LOCUS       XM_225912               6788 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus chondroitin sulfate synthase 3
            (Chsy3), mRNA.
ACCESSION   XM_225912
VERSION     XM_225912.9
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051353.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_225912.10.
            
            On Jan 21, 2021 this sequence version replaced XM_225912.8.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6788
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="18"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6788
                     /gene="Chsy3"
                     /note="chondroitin sulfate synthase 3; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 11 ESTs, 6 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     59 samples with support for all annotated introns"
                     /db_xref="GeneID:291577"
                     /db_xref="RGD:1560819"
     CDS             106..2766
                     /gene="Chsy3"
                     /codon_start=1
                     /product="chondroitin sulfate synthase 3"
                     /protein_id="XP_225912.2"
                     /db_xref="GeneID:291577"
                     /db_xref="RGD:1560819"
                     /translation="MAVRSRRPWVSVALGLVLGFTAASWLIAPRVAELSEKRRRGSSL
                     CSYYGRSATGPRADAQQLLPQPQSQPRLQQSPPPASHQLPGPLRPEVAPGGPSLRSSP
                     WQQPAPLPQRRRGHKPEGATALPGAPAAKGEPEEEDGGAAGPRKGGRPRSSQNGSGDG
                     GAAAPTSGPGDFLYVGVMTAQKYLGSRALAAHRTWARFIPGRVEFFSSQQPPSAALGQ
                     PPPPLPVIALPGVDDSYPPQKKSFMMIKYMHDHYLDKYEWFMRADDDVYIKGDKLEEF
                     LRSLNSSKPLYLGQTGLGNTEELGKLGLEPGENFCMGGPGMIFSREVLRRMVPHIGEC
                     LREMYTTHEDVEVGRCVRRFGGTQCVWSYEMQQLFHENYEHNRKGYIQDLHNSKIHAA
                     ITLHPNKRPAYQYRLHNYMLSRKISELRYRTIQLHRESALMSKLSNSEVSKEDQQLGM
                     MPSFNHFQPQERNEVMEWEFLTGKLLYSAAENQPPRQSINSILRSALDDTVLQVMEMI
                     NENAKSRGRLIDFKEIQYGYRRVDPMHGVEYILDLLLLYKRHKGRKLTVPVRRHAYLQ
                     QPFSKPFFREMEELDINSLVESINSGTPATGFSFISNSLKILSSLQEPKEIGGHNEKK
                     VHILVPLVGRYDIFLRFMENFESTCIIPKQNVKLVIILFSRDSGQESIKHIELIQEYQ
                     NRYPSAEMTLIPMKGEFSRGLGLEMGSSQFDNDTLLLFCDVDLIFRGDFLQRCRDNTV
                     QGQQVYYPIIFSQYDPKVTRMGNSPTEGDFVFSKETGFWRDYGYGITCIYKSDLLGAG
                     GFDTSIQGWGLEDVDLYNKVIQSGLRPFRSQEVGVVHIFHPVHCDPNLDPKQYKMCLG
                     SKASTFASTMKLAELWLEKHLGVRDNRTLS"
ORIGIN      
        1 ccccgggtta ggggcgcgga gacccagccg gggcgacagc cagcctaggg aacccgcgac
       61 agcgcccaca ccgcccactc tgcctccgtg ctctgagctg ctacgatggc ggtgcgctcc
      121 cgccgcccgt gggtgagcgt ggcgctgggg ttggtcctgg gtttcaccgc cgcgtcctgg
      181 ctcatcgccc cccgggtggc cgagctgagc gagaagaggc gacgcggctc cagtctctgc
      241 tcctactacg gtcgctcagc taccgggccc cgcgcggacg cgcagcagct gctcccccag
      301 ccccagtccc agccgcggct ccagcagtcg ccgccccctg ccagccacca actccccggt
      361 cctctgcggc cggaggtggc gcccggaggt cccagtttga ggagcagccc ctggcagcag
      421 ccggctccgt tgccgcagag gaggcgagga cacaagcccg aaggtgcgac ggcgcttccc
      481 ggcgctccgg ctgccaaagg ggaaccggag gaggaggatg ggggcgcggc tggccctcgg
      541 aagggtggcc gaccgaggag tagccagaac ggcagcgggg acgggggcgc cgctgccccg
      601 acctccggac ccggggactt cctgtacgtg ggtgtgatga ccgcacagaa gtacctgggc
      661 agtcgcgcgc tggccgcgca ccggacctgg gcgcgcttca tccctggccg cgtggagttc
      721 ttttccagtc agcagcctcc tagtgctgcg ctcggccagc ctccgccacc tttgcctgtc
      781 atcgcgctgc cgggggtcga cgattcctac cctccccaga aaaagtcctt catgatgatc
      841 aagtacatgc acgaccacta tctagacaag tatgagtggt tcatgcgcgc cgacgacgat
      901 gtctacatca aaggtgataa gttagaagaa tttctaagat ccctaaatag cagcaagcct
      961 ctctacctgg gacagacggg cctggggaat actgaagaac ttggaaagct ggggctggag
     1021 cccggggaga acttctgcat gggaggacct gggatgatct tcagcagaga ggttctcagg
     1081 cgtatggtgc ctcacattgg cgaatgcctc agagaaatgt acacaactca cgaggacgtg
     1141 gaagttggaa ggtgtgttcg gcgcttcggt gggacgcagt gtgtctggtc ttatgagatg
     1201 cagcagctgt tccatgaaaa ctatgaacac aatcgcaagg gttacatcca agaccttcac
     1261 aacagcaaaa tccatgcagc catcacgctt catccgaaca aaaggcccgc gtaccagtac
     1321 agacttcata actacatgct cagccgcaaa atctccgagc tccgctaccg cacgatccag
     1381 ctccacaggg agagcgctct catgagtaaa ctcagcaaca gcgaagtgag caaagaggac
     1441 caacagctgg gaatgatgcc ttctttcaac cacttccagc ctcaggagag aaatgaggtc
     1501 atggagtggg agttcctgac agggaagctg ctttactcag ctgcagagaa tcagcctcct
     1561 cgacagagca tcaacagcat cctaaggtca gctctggatg acactgtcct gcaggtgatg
     1621 gagatgatca acgagaacgc caagagtagg ggccggctta ttgacttcaa ggaaattcag
     1681 tatggctacc gcagggttga tcccatgcat ggggtggagt acatcttgga cctgctactc
     1741 ctgtacaaaa ggcacaaagg aaggaaactg actgtgcctg tgaggcgcca tgcctacctt
     1801 cagcagccgt ttagcaagcc tttcttcaga gaaatggaag aactcgacat caacagtctc
     1861 gtggaaagta tcaacagtgg cactccggcc actggattct cctttatatc caattctcta
     1921 aaaatactct cttctcttca agagcccaaa gaaataggag ggcacaatga aaagaaagta
     1981 cacattcttg ttccactcgt tggaaggtat gatattttct tgagattcat ggaaaacttt
     2041 gaaagtacgt gtattatccc aaagcaaaat gtaaagctcg tcatcatcct tttcagcagg
     2101 gattctggcc aggagtccat caaacacatt gagctgatac aagaatacca gaacaggtac
     2161 cccagtgcag aaatgacgct cattcccatg aagggggagt tctccagagg tcttggtctt
     2221 gaaatgggtt cttcccagtt tgacaatgac acattgctgc tattttgtga cgttgacttg
     2281 attttccgag gagacttcct ccaacgctgt agagacaaca cagttcaggg acaacaggtc
     2341 tattacccca tcatcttcag ccagtatgat ccaaaggtga cccgtatggg aaattctccc
     2401 acagagggtg actttgtatt ctcaaaggaa actggatttt ggagagacta cggctacggg
     2461 ataacatgca tctacaaaag cgatctactg ggtgcaggtg gattcgatac ctcaatacaa
     2521 ggctggggac tggaagatgt agatctctat aacaaagtca tccaatctgg cttacggccc
     2581 ttcagaagtc aagaagtggg agtggtgcat attttccatc ctgttcattg tgatcctaac
     2641 ttggacccta agcagtataa gatgtgcttg ggatccaaag caagtacttt tgcctcaacc
     2701 atgaaactgg ctgaactctg gttagaaaaa catttgggtg tcagggataa tcgaactctc
     2761 tcctgacagt acaggcaata catactgcct ttggaaaggg gagtttacct cagtgttagc
     2821 tgttgttatt tttattttat tattgttatt ttattattat tgttgttgtt gatgtcgttg
     2881 ttgttgttat aattttattt tgttgtccca gtcttaaagt attcttggtt gtcttccaaa
     2941 gggtgtttgt tgacctcaag caagaagagt ctacagttca ctgatatttc acagtcagag
     3001 ttctactgaa gtcaatacgt gtattacttt gatatgactt tatttgagat tgagttaaac
     3061 tcatggcaat caaatggctt tggaagctca ttcatcacaa gagacagctt agaagaatgt
     3121 tctcttaggg cttaaagatg caatattgac ttttcttttg tttgtcaact tcaatgtgat
     3181 acaaatactt accagtgaaa ggtaccacaa aagtgcttta tgcttcccat ggggaaggga
     3241 ctctgtgaca gaaacttgag ttttgtaatt tatacgagga cttaaatata tagacaataa
     3301 ttttcttcat cgttagaaat ttttaaagta aatgaacacc tatgattgta tgtttatttt
     3361 ttaagaaaaa aaattttaaa aactgaggag tcctgttcca caagcaaccg gtactggcta
     3421 ccctggtctt ataattacaa actcctcaca gttgtctgct ataaatgcga aggaacttta
     3481 ttttctcaag gaaatatgat ttaatgagat attcatgtac attttagaag ctttatgaaa
     3541 caatgtcctt catttgctgg caagaagata aaatatgaca gaacctgttt atttataata
     3601 aaacacaggt ataaccgtat tctttttcaa aaacattgat aaagctctgt cgtttacttt
     3661 tcgtctcatt tgatgtaact tgtcgggtgg tgttcaccaa aacatgctgg tttcactaga
     3721 tgggaaaaaa ataccacagg atcacaagaa atgcattgtg ttctgcctta ctcccagctt
     3781 tcctaagtgg ttcacaagaa taaattctta attctgtaat ccaccatttg aaaggggact
     3841 cttaccagtc tctgaagact ggagttcctc taaccacaaa agactagttc agaatctgcc
     3901 ttcgagagta tatgaaaata taataacccc tggggaaact ataaataaca ttaattttat
     3961 aattatggga aaacacctag agaaatatct aatttccccg tttttctttc aacagaattt
     4021 ctagagaaac acaatcatat ttaagaagtg taagagagaa tggataccag taggcaagga
     4081 atcctcatga aatttatttt taaaaataat cttgcaaaca agtaacacat ttacacaaaa
     4141 tcaaaggcaa atgcttaaat ctctgtgatt atgtggcttt cttacattcc ttcctggtac
     4201 cacccagact gctgttctgg ctgacatggt ctgtgtgctt gtctttagtt tctaacgaag
     4261 aaaagataca tctttttcag tttatcttgt atgaacaaag tgaagaaatt gactttagtt
     4321 tttcaccaac taagaaaaca agtttcatca aaattatttt gagcaccttt ctcacaaact
     4381 gttgtcacca ttgggaacag acttccacat ggccacaaaa cggtgtaaaa acatttcttc
     4441 ctgaaaatat tttcagggct tcaaaataac attgtttact attgagaaaa gcaggatgga
     4501 aatctccctg tctaaacaca taatcttagt aattctcagt tccctagaaa gggaagaatt
     4561 aatgacattt tcttttttaa aatcttgaca gggacagcaa tttaaaatta acctttcttc
     4621 cacattgtct caggttttca caaatactta ttttaatagt ttactttctt atataactta
     4681 gctcttttat atactttatt ttcataaaaa gcaaatgtgt tagcattcgg tgagttattt
     4741 tgcttaatta ttaccaaatg gtcatgatta actaatattt ttttccagag ctgaggaccg
     4801 aacccagggc cttgcacgtg ctaggcaagc gctctaccac tgagctaaat ccccagcccc
     4861 ttaactaatg ttttagcaat gtatgtgagc ctaccatttt ctttaagata aatgaatgat
     4921 acaagaggtt tttactgaat aggaaacata aatgcctcat ttaaaatact ttaagttgta
     4981 gagttaccca agggacaaag cagtgtttta tttttatcac tgcttccttt atttgtgaga
     5041 ttataataaa gtttcatcat tcaccctgcc atccctcata acctctgttg ccctctttca
     5101 aatccttgat ccctttctta ttgttgttaa atgtatatgt cttatattta tatatcccta
     5161 agtataacct tctccgtctt ataacatcag ttgtgtgtat attttcagag ctaatcactt
     5221 ggcattggat aaccaatcgg tgtgctcttc cctgaagaag actgtttctc ccactctcag
     5281 catttcttag ctgctcatag ttgtttgcag ggttgatgta gggttaattg atggaaccgt
     5341 gtagaagaaa tgaggggcta tagagatctc atccgaatgt aactgcgaat cagcactata
     5401 tatatatata tatgtatgta taaataagtg tgtccaaatg tattctataa tttaacatgg
     5461 gtttctgaca agtttttttt caggtaatgg aggattccct gaagatttaa gggtcttgat
     5521 ataagtaaaa ttgagtttgt cctcttaata tggtatttgt tttctcagtg tattacggtt
     5581 acacaaaaat acgtggatgc agtcagaggt aaaagatgtg ctgtcccagt tgtacaaaca
     5641 cagctttctc ttatttgtgt atctgtgaac actttttatc aaatatcacc ttcaaaagtc
     5701 cccttgtcct tcagcaacac cacaggtaag tgactatccg ctcaacagca tgcaacgcgt
     5761 tttacttgaa ttttcctctt aagtacaatt ctcaaaatag ctctcaagat aattcagaat
     5821 attttatatg ttcagcagat gaagaaacag aggtcttcat caactgatgg actctggaga
     5881 gttcaggttt aagccaaagc atatctgaat gggaagcact tgccctgggc cactgccaaa
     5941 catggcttca cggggattgg gcaggatata gttatggacg gaagaaaaaa ttatcaacat
     6001 agatgtattt tatcccatct tgaacttgtt tctgttgcca cctgcctatt ttaaataatt
     6061 aatagtttga gatctgtgta caggaatgaa atattcaagc gtgtgttcat aatccaagga
     6121 ggtaaataaa tgatcaccag aaacatagtc gataaagtaa cattttaaca taagaagttg
     6181 taaggcagca gcacatggct gggacaactt attgatggcc cagattaact ctgaatgttt
     6241 ccttctagga actgagctca gtatacgaga ttcctttcta tcagcttaat tgttcacacc
     6301 ttcactcagc taaactcata atgttgtccc agggagaaca ccataggccg aactggatct
     6361 ggaaatttgc cttctctcct atctccctcc taacagcaag ttggttcatg tagagaaata
     6421 tagcaatgca aatctccagt agcccatgaa atatctgtag cttcatgttg gccttgatga
     6481 tactatttga atgtggaagg aaagctttct ctacattctg ctcatgtggc cgagctaacc
     6541 actgtcttcc cactgtctct tgtgtccgtc aattgcctgt gatcctgtac actataagaa
     6601 gccagtgtgc tttactctag tggcttatct actgctagga atacggaaac ttgtgcactt
     6661 actttctagt taatgcttta ttactaaagg tttcattttc agaaggtgcc ctgggttggg
     6721 gggtgctgca ggataagcca acaaggggat gtcttccagg ataataaaag aagagatttt
     6781 tacctgtt
//
