LOCUS       NM_001414978             900 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus ciliary microtubule associated protein 1B
            (Cimap1b), transcript variant 1, mRNA.
ACCESSION   NM_001414978 XM_006242238
VERSION     NM_001414978.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 900)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000007.1.
            
            On Dec 16, 2022 this sequence version replaced XM_006242238.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR22582416.147440.1,
                                           SRR26360172.1949534.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760389 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-45                JAXUCZ010000007.1  122326877-122326921 c
            46-187              JAXUCZ010000007.1  122326377-122326518 c
            188-391             JAXUCZ010000007.1  122325954-122326157 c
            392-496             JAXUCZ010000007.1  122324733-122324837 c
            497-618             JAXUCZ010000007.1  122324497-122324618 c
            619-756             JAXUCZ010000007.1  122324146-122324283 c
            757-900             JAXUCZ010000007.1  122323860-122324003 c
FEATURES             Location/Qualifiers
     source          1..900
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q34"
     gene            1..900
                     /gene="Cimap1b"
                     /gene_synonym="Odf3b; RGD1564322"
                     /note="ciliary microtubule associated protein 1B"
                     /db_xref="GeneID:500917"
                     /db_xref="RGD:1564322"
     exon            1..45
                     /gene="Cimap1b"
                     /gene_synonym="Odf3b; RGD1564322"
                     /inference="alignment:Splign:2.1.0"
     exon            46..187
                     /gene="Cimap1b"
                     /gene_synonym="Odf3b; RGD1564322"
                     /inference="alignment:Splign:2.1.0"
     CDS             79..843
                     /gene="Cimap1b"
                     /gene_synonym="Odf3b; RGD1564322"
                     /note="isoform 1 is encoded by transcript variant 1; outer
                     dense fiber protein 3B; outer dense fiber of sperm tails
                     3B"
                     /codon_start=1
                     /product="ciliary microtubule associated protein 1B
                     isoform 1"
                     /protein_id="NP_001401907.1"
                     /db_xref="GeneID:500917"
                     /db_xref="RGD:1564322"
                     /translation="MGSEVWVGTWRPHRPRVPIAALYRGPGPKYKLPPNTGYKLHDPS
                     RPRAPAFSFGSRLPLRHATCGPGPSYLVPAGMTARGSVVSPAFSIYGRLSHITPVLTP
                     GPGRYFPERAGNVTYPSAPRHTIASRNWGIVSKQQTPGPGSYTVPSLLGSRVIGKVSA
                     PTYSIYGRSAVGSCFEDLSKTPGPCAYHVVNPGIYKTRAPQFTMLGRTLPPKSPKDPG
                     PASYAVDKHRKPPPGWTFGIRHSDYLAPMIRYHVDD"
     exon            188..391
                     /gene="Cimap1b"
                     /gene_synonym="Odf3b; RGD1564322"
                     /inference="alignment:Splign:2.1.0"
     exon            392..496
                     /gene="Cimap1b"
                     /gene_synonym="Odf3b; RGD1564322"
                     /inference="alignment:Splign:2.1.0"
     exon            497..618
                     /gene="Cimap1b"
                     /gene_synonym="Odf3b; RGD1564322"
                     /inference="alignment:Splign:2.1.0"
     exon            619..756
                     /gene="Cimap1b"
                     /gene_synonym="Odf3b; RGD1564322"
                     /inference="alignment:Splign:2.1.0"
     exon            757..900
                     /gene="Cimap1b"
                     /gene_synonym="Odf3b; RGD1564322"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aagctcccca gctttgcttc cccaagaggg taaccaccac agcaggtgct gccagccata
       61 agcgccccca cctgcgctat gggctcagaa gtctgggtcg gcacttggcg gccacatcgg
      121 ccccgcgtcc ccatcgcggc gctctaccga ggcccggggc caaaatacaa gctgccacca
      181 aacaccggtt acaaactgca cgacccatct cggccgcgag cccccgcctt ctccttcggc
      241 tcgcgtctac ccttgcggca tgcaacctgc ggaccgggac cgagttacct ggtgcctgcc
      301 ggcatgactg cgcgcggcag cgttgtctcc ccggccttct ccatctatgg tcgcctaagc
      361 cacataacgc ctgtcctcac tccgggaccg ggcaggtact tcccagaacg cgcgggaaat
      421 gtgacgtatc ccagcgcccc tcggcatacc atcgcttccc gaaactgggg catcgtctca
      481 aagcaacaaa ccccaggccc tgggtcctat accgtgcctt cgctcttggg ctcacgtgtc
      541 ataggcaaag tctcagctcc aacttactcc atctacggcc gcagcgctgt gggcagctgc
      601 ttcgaggacc tcagcaagac cccaggccct tgtgcctacc acgttgtgaa cccagggatc
      661 tacaagactc gagccccgca gttcacgatg ctggggcgga ctttgccacc aaagagcccc
      721 aaagatccag gacccgcatc ctacgccgtg gacaagcacc ggaagcctcc tcctggctgg
      781 accttcggga tcaggcattc agactacctg gcccccatga tacggtacca cgtggacgac
      841 tgacgccagc aagcacgcat gcacgggccc tcggttgttt atttaaagct ttcaaagtca
//
