LOCUS       XM_039079036            6248 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus carbohydrate sulfotransferase 11
            (Chst11), transcript variant X3, mRNA.
ACCESSION   XM_039079036
VERSION     XM_039079036.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051342.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039079036.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6248
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6248
                     /gene="Chst11"
                     /gene_synonym="C4ST1"
                     /note="carbohydrate sulfotransferase 11; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 28 ESTs, 9 long SRA reads, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     3 samples with support for all annotated introns"
                     /db_xref="GeneID:314694"
                     /db_xref="RGD:1308400"
     CDS             1245..2120
                     /gene="Chst11"
                     /gene_synonym="C4ST1"
                     /codon_start=1
                     /product="carbohydrate sulfotransferase 11 isoform X3"
                     /protein_id="XP_038934964.1"
                     /db_xref="GeneID:314694"
                     /db_xref="RGD:1308400"
                     /translation="MLSLAFELELSNTAILHQMRRDQVTDTCRANSAMSRKRRVLTPN
                     DLKHLVVDEDHELIYCYVPKVACTNWKRLMMVLSGRGKYSDPMEIPANEAHVSANLKT
                     LNQYSIPEINHRLKSYMKFLFVREPFERLVSAYRNKFTQKYNTSFHKRYGTKIIRRQR
                     KNATQEALRKGDDVKFEEFVAYLIDPHTQREEPFNEHWQTVYSLCHPCHIHYDLVGKY
                     ETLEEDSNYVLRLAGVSGYLKFPTYAKSTRTTDEMTTEFFQNISAEHQTQLYEVYKLD
                     FLMFNYSVPNYLKLD"
ORIGIN      
        1 gaatgcaata atggttgcac acctctgtaa atgcacaaac gctgtcttac tgtacacttt
       61 aaatgggtgt atctcccaca ggcacgccca gtggcttgtc tcctaggtga cgctagactc
      121 tgtcaagttg acagtactca ccacaaatgt atcagttatc tgggaagata ccccattcca
      181 gcttacccat tactacctca tggggcatta tgagaaaaga ttgaaacctg aagtcaatga
      241 tttgaggaga actggtccct agaccgtcag aagacagggc tgactgccga ggctcattag
      301 catccgttcc aacacccatg ttaggagctc acgggacctc cattctagat gctgcacctg
      361 acccaggcga agtggctgtc atcagcattt ggaattggct gaattctaaa cagggttcat
      421 caggactgac tgccttacga ctctccataa aggcaggcta tgtaaagaga gccacttagt
      481 atgaggggct ggcgaatccc tcattgcaca gaccccgaag gccagtgact ggcacatttc
      541 cgagcttttg tctctgttcc agtgtaaagt ggcagggtgt cactgctgac caagaggacg
      601 tgtgtcttgc tcatgggagg gtcagccttt tgatctcttt agtcctttga ctgctggaat
      661 aaagcccatc catcttaaag agggcccctg cctctcctgt ctgaggagcg cctgcgggga
      721 ctatggctcc gggctctgcc cttagagtca gattgcacga gtagacatgg acctttgtac
      781 aggtgactag ggattacccc ggtggacatg ggctcaggat taccccggtg tgggccccac
      841 cagtactatc tgaccccatc tcgacggtgt atagcctttt tctccctaca gtgcctctga
      901 gagacagaca gatgagagac agacaggggt ggcggtgttc cctccatggc tggggattta
      961 accacactgg cacatgttga tcacgggaag gcacctcctt ttcggggtgc cacacaccat
     1021 cttttaagat gttccatcca gcggtggcct cctctgacag agagcagggc taatcggggt
     1081 ctggatttga atgttgccgg tgacaccgcc tcccccagct tcggtaacca tagcaactag
     1141 tcatggctac aacctgttcc tgactctgct gggagaacgc ctcacaagct tcgtggccca
     1201 tctccgaacg gacgcatctc ccaaggataa gatacacgtc tgtgatgctt agtcttgcgt
     1261 tcgagctgga gctctccaac actgccatcc tgcaccagat gagacgggac caggtgacag
     1321 acacctgccg ggccaacagc gccatgagcc gcaagcgcag ggtgctgacc cccaacgacc
     1381 tgaagcacct ggtggtggat gaggaccacg aactcatcta ctgctatgta cccaaggtgg
     1441 cgtgcaccaa ctggaagagg ctcatgatgg tcctgagcgg ccggggcaag tacagcgacc
     1501 ccatggagat cccagccaac gaggcccacg tgtcggccaa cctgaagacc cttaaccagt
     1561 acagcatccc agagatcaac caccgcttga aaagctacat gaagttcctg ttcgtgcggg
     1621 agcccttcga gaggctggtg tctgcctacc gcaacaagtt cacgcagaag tacaacacct
     1681 ccttccacaa gcgctacggc acgaagatca tccggcgcca gcggaagaac gccacgcagg
     1741 aggccctgcg caagggggac gatgtcaagt tcgaggagtt cgtggcctac ctcatcgacc
     1801 cccacaccca gcgcgaggag cccttcaacg agcactggca gacggtctac tccctctgcc
     1861 acccatgcca catccactac gacctcgtgg gcaagtacga gacgctggag gaggactcca
     1921 attacgtact gcggctggcc ggggtgagcg gctacctgaa gttccccacc tatgcaaagt
     1981 ccacccgaac taccgacgag atgaccacgg agttcttcca gaacatcagc gccgagcacc
     2041 agacacagct gtacgaagtc tacaaactgg actttttaat gttcaactac tcagtgccaa
     2101 actacctgaa gttggattag agggctgcgg ggggcggggg gggcggttgg ggagagggag
     2161 agaatcctgc tttttaattt aagattttta tttgtcaaaa gaattctatg gataccgggt
     2221 tattttgtaa gttaatatgc ctttcggggg agatgctgcg agcggcatgg taagaattat
     2281 ttaaaaaaaa aatcctctgt ggggaaggac agctgtcttt gcaggggagc ggcgtggatt
     2341 ggccctgttt ttagaagcgg acccggcaac actgtccgca gggtgtcctt gtgttctggt
     2401 gaatcccaca aactgtgcgt cccataaagt ctaatgagtc ttatttatgg ttatttaaac
     2461 gtggtctctg tataggcttc tcactgtgtc agcagcctgc tcctgtcttt ctggaggaaa
     2521 ggacagtctg tgccttgctg gctatgtctg gtttgggggg cgtggttacc tccccactgt
     2581 cccgtgcgga atcccacggt gacagctgat ggattaccac cgttcaagaa acactgctag
     2641 aaataagtac attgtccttg cggtaagaaa cagggatgag actggttcaa accgactgct
     2701 agcaacccca aagtcccttg cggtaaagag atgcaaattt tttaacccaa gaagagagcg
     2761 gatgatagca atttctcttc accaaaatta gcaggctcta agaatagtct tttttgtgaa
     2821 aatctttaac tggcactttc cagttctagc gaaggcagaa taatggttac tttatagtca
     2881 ttaagtattt attgagcata tactatttcc caggcttgac tgcaggtaga acgttaagtt
     2941 gaaaccagga gccttggcct tcgacaagct ttatgtgaac acagggcatc catctcaaca
     3001 gtgaaccaat ccccagcctt atggtcttca cacaggcttt ggactattct caagtggccc
     3061 agagagtcca tgaccccagc aaatttacat ttttccacag ctcaaatttg aaagccacac
     3121 atttggatcg ggccacttaa ctagctaagt agttcactgc ccaacacaag aaatggcaga
     3181 aacctttttc atcatgtata tctattgcag tttcttggaa gtagatgcct ataagccaca
     3241 gtattctcca ggcacaaaga tggaggacca cagcgatcga ttagtgatgt ctgccttggc
     3301 taagggaagg ggagaacatt tgtcaagtgc ctcctactgt gatctccagt ccacatcttg
     3361 tcctgcctgc cacttaaaag agtgtgctcc atatgtctgg agaccagcaa agttcaggtg
     3421 tgaacgtcaa aggtggcgtg ttggtaccca caggcacatg cagaccctcc cgtgtcctgt
     3481 gttggcagag tgtcttagga cctccctttc ctccagaagg ctggaaactt gctgtttccc
     3541 gttccttgct gatcaacacc caaacctatt cctcatttct agttgtttct gatgcttctt
     3601 ggttgacatt tgagccgcat tcccattaca gccagtgtcc gggtacgtag caggtgctgt
     3661 acataatagt tctaatgatg gggagggagt agggtgtaaa ttttgctttt ctgtgttttt
     3721 gtgggttttt gtttgttttg atgcagtaca gagtgaaggg gtaagaatat gctgaaaaac
     3781 ataaaactga ataatttatt cacagaaact attaaaatgg tattgttggg ctcacagcaa
     3841 gcctgacagc agctgtagct gctactcgtt ctcactgagg agattatttt atttaatgtg
     3901 agggagatgt gaggcagggt ggctggctgc ggcttcttat aaaacgcagg taccttcccc
     3961 aatgtctctc ccctcgcctt tgatagatgg gtttatgtca tgtgcttggc tgtccctgaa
     4021 ataggggggg ggggctgttg tcctcagaac ccgggcttcc gcccatgtga cagtctgtga
     4081 tgttgctgat gcatgtgcca cagagcccag cctctccagg aagtcagttt ggaggagttt
     4141 gtggtcacat atccttagaa aacaaaactg agtcaggttc ctctctgcag gaatttttca
     4201 gagccttgaa tacgtacgtg gtctgccttg tgaatctcgg agaacgtagc atttccgggc
     4261 tgcgtgacct gggtgtcctg catggcagac catgtcttac ctggtttttc acacagtagc
     4321 ctttggtgag ggtgatctag cctgtcagag gtctgcaaag attgacagct gcttcctagg
     4381 tccttccaca aataagcaga aacagcatct gcatgggaac tttatcagaa ttgcgcttta
     4441 cctaactggg gtggctccat ccagacactg cccccagaca gtgatcccgc ccctccaagc
     4501 acagtggagg gaagtctagg gtgtcgtgga gtggggcagg tggcataagg atgcaaaact
     4561 atctcccact ctgtggcctt caaggccgct tggtggtgac gatggcctca tggaaaatac
     4621 ttctcacttc cacccacagt ttggaactgt tacccgtgtg cttctggagt ttttaaatgg
     4681 aaattcgtgt tgacttccat gtttctcatt tctgtttgtc tgttgtctgt ggtacagtgc
     4741 tgtgtgcaga tggtactcac tccattcctc tctaatgtga gaaagattgc ccttctgggg
     4801 acagcgtgtc agtacgcttc cagagtgagg ggctcttcct cctgtcttgt gttcacactt
     4861 cgtagtgaca attttttaaa aaatgtgtac cagctcgact gtttattgta gaatgtagaa
     4921 aggattctgt gtccctcgct aaagacatcc attggtgaag tgtgtttgga aacccaagtg
     4981 tttttctact ggaaaaacga tgttgaagaa gcttcctctc gcatgcctct cgtgcttagc
     5041 tagaaagggg gaactgtccc agctctgagc cactgttcaa aggtgcagct gtgtttttag
     5101 gaccagatac aggcagaatg gtaagcacat gcctgcttag cttacccatt tatcagaaaa
     5161 gtttagaata cgagccacag gggtccctgc ctacagtccc tacagcctcc ccctgcccca
     5221 gtacctttct cagctggtct gggaataatc ggggcagccc atttgacggg gtctctctcg
     5281 gtcaggcctt tcctcctggt cccgagagca agcctttctc ttctgtgtgt tcagccacaa
     5341 ggagaattat gggaaccaga aacttctctc cggccagccc ttctgaggac acaggtcctg
     5401 cccatgctcc aagagtgctc ctggacattg tgtaaggccc taggactctt agctcaaatg
     5461 ataatgattg cattgctatc ctgctttaac tgacaaaacc acagaggttt tgcttgtttc
     5521 cctactctct tcctctgccc aggcctcctc catacatata caggcacaca tgggtatgca
     5581 tacacacact tgcacagtag acatacacac acacatgcac atatgggttt gcacacacat
     5641 gcacatgtgg gtgtgcacac acacatgcac agtagacatg ctcacacaca catgcagaca
     5701 tgggtatgca cacacacatg cacacatgaa tgtgcacaca cacatacaca gattgcccga
     5761 gcctgtgcac tcctggtgcc caactcccat cctggcccac ctctctgtca gcaggactga
     5821 ctccatcact ccctcaggtt ttgcccacca gcatccacca gcttttccct cagcacagcc
     5881 cctttgaata gacaacagga ccttctagaa ccagctgagc ccttggacag cagcaggcaa
     5941 cttttgatct gctctcatcg ggtacaaagg gtggtatccg tattctcttc tgagcatgct
     6001 cagtaaggca tatggacata gaatttaaca tccctgagga gtgtgtgttt tttacatatt
     6061 tgtatgcagt cgaggagggc ctgttgtaga attctctccc tgtatcttac tatactgtta
     6121 aagaagctga attccatgtt gccaacagat gcgtgaaatg ttcccgaaac ttcctccagg
     6181 aaaagccatt caagcctgat tatttttcta agtaacttca attaaattga agaaaaaaaa
     6241 aaccagaa
//
