LOCUS       XM_039096669            1208 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus cell death-inducing DFFA-like effector
            a (Cidea), transcript variant X1, mRNA.
ACCESSION   XM_039096669
VERSION     XM_039096669.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051353.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039096669.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1208
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="18"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1208
                     /gene="Cidea"
                     /note="cell death-inducing DFFA-like effector a; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 14 ESTs, 6 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     3 samples with support for all annotated introns"
                     /db_xref="GeneID:291541"
                     /db_xref="RGD:1305106"
     CDS             170..946
                     /gene="Cidea"
                     /codon_start=1
                     /product="lipid transferase CIDEA isoform X1"
                     /protein_id="XP_038952597.1"
                     /db_xref="GeneID:291541"
                     /db_xref="RGD:1305106"
                     /translation="MGSTPARFKKESEWRPFCKNVVFSSCSSSSEFISASLVTLERQQ
                     VCYKQISRPSFWPLTFMGLQTKKVLLTPLIHPARPFRVSNHDRSSRRGVMASSLRELI
                     SKTLDVLVITTGLVTLVLEEDGTVVDTEEFFQTLRDNTHFMILEKGQKWTPGNKYVCT
                     QTKKSGIARVTFDLYRLNPKDFLGCLNVKATMYEMYSVSYDIRCTSFKALLRSLLRFA
                     SYAAQVTGQFLVYAGAYVLRALGDTEEQPSPKASAKGWFM"
ORIGIN      
        1 gaatctatgg cgattgccat ggcaacagag gcctgagtcc tttctagtcg cctaggggtg
       61 acatcactgt catcgctgga ttcagaggtg acctacgact ttaaagccgg ttcctgactg
      121 taaaaccagt tcccgatgcc aggagcgagt gcttaacaag tctgatacca tgggctccac
      181 tccagcacgg ttcaaaaaag aatcagaatg gcgtcccttt tgtaagaatg tggttttcag
      241 cagctgctct tccagctcag aatttatctc ggcttcactg gtgaccttag aaagacaaca
      301 agtttgctac aaacaaattt caagacctag tttctggccc ctgacattca tggggttgca
      361 gacgaaaaag gtcctgctta cccccctcat acaccctgct cgtcctttcc gggtttcaaa
      421 ccatgaccga agcagccggc gtggggtgat ggccagcagc ctgcgggaac ttatcagcaa
      481 gactctggat gtcttggtca tcacaactgg cctggtcacg ctggtgctgg aggaggatgg
      541 taccgtggtg gacacagagg agttctttca gaccctaaga gacaacacac acttcatgat
      601 cttggaaaag ggacagaaat ggacaccggg caataagtat gtctgcacac aaacaaagaa
      661 gtcaggaata gccagagtca ccttcgacct atacaggctg aatcccaagg acttcctcgg
      721 ctgtctcaat gtcaaagcca ccatgtatga gatgtactca gtgtcgtatg atatccgctg
      781 cacaagcttc aaggccttgt taaggagtct gctgcggttc gcatcctatg ctgcccaggt
      841 gaccggacag ttcctggttt atgcgggcgc ttatgtgctc cgagcactgg gtgacacaga
      901 agagcagcca tcccccaagg ctagcgccaa aggctggttc atgtaatcag atcacagata
      961 cagaggtcca gggacccagc tttcacgcaa attctctacc atctgttaca ggctgtggga
     1021 tgtcagagga aggaacgggg tttggtggtg gtacccaggg caggaccgag cagcaggatt
     1081 cccgcaagag aaaggaggca gatgggcctt tcaagagctt taggaagcga ctaacagcag
     1141 agtgtctggg aacatacgaa tcagtctctt gcatattgta ataaaccaaa cacaagactc
     1201 gccattaa
//
