LOCUS       NM_001170470            1769 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus carbohydrate sulfotransferase 9 (Chst9), mRNA.
ACCESSION   NM_001170470 XM_001073363 XM_226142
VERSION     NM_001170470.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1769)
  AUTHORS   Okuda,T., Sawada,T., Nakano,H., Matsubara,K., Matsuda,Y., Fukuta,M.
            and Habuchi,O.
  TITLE     Mouse N-acetylgalactosamine 4-sulfotransferases-1 and -2. Molecular
            cloning, expression, chromosomal mapping and detection of their
            activity with GalNAcbeta1-4GlcNAcbeta1-octyl
  JOURNAL   J Biochem 134 (1), 111-120 (2003)
   PUBMED   12944377
REFERENCE   2  (bases 1 to 1769)
  AUTHORS   Hiraoka,N., Misra,A., Belot,F., Hindsgaul,O. and Fukuda,M.
  TITLE     Molecular cloning and expression of two distinct human
            N-acetylgalactosamine 4-O-sulfotransferases that transfer sulfate
            to GalNAc beta 1-->4GlcNAc beta 1-->R in both N- and O-glycans
  JOURNAL   Glycobiology 11 (6), 495-504 (2001)
   PUBMED   11445554
REFERENCE   3  (bases 1 to 1769)
  AUTHORS   Kang,H.G., Evers,M.R., Xia,G., Baenziger,J.U. and Schachner,M.
  TITLE     Molecular cloning and expression of an
            N-acetylgalactosamine-4-O-sulfotransferase that transfers sulfate
            to terminal and non-terminal beta 1,4-linked N-acetylgalactosamine
  JOURNAL   J Biol Chem 276 (14), 10861-10869 (2001)
   PUBMED   11139592
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000018.1.
            
            On or before Dec 20, 2009 this sequence version replaced
            XM_226142.4, XM_001073363.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643295.55523.1,
                                           SRR26643291.40061.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN12840110 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-139               JAXUCZ010000018.1  7090646-7090784     c
            140-178             JAXUCZ010000018.1  6988567-6988605     c
            179-216             JAXUCZ010000018.1  6882534-6882571     c
            217-1769            JAXUCZ010000018.1  6851831-6853383     c
FEATURES             Location/Qualifiers
     source          1..1769
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="18"
                     /map="18p13"
     gene            1..1769
                     /gene="Chst9"
                     /note="carbohydrate sulfotransferase 9"
                     /db_xref="GeneID:291770"
                     /db_xref="RGD:1307302"
     exon            1..139
                     /gene="Chst9"
                     /inference="alignment:Splign:2.1.0"
     CDS             40..1284
                     /gene="Chst9"
                     /note="carbohydrate (N-acetylgalactosamine 4-0)
                     sulfotransferase 9"
                     /codon_start=1
                     /product="carbohydrate sulfotransferase 9"
                     /protein_id="NP_001163941.1"
                     /db_xref="GeneID:291770"
                     /db_xref="RGD:1307302"
                     /translation="MKAKQVFFSVLLFGTAGLLLFMYLQAWVEEHHAGRIEKKREQKG
                     VSVTTGKIQKQSANQNSEVHIPEDLKKKGGNLLNLERPTRVLRKSSHSQRENRAPGSA
                     TETYQGAKIRVFQKPILMYWPLATQPLNKSSVQGNKWKKAEATQEKRRSFLREFCKKY
                     GGVNDPKANIFHIVSRIYVEDKHKILYCEVPKAGCSNWKRILMVLNGLASSAYNISHD
                     TVHYGKHLKTLDSFDLKGVHMRLNTYTKAVFVRDPMERLVSAFRDKFEHPNSYYHPVF
                     GKAIIKKYRPNATAKALNNGSGVKFKEFAYYLLDAQRPVGMDIHWERVSKLCYPCLID
                     YDFVGKFETLEEDANYFLQLIGAPKELKFPNFKDRHSSDERTSAHVVRQYLKDLSAAE
                     RQLIYNFYHLDYLMFNYTTPHL"
     exon            140..178
                     /gene="Chst9"
                     /inference="alignment:Splign:2.1.0"
     exon            179..216
                     /gene="Chst9"
                     /inference="alignment:Splign:2.1.0"
     exon            217..1769
                     /gene="Chst9"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 attcagacat gaagagaaac acagccgtct gaactggtca tgaaagccaa acaagtcttc
       61 ttttctgtcc tgctgtttgg gacagcaggg cttctgctct tcatgtactt gcaagcatgg
      121 gttgaagagc atcatgcagg gagaatagag aagaaaagag aacagaaagg agtatcggtg
      181 actacaggaa aaatccagaa acagagcgcc aatcagaact ccgaggttca catacccgaa
      241 gatctaaaga agaaaggggg aaatctgctc aacctggaga gacccactag ggttttaagg
      301 aagagcagcc attcccaaag ggagaaccga gctcctggat cagcaactga aacgtatcaa
      361 ggagctaaga ttcgagtttt tcagaaaccc atcctgatgt actggccact ggccactcag
      421 cccttaaata aaagttcagt ccaaggcaac aaatggaaga aagcagaagc aacccaagag
      481 aaacgtaggt ccttccttcg tgagttttgc aagaaatatg gtggagtaaa tgatcccaaa
      541 gccaacattt ttcatatagt atccaggata tatgtagaag acaaacacaa aatcctgtac
      601 tgtgaagtac caaaggctgg ctgctctaac tggaaaagaa ttctgatggt cctaaatgga
      661 ctggcttcct ctgcatacaa tatctcccac gacactgtgc actacgggaa gcatctaaaa
      721 acactggata gctttgactt aaaaggggta cacatgcgtt tgaataccta taccaaagct
      781 gtgtttgtta gggatcccat ggaaagatta gtgtctgcat ttcgggataa atttgagcat
      841 cccaatagct actaccatcc agtgtttggg aaggcaatta tcaagaaata ccgaccaaat
      901 gccactgcca aagcattaaa taacggatct ggggtcaaat tcaaagaatt tgcctactat
      961 ttgctagatg ctcaacgtcc agtaggaatg gatattcact gggagagggt cagcaaactg
     1021 tgttatccat gtttgatcga ctatgacttt gtagggaagt ttgagacatt agaagaagat
     1081 gccaattact ttctacagtt gattggtgct ccaaaagagt tgaaatttcc aaactttaag
     1141 gacaggcact cctctgatga aagaaccagt gcccatgtgg tgaggcagta tttaaaggac
     1201 ctgagcgcag ccgaaaggca actcatctac aacttttatc acttggacta tttgatgttt
     1261 aattacacta ctccacattt ataatttgca ttcattttct aaagccctgc atagacttaa
     1321 tgatgatggc ctcaaatcag ctactgtaat tgtcctacaa ttctctgtat ggaggaaatt
     1381 tagctaagtg aagttgtctt gattgaatga agtttctttt ttaaccaaag agtatgacag
     1441 caattggcac aaagttattg gaaaatcatc tcaaagagac atgtaaacaa cttgatgtgc
     1501 ttttaaatgt tgggaaaaga gttgttttgg cattgtagct tatactgtgg aagcaataac
     1561 ctagccagct gttacattca ccaaggaagc ctcttgcatg taaaataaag gggtcaaaat
     1621 ggcgaggatt gtgtatccaa atcctggcaa gcattgtgat atgcatgaag cagtgcttag
     1681 cagtctgtgg catttacagc aaatgattgg atggttttct tataccctga atcttcatat
     1741 cctgtgatga taaatccatt tttaaacat
//
