LOCUS       NM_001191974            1718 bp    mRNA    linear   ROD 21-MAR-2023
DEFINITION  Rattus norvegicus carbohydrate sulfotransferase 13 (Chst13), mRNA.
ACCESSION   NM_001191974 XM_575606
VERSION     NM_001191974.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1718)
  AUTHORS   Kang HG, Evers MR, Xia G, Baenziger JU and Schachner M.
  TITLE     Molecular cloning and characterization of
            chondroitin-4-O-sulfotransferase-3. A novel member of the HNK-1
            family of sulfotransferases
  JOURNAL   J Biol Chem 277 (38), 34766-34772 (2002)
   PUBMED   12080076
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JACYVU010000148.1.
            
            [WARNING] On Apr 3, 2024 this sequence was replaced by
            NM_001191974.3.
            
            On Oct 13, 2022 this sequence version replaced NM_001191974.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMEA5756307,
                              SAMEA5760396 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-105               JACYVU010000148.1  20167838-20167942   c
            106-188             JACYVU010000148.1  20161263-20161345   c
            189-1718            JACYVU010000148.1  20154024-20155553   c
FEATURES             Location/Qualifiers
     source          1..1718
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q34"
     gene            1..1718
                     /gene="Chst13"
                     /gene_synonym="RGD1562825"
                     /note="carbohydrate sulfotransferase 13"
                     /db_xref="GeneID:500257"
                     /db_xref="RGD:1562825"
     exon            1..105
                     /gene="Chst13"
                     /gene_synonym="RGD1562825"
                     /inference="alignment:Splign:2.1.0"
     CDS             6..1028
                     /gene="Chst13"
                     /gene_synonym="RGD1562825"
                     /EC_number="2.8.2.5"
                     /note="carbohydrate (chondroitin 4) sulfotransferase 13"
                     /codon_start=1
                     /product="carbohydrate sulfotransferase 13 precursor"
                     /protein_id="NP_001178903.1"
                     /db_xref="GeneID:500257"
                     /db_xref="RGD:1562825"
                     /translation="MGRRSCCRRPLPVVASLGAALLFLCAAPRALRPAFENKVLGSGW
                     FGGERKSPLQLLRELDQGPRSAMAEVHQQRRELLRRACSRHTRRQRLLQPEDLRHVLV
                     DDKHRLLYCYVPKVACTNWKRVLLALRGRGDPGAIPAHEAHEPGLLPSLADFAPAEVN
                     RRLRDYLTFLFVREPFERLASAYRNKLARPHSAAFQRRYGTRIVRRLRPHAQPDALAR
                     GHDVRFAEFLAYLLDPRTRRYEPFNEHWERAHALCHPCLVRYDVVGKFETLADDAAFV
                     LHLVGEPGLRFPAPPLRPEKDLTRVQARRLFQDISPFYQRRLFDLYKMDFLLFNYSAP
                     SYLRLQ"
     exon            106..188
                     /gene="Chst13"
                     /gene_synonym="RGD1562825"
                     /inference="alignment:Splign:2.1.0"
     exon            189..1718
                     /gene="Chst13"
                     /gene_synonym="RGD1562825"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 acagcatggg aaggcgctcc tgttgccggc ggcccttgcc ggtggtggca agtctgggtg
       61 ctgcacttct gttcctgtgc gccgcgccgc gcgccctgcg tcccgcattt gaaaacaaag
      121 ttctgggctc cggctggttc ggaggagaga ggaagagtcc cctacagctg ttgcgggaac
      181 tggaccaggg cccgcgctct gcgatggccg aagtgcacca gcagcggcgc gagctgctcc
      241 gccgggcctg cagccgccac actcgacgcc aacgcctgct gcagcccgag gacctgcggc
      301 acgtgctggt ggacgacaag caccggcttc tgtactgcta cgtgcccaag gtggcctgca
      361 ccaactggaa gcgcgtgctg ctggcgctgc gcggccgtgg ggacccggga gcaatccctg
      421 cgcacgaggc gcatgagcct ggtctgctgc cctcgttagc cgactttgcg ccagctgaag
      481 tcaaccggcg gctgcgcgac tacctgacct tcctctttgt gcgcgagccc ttcgagcgcc
      541 tggcctcagc ctaccgcaac aagctggcgc ggccacacag cgcggccttc cagaggcgct
      601 atggcacgcg catcgtgcgt cgcctacgac cgcacgcgca gccggatgcg ctggctcgcg
      661 gccacgacgt gcgctttgcc gagttcctgg cctacctgct cgacccgcgc acgcgccgct
      721 acgagccctt caacgagcac tgggagcgcg cgcatgcgct gtgccatcca tgcctagtgc
      781 gctatgatgt agtgggcaag tttgaaacac tggcggatga tgctgccttt gtgctgcacc
      841 tggtgggcga gcctggcctg cgcttccctg ctccaccgct gaggccagag aaggacctca
      901 cgcgtgtcca ggcccggcgc cttttccagg acatcagccc cttctaccag cgtcgcctct
      961 ttgacctcta taagatggac tttctgctct tcaactactc cgctccctcc tacctgcggt
     1021 tgcaataagg gtgttgggtg caatagggcc tgtggctgct gtgaccagga ggccatcagg
     1081 aggtctggaa tgaacctggt agtgtggatt ggagacccat tgtcatacct tatccagtgg
     1141 gcctggccac tgcttcacca tacacctgtc tggctgtttg tacctttagt ttgatgcctg
     1201 atctcctctt gcagatgtca ggctttttcc taagacccca ggtttgtggt tttttttttt
     1261 tttttttttt tgtttttgtt tttgtttttg tttgtttgtt tgggagaggt catttctcgg
     1321 tcttgtctgt ggagaacctg tccatggcat ggtgctacaa gacagaatgc catggtttgg
     1381 ttcagtgtgg cctaaggtcc agtcctgtgt tctcttctct ccgactggca agggcagaca
     1441 tggccagcga gaagctgttc cctgatcagc ttcagggcga gagtttggcc atccatgtca
     1501 gcagttactt cttgggagtt aacatgagct ccccgccacc ctggcagtca caggatggtg
     1561 agcagtacca ctccacttct agctagctga tctaccttta atctcagtct tgcaagaggc
     1621 tggattttca ccgtgtcagc agaggccagg atgtaatatg gtgacagctt gttcagctct
     1681 ctttttttaa aaaataaata tgttttgtta cattttca
//
