments, including 3 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:691223"
                     /db_xref="RGD:1586282"
     CDS             1..735
                     /gene="Cimap3"
                     /codon_start=1
                     /product="protein pitchfork isoform X1"
                     /protein_id="XP_003749424.1"
                     /db_xref="GeneID:691223"
                     /db_xref="RGD:1586282"
                     /translation="MHTENEEELGPPESIHAMQLLFKTLEASETPQIEQPDKTKENES
                     LRRNEHHALWDITHGKVNKYSFGTRQARKLFPHYHPPTWLGNTYLPLRGLPHTGPGCY
                     AATDWNGLAYNLSKVPTSTKGYAIGARTSVRFKPINKDVTPYPGMYQKVDISSEKHKK
                     CFAPFNILMPRFKSDVKGDSYPGPGTYNPKNNSVPKVSWPMKFGSPDWSQVPCLEKRT
                     LKAELSTDKDFRKHRNRVAYFSLYYK"
ORIGIN      
        1 atgcacacag aaaatgagga ggaactcggg cctcctgaaa gtatccatgc aatgcagtta
       61 ctattcaaaa ctcttgaggc atctgaaacg cctcagatag aacaacctga caagaccaaa
      121 gagaatgaat ccctacgacg aaatgaacat catgccctat gggacatcac tcatgggaag
      181 gtgaataaat actcctttgg aacacgtcaa gcgaggaaac tctttcctca ctaccatccc
      241 ccaacctggc tggggaacac ttatctccct cttaggggac tgccccacac aggccctggg
      301 tgttatgcag caacagattg gaatggttta gcatataacc tatcaaaagt cccaaccagt
      361 acaaaaggct atgctattgg agccaggaca tctgtgaggt ttaagccaat caacaaggat
      421 gtgacaccat acccgggaat gtatcagaaa gttgatattt caagtgaaaa acacaaaaaa
      481 tgctttgctc cttttaacat cttgatgcct cgatttaaga gcgatgtaaa gggcgattct
      541 taccctggcc ctgggacata caatcctaag aacaattcag tcccaaaagt tagttggcca
      601 atgaaatttg gatctccaga ctggtctcag gtcccatgtc tagagaaaag gactctgaaa
      661 gctgagctgt ccacagacaa ggactttaga aagcatcgga accgtgtggc ctactttagc
      721 ctgtattaca aatgagaagt aggcactgtc ttcatgtgtt cttgaccaca gagtctccag
      781 aattgaggac atagctgctc ttgtatttct gtgttcctgg gccctcttgt ctgcctattt
      841 ggtgtccagg aagggacaag ggtctcatag tcacgtcgcc ctccaaataa ataaaggctg
      901 gtccagaatg ttt
//
