LOCUS       XM_039087914            3076 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus chordin (Chrd), transcript variant X5,
            mRNA.
ACCESSION   XM_039087914
VERSION     XM_039087914.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051346.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039087914.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3076
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="11"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3076
                     /gene="Chrd"
                     /note="chordin; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 2 mRNAs, 7 ESTs, 3 long
                     SRA reads, 4 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 20 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:117275"
                     /db_xref="RGD:620181"
     CDS             929..2677
                     /gene="Chrd"
                     /codon_start=1
                     /product="chordin isoform X3"
                     /protein_id="XP_038943842.1"
                     /db_xref="GeneID:117275"
                     /db_xref="RGD:620181"
                     /translation="MDWLVLGELQMVLEKMGGPELRISGYITTRQSCDVLQSVLCGAD
                     ALIPVQTGAAGSASFILLGNGSLIYQVQVIGTGSEVVAMTLETKPQRKNQRTVLCHMA
                     GLQLGGHMAVGVCSGLGARGAHMLLQNELFLNIGTKDFPDGELRGHVTALCYSGHSAH
                     YDRLPVPLAGALVLPPVRSQAAGHAWLSLDTHCHLHYEVLLAGLGGSEQGTVTAHLLG
                     PPGMPGPQRLLKGFYGSEAQGVVKDLEPVLLRHLTQGTASLLITTKSNPRGELRGQVH
                     IASQCEVGGLRLASEGVRMSLAPNGEAATSPMLPAGPGPEAPVPAKHGSSGRPRDPNT
                     CFFEGQQRPHGARWAPNYDPLCSLCTCQRRTVICDPVVCPPPSCPHPVQALDQCCPVC
                     PEKQRSRDLPSLPNLEPGEGCYFDGDRSWRAAGTRWHPVVPPFGLIKCAVCTCKGATG
                     EVHCEKVQCPRLACAQPVRANPTDCCKQCPVGSGTHAKLGDPMQADGPRGCRFAGQWF
                     PENQSWHPSVPPFGEMSCITCRCGAGVPHCERDDCSPPLSCGSGKESRCCSHCTAQRS
                     SETRTLPELEKEAQRS"
ORIGIN      
        1 gcgaggtgcg cggtgccagg ggaccaaggg cctggtgggc agagcccgga gtaggcatta
       61 cggcaggagc aaccggacag cggccgccag ccaagcccgt ccccgcaggc tgctccttcg
      121 gcgggaaggt ctatgccttg gacgagacgt ggcacccgga cctgggggag ccttttgggg
      181 tgatgcgctg tgtgctgtgc gcctgcgaag cgagcgcagc aatctagatc cacagccggc
      241 tggcctggtc ttcgagtatc caagggaccc agagcatcgc agttatagcg atcgagggga
      301 acccggcact ggggagcgga cacgtggtga tggccacacg gactttgtgg cgttgctgac
      361 tggaccgagg acgcaggcgg tagctcgtgc tcgagtctct ttgctgcgct caagtttacg
      421 cttctctatc tcctaccagc ggctggaccg tcccagcagg gttcggttca cagaccccac
      481 aggcaacatc ctgtttgaac accctgctgc ccccacccaa gatggcctgg tctgtggggt
      541 gtggcgggca gtgcctcggc tgtctgtgag gctcctgagg gcagagcagc tgcgtgttgc
      601 ccttgtgaca cccactcacc cttcagaaga agtctggggg cctctcattt ggcagggtgc
      661 tctcactgca gagaccttca gtgccatcct gaccctggag gacccactgc agcggggtgt
      721 cgggggcata gccctgctca ctctcagtga cacagaagat gccttacatt ttttgctgct
      781 cttccggggt ctgctgggag gactagctca cgtccccttg aagcttcaga ttctccacca
      841 gggacagcta cttcgagagc tccaggccaa tgcctcagct caggagccag gttttgctga
      901 ggtgctgccc agccttacag accaagagat ggactggttg gtgctggggg agctgcagat
      961 ggtcctagag aagatgggtg ggccagagct acgcatcagc gggtatatca cgaccaggca
     1021 gagctgtgat gtccttcaaa gcgtcctctg tggggctgat gccttgatcc cagtccagac
     1081 gggtgctgct ggctcagcca gcttcatact gctaggaaat ggctccctta tctatcaggt
     1141 acaagtgata ggtacaggta gcgaggtggt ggccatgacg ctggagacca agcctcagcg
     1201 gaagaaccag cgcactgtcc tgtgccacat ggctggactc cagctgggag gacacatggc
     1261 tgtgggtgtc tgctctgggc tgggtgcccg aggggctcac atgctgctac agaatgagtt
     1321 gttcctgaat attggtacca aggacttccc agacggagag cttcgggggc acgtgactgc
     1381 cctatgctac agcgggcaca gtgcccacta cgacagattg cctgtgcctc tggcaggggc
     1441 actagtactg ccccctgtgc ggagtcaggc agcaggacat gcctggctgt ccttggatac
     1501 acattgccac ttacactatg aggttctatt ggctgggctt ggtggctcag agcaaggaac
     1561 tgtcactgct catctcctcg ggcctcctgg gatgccaggg ccccagcgac tgctgaaggg
     1621 attctatggc tcagaggctc agggtgtggt aaaagatcta gagcccgtgc tgctgcggca
     1681 cctgacacag ggcaccgcct ccctgcttat caccaccaag agtaacccta gaggagagct
     1741 acgcgggcag gtgcacattg ccagtcagtg tgaggtggga ggcctgcgcc tggcctcaga
     1801 aggagtgcgg atgtccttgg ctccaaatgg agaggcagct acatcaccca tgctgcctgc
     1861 tgggcccggc cctgaagccc ccgtaccagc caaacacggc agctctggga gaccccgaga
     1921 tcctaacaca tgtttcttcg aggggcagca gcgtccccac ggggctcgct gggcacccaa
     1981 ctatgaccca ctctgctccc tctgcacctg ccagagacgg acagtgatct gtgatcctgt
     2041 agtatgccca ccaccaagct gtccccaccc ggtgcaggca ctggaccagt gctgtcccgt
     2101 gtgtccagag aaacaacgca gtagagacct tcccagccta ccaaatctgg agccaggaga
     2161 gggctgctat tttgatggtg accggagctg gagggcagcg ggtacccgat ggcaccccgt
     2221 tgtgcccccc tttggcctaa ttaagtgtgc tgtctgcacc tgcaaggggg ccaccggaga
     2281 ggtgcactgt gagaaggtgc agtgtcctcg cctcgcctgt gctcagcctg tccgtgccaa
     2341 ccccaccgac tgctgcaaac agtgcccagt agggtcaggg actcatgcca agctgggaga
     2401 ccccatgcag gctgatgggc ctcggggttg tcgctttgct gggcagtggt tcccagagaa
     2461 tcagagctgg cacccatcag tgcccccctt tggggagatg agctgtatta cctgcagatg
     2521 tggggcaggg gtaccccact gtgagcggga cgattgctcg ccgccactat cctgcggctc
     2581 agggaaggag agtcgatgct gttcccactg tacagcccaa aggtcctctg agactagaac
     2641 ccttcccgag ctggagaaag aagctcaacg ctcctaggaa gcatccagaa gcacatgacc
     2701 aagaggatgg gcctgaactg ggagaaggag tggtgctgag gaccctgatt ctcctgcggg
     2761 aacccagtgc cttccgtgcc tctgttctgc ttcttctcct cccccactac ctctgggaac
     2821 cacgattcta caaggggaaa gactgctggg tcagaccaag gccatatcca cgcgaactcc
     2881 tgccctgttt tcttttggcc tctgtcccag aagcttaact cttttcttct gtacaaaaca
     2941 ccaccggctt attgggattc tttaatttat cctcactcag cactaagggt tccctcacac
     3001 cattcctgct gcccctgagc tgagcagagt cattattaga gatttttgta tttattaaaa
     3061 catctttttt ttttca
//
