LOCUS       NM_001109262            1968 bp    mRNA    linear   ROD 09-FEB-2025
DEFINITION  Rattus norvegicus ciliary microtubule associated protein 2
            (Cimap2), mRNA.
ACCESSION   NM_001109262 XM_001065325 XM_575877
VERSION     NM_001109262.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1968)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
REFERENCE   2  (bases 1 to 1968)
  AUTHORS   Bonaldo,M.F., Lennon,G. and Soares,M.B.
  TITLE     Normalization and subtraction: two approaches to facilitate gene
            discovery
  JOURNAL   Genome Res 6 (9), 791-806 (1996)
   PUBMED   8889548
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BC160900.1, CN542282.1 and BQ209190.1.
            
            On Jun 19, 2009 this sequence version replaced NM_001109262.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC160900.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1472              BC160900.1         1-1472
            1473-1946           CN542282.1         18-491              c
            1947-1968           BQ209190.1         1-22                c
FEATURES             Location/Qualifiers
     source          1..1968
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="Sprague-Dawley"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q34"
     gene            1..1968
                     /gene="Cimap2"
                     /gene_synonym="Lexm; RGD1559493"
                     /note="ciliary microtubule associated protein 2"
                     /db_xref="GeneID:500516"
                     /db_xref="RGD:1559493"
     exon            1..100
                     /gene="Cimap2"
                     /gene_synonym="Lexm; RGD1559493"
                     /inference="alignment:Splign:2.1.0"
     CDS             45..1253
                     /gene="Cimap2"
                     /gene_synonym="Lexm; RGD1559493"
                     /note="uncharacterized protein C1orf177 homolog;
                     lymphocyte expansion molecule"
                     /codon_start=1
                     /product="ciliary microtubule-associated protein 2"
                     /protein_id="NP_001102732.1"
                     /db_xref="GeneID:500516"
                     /db_xref="RGD:1559493"
                     /translation="MSTIRKWFKGAPFGVQSHRFDVSAVHPNQKKFSTFTEAPYSRHH
                     SVELSHIGPGTYNSKETCFSKKFLEQKLGAGWARAQEASRLTQLPHFHFQAIKKEREQ
                     QANKRGPGSYNIKDFLTELQKKPQSKRGLLSSGETRFRGLIGNYYPGPGNYGEKGNPY
                     TQLEKNSWNRSHSDGLMCRLSSKPPPLSHQGSGLGPGTYTIKSDIETFVEKSTGTRGP
                     YDIFSGERSSPVPYGHYSVQKKKPRELTSFKSFVDELNAPHKKKQGGFSKYPRDPKHP
                     TERIYWTTLSQCPKDVNVAGPGSWLPHETEQKHVNRPPFLLASKRSGLKACQMLLGTW
                     NPVGVGRYLNTTLMEKIDRRQRYRSLFMSEPKRYLHDLNRDKLLQERITPFTKGKCRP
                     TVDYNSDPTP"
     exon            101..188
                     /gene="Cimap2"
                     /gene_synonym="Lexm; RGD1559493"
                     /inference="alignment:Splign:2.1.0"
     exon            189..353
                     /gene="Cimap2"
                     /gene_synonym="Lexm; RGD1559493"
                     /inference="alignment:Splign:2.1.0"
     exon            354..476
                     /gene="Cimap2"
                     /gene_synonym="Lexm; RGD1559493"
                     /inference="alignment:Splign:2.1.0"
     exon            477..614
                     /gene="Cimap2"
                     /gene_synonym="Lexm; RGD1559493"
                     /inference="alignment:Splign:2.1.0"
     exon            615..758
                     /gene="Cimap2"
                     /gene_synonym="Lexm; RGD1559493"
                     /inference="alignment:Splign:2.1.0"
     exon            759..920
                     /gene="Cimap2"
                     /gene_synonym="Lexm; RGD1559493"
                     /inference="alignment:Splign:2.1.0"
     exon            921..1046
                     /gene="Cimap2"
                     /gene_synonym="Lexm; RGD1559493"
                     /inference="alignment:Splign:2.1.0"
     exon            1047..1180
                     /gene="Cimap2"
                     /gene_synonym="Lexm; RGD1559493"
                     /inference="alignment:Splign:2.1.0"
     exon            1181..1950
                     /gene="Cimap2"
                     /gene_synonym="Lexm; RGD1559493"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggctcagtga gacctcgcac ccacggcgcc ccctgcacaa cagaatgtct accatccgca
       61 agtggttcaa aggggcgccc tttggggtgc agagccacag gtttgatgtc tctgctgtcc
      121 atcccaacca gaagaaattc agcaccttca ctgaggcccc atactccagg catcattccg
      181 tggaactgtc ccacatagga cctggaacct ataactcgaa ggagacctgc ttcagcaaga
      241 agttcctgga acagaagttg ggcgcaggat gggcccgggc ccaagaagcc agccggctga
      301 cccaacttcc ccacttccat ttccaggcca tcaagaagga aagagagcag caggcgaaca
      361 aacgggggcc tggctcctac aacatcaaag acttcttgac tgagctgcag aagaaaccac
      421 agagcaaacg gggtctgctc agctctgggg agactcgctt ccgaggactc atcgggaatt
      481 attatcccgg ccctggaaat tatggggaga aggggaaccc ctacacacag ctggagaaga
      541 attcctggaa ccgctcacac tccgacggcc ttatgtgtag attgtccagc aagccaccac
      601 ccttgtctca tcagggcagt ggcctgggac ctggaaccta taccatcaaa agcgatattg
      661 agacctttgt ggaaaagtcc accggtactc gtggccccta cgacattttc tctggcgaga
      721 ggagcagtcc tgtgccctat gggcattatt cagttcagaa aaagaagccc agggaattga
      781 cgagtttcaa gagctttgtg gatgaactga acgcaccaca caagaagaaa caagggggtt
      841 tctcaaaata tccccgggat ccgaaacacc ctacagagag aatttactgg acaaccctta
      901 gtcagtgccc caaagatgtg aatgtagctg gccctggttc ttggcttcct catgagacag
      961 aacagaaaca tgtcaaccgg ccaccgttcc tcctggcctc caagcggtca ggcctaaagg
     1021 cctgccagat gcttttggga acctggaacc cagtcggggt aggccgctat ctcaacacca
     1081 cactgatgga gaaaatagac cggaggcaga gataccgctc tctgttcatg agtgaaccca
     1141 agcgctacct gcacgaccta aaccgagaca aactcctgca ggaacggatt acacctttta
     1201 cgaagggcaa gtgccgtcca actgtggact acaattcaga tccgactcct taaagccaca
     1261 cggaaagaac atccagagag cccaaggccg gaagagagac cttgggatgg caggatggga
     1321 aggggagcag gggtcttgga gaatgcctgg gagagaggag aaggcgggag ggagggtcat
     1381 ctttgctgta gccctatggt caaaagtcac agtgtctgat gggacagcag gggggccagg
     1441 tatcttttgt tacaagagat ccattgttct aagcattcta gtcagctggt gatgtgaatc
     1501 tgggagccag acagcagatg gatggaagag gggagcatgg gtgactcccc gcaacccaga
     1561 gcgtgggtac ctaactcatt attgtcccag aatgaggctg ggagagagca tttgttatgc
     1621 agcagtttgg gcctcctagg aaaaccccat ctccacacta ggatgcttct ggaagctcaa
     1681 caaagtctcg tgttgagagg agactgctga cttccagtgt ccagcagttg aaacagcctc
     1741 tgcaccctac tttagcactg tgggccgacc agcgtagtca gaggtgggtc tgtgggggtg
     1801 agtgacaaca tcctgtgaca ttcccctcac ggtttacatc gatgacagtt gagtgtggtg
     1861 gcaggagcca gctgtcccca gagaagagga tgcagagacc cgacagactc agccacagaa
     1921 cttacataat aaaacaattt cagacacgtt aaaaaaaaaa aaaaaaaa
//
