LOCUS       NM_001134593            1418 bp    mRNA    linear   ROD 23-MAR-2023
DEFINITION  Rattus norvegicus circadian associated repressor of transcription
            (Ciart), mRNA.
ACCESSION   NM_001134593 XM_574994 XR_007901
VERSION     NM_001134593.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1418)
  AUTHORS   Goriki A, Hatanaka F, Myung J, Kim JK, Yoritaka T, Tanoue S, Abe T,
            Kiyonari H, Fujimoto K, Kato Y, Todo T, Matsubara A, Forger D and
            Takumi T.
  TITLE     A novel protein, CHRONO, functions as a core component of the
            mammalian circadian clock
  JOURNAL   PLoS Biol 12 (4), e1001839 (2014)
   PUBMED   24736997
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1418)
  AUTHORS   Annayev Y, Adar S, Chiou YY, Lieb JD, Sancar A and Ye R.
  TITLE     Gene model 129 (Gm129) encodes a novel transcriptional repressor
            that modulates circadian gene expression
  JOURNAL   J Biol Chem 289 (8), 5013-5024 (2014)
   PUBMED   24385426
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH474015.2.
            
            On or before Sep 4, 2008 this sequence version replaced
            XR_007901.1, XM_574994.2.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMEA5760389
                              [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1418
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q34"
     gene            1..1418
                     /gene="Ciart"
                     /gene_synonym="RGD1566380"
                     /note="circadian associated repressor of transcription"
                     /db_xref="GeneID:365871"
                     /db_xref="RGD:1566380"
     exon            1..96
                     /gene="Ciart"
                     /gene_synonym="RGD1566380"
                     /inference="alignment:Splign:2.1.0"
     exon            97..495
                     /gene="Ciart"
                     /gene_synonym="RGD1566380"
                     /inference="alignment:Splign:2.1.0"
     CDS             151..1239
                     /gene="Ciart"
                     /gene_synonym="RGD1566380"
                     /note="hypothetical gene supported by NM_017187"
                     /codon_start=1
                     /product="circadian-associated transcriptional repressor"
                     /protein_id="NP_001128065.1"
                     /db_xref="GeneID:365871"
                     /db_xref="RGD:1566380"
                     /translation="MDSPSSVSSYSSSSLSPSFSTSPVNSDFSFPSDNEREGMRTREL
                     RPDTVGQRGGSRPSPGPIRCRHRPRVSSNQHTASHLEQQGSEVKRSRDGELETSLNTQ
                     GCTTEGDLLFAQKCKELQGFIRPLTDLLNGLKMGRFDRGLSSFQQSVAMDRIQRIVGV
                     LQKPHMGERYLGTLLQVEGMLKTWFPHIAAQKSSLGGSRHQISKHFPSHHSDSGASSP
                     APLIGKMGQTQLGHLVLKPKQPWHLTGWPAMNLTWIHDTPICNPPLGSQGSTSGHSPN
                     GTGASIGVILVLQKGGQPFTHSAPGTPIPPTTLSPVLPGDLRKLSGEEPRCHSLPVTL
                     PSDWRCILCPPVLPTADREVTTGHQSHR"
     exon            496..571
                     /gene="Ciart"
                     /gene_synonym="RGD1566380"
                     /inference="alignment:Splign:2.1.0"
     exon            572..650
                     /gene="Ciart"
                     /gene_synonym="RGD1566380"
                     /inference="alignment:Splign:2.1.0"
     exon            651..762
                     /gene="Ciart"
                     /gene_synonym="RGD1566380"
                     /inference="alignment:Splign:2.1.0"
     exon            763..1418
                     /gene="Ciart"
                     /gene_synonym="RGD1566380"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gggcgggacc cacagagtga ggcggaggtg ggtcggctag acccgcacag acggtgaagg
       61 agctggatac cgacaggact gagctgacag acccaggttc tgatctttgg tactacggga
      121 gctgctcttc agccccctgc tcctggacct atggattctc catctagcgt ttcttcttat
      181 tcctcctcct ctctctcccc gtcattttcc acgtcccctg tgaacagtga ctttagcttc
      241 ccatctgata atgagaggga gggcatgcgc acccgtgagc tcaggccaga cactgtgggg
      301 cagagaggag gttccaggcc cagtccaggc cccatccgct gccgacaccg acccagggtt
      361 tctagtaacc aacatacagc atctcacctg gaacagcaag gatctgaagt caaaagatca
      421 agagacggtg aattggagac aagtctaaac acccagggat gtactacaga gggagacctg
      481 ctctttgctc aaaagtgtaa agaactccaa gggttcatac ggcccctcac agacctactg
      541 aacggattaa aaatgggtcg ctttgacaga ggattaagta gcttccaaca gagcgtggcc
      601 atggaccgga tccagcgtat agtgggtgtt ttacagaagc ctcatatggg agagcgttat
      661 ctaggaaccc tgctgcaggt ggaaggcatg ctaaagactt ggtttcctca tatagctgcc
      721 cagaaatcat ccttaggagg aagcaggcat cagataagca agcacttccc tagccaccac
      781 agtgattcag gtgcttcttc tcctgcgcct ctcataggga agatgggcca gacacagctg
      841 ggacatttag ttttgaaacc aaagcagcct tggcatctca caggatggcc ggctatgaac
      901 ctcacctgga tccatgacac tccaatttgt aaccctcccc tcggttccca aggctccacc
      961 tctggccaca gccccaacgg cactggagcc agcattggcg tcatccttgt cctccagaaa
     1021 ggaggacagc ccttcaccca ttctgccccg ggcactccaa tcccaccaac tacactgtct
     1081 cctgtcctcc ctggtgatct gaggaaactg tcgggagagg agcctcgctg ccacagtttg
     1141 ccagtaacgc tgccatcaga ctggaggtgc atcctttgtc cccctgtcct acctaccgca
     1201 gatcgagagg tgactacagg acaccagagc cacagatgat gaaccatcct ccagttgctc
     1261 agaccctcag ccctaaccca ggctctgcaa cttcccctgg atcccaacct gtataaatat
     1321 gtttgtataa atatgtttgt gtgtattttt ttttttttta cttttaatgt atttgcggtg
     1381 aggaaaaata aatcctttct gattaaagac actttttt
//
