LOCUS       XM_017597850            2996 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus chordin (Chrd), transcript variant X2,
            mRNA.
ACCESSION   XM_017597850
VERSION     XM_017597850.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051346.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_017597850.3.
            
            On Jan 21, 2021 this sequence version replaced XM_017597850.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2996
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="11"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2996
                     /gene="Chrd"
                     /note="chordin; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 2 ESTs, and 100% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 11 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:117275"
                     /db_xref="RGD:620181"
     CDS             494..2854
                     /gene="Chrd"
                     /codon_start=1
                     /product="chordin isoform X2"
                     /protein_id="XP_017453339.1"
                     /db_xref="GeneID:117275"
                     /db_xref="RGD:620181"
                     /translation="MPSLPAPPAPRLLLGLLLLGSRPAGGTGPEAPALPIRSEKEPLP
                     VRGAAGATGQRPPAKPVPAGCSFGGKVYALDETWHPDLGEPFGVMRCVLCACEAPQWA
                     RRGRGPGRVSCKNIKPQCPTLACRQPRQLPGHCCQTCPQERSNLDPQPAGLVFEYPRD
                     PEHRSYSDRGEPGTGERTRGDGHTDFVALLTGPRTQAVARARVSLLRSSLRFSISYQR
                     LDRPSRVRFTDPTGNILFEHPAAPTQDGLVCGVWRAVPRLSVRLLRAEQLRVALVTPT
                     HPSEEVWGPLIWQGALTAETFSAILTLEDPLQRGVGGIALLTLSDTEDALHFLLLFRG
                     LLGGLAHVPLKLQILHQGQLLRELQANASAQEPGFAEVLPSLTDQEMDWLVLGELQMV
                     LEKMGGPELRISGYITTRQSCDVLQSVLCGADALIPVQTGAAGSASFILLGNGSLIYQ
                     VQVIGTGSEVVAMTLETKPQRKNQRTVLCHMAGLQLGGHMAVGVCSGLGARGAHMLLQ
                     NELFLNIGTKDFPDGELRGHVTALCYSGHSAHYDRLPVPLAGALVLPPVRSQAAGHAW
                     LSLDTHCHLHYEVLLAGLGGSEQGTVTAHLLGPPGMPGPQRLLKGFYGSEAQGVVKDL
                     EPVLLRHLTQGTASLLITTKSNPRGELRGQVHIASQCEVGGLRLASEGVRMSLAPNGE
                     AATSPMLPAGPGPEAPVPAKHGSSGRPRDPNTCFFEGQQRPHGARWAPNYDPLCSLCT
                     CQRRTVICDPVVCPPPSCPHPVQALDQCCPVCPGECPAGEERETTQ"
ORIGIN      
        1 gtgtcgaggc ccgcctctcc tccccctctt tgcgccccct ggttcctccc ttccccctac
       61 tcactccgct cccccctcct ccagtccctc cctcctcccc tgccgggtcc cagcctgtcc
      121 ccctccccca ctcgcgatcc ggccgctgct gctgggccgg accccccggg ctcagccggg
      181 ctccttgtgg agccgccgcc gcgccccgtt tgctgaagag gaggccccgg gccgggacgc
      241 ctggcgcggg cataaaacgg gccagagccg gcgcctaggg cactagagtg gcgtacggcc
      301 cgggtcagcg cccctccgcc cgctctctcc cgccccgccc ggccgggagc ggactaggcg
      361 actgcgagac gagcccctcg ccactgcccc cctcctggcc ccggccccct cttgccggcc
      421 cgcctccggt ccggccctac tccctctcct gctccctcct cccgcccgcc tccccagctg
      481 tctgctccgc gtcatgccga gcctcccggc cccgccggcc cctcggctgc tcctcgggct
      541 gctgctgctc ggctcgcggc cggccggtgg cactggccct gaggcccccg cactgcccat
      601 ccgttccgag aaggagccac tgcctgtccg gggagcggca ggagcaaccg gacagcggcc
      661 gccagccaag cccgtccccg caggctgctc cttcggcggg aaggtctatg ccttggacga
      721 gacgtggcac ccggacctgg gggagccttt tggggtgatg cgctgtgtgc tgtgcgcctg
      781 cgaagcgcct cagtgggctc gccgtgggag gggccctggc agggtcagct gcaagaacat
      841 caaacctcag tgccccaccc tggcctgcag gcagccgcgc cagctgccag gacactgctg
      901 ccagacctgc ccgcaggagc gcagcaatct agatccacag ccggctggcc tggtcttcga
      961 gtatccaagg gacccagagc atcgcagtta tagcgatcga ggggaacccg gcactgggga
     1021 gcggacacgt ggtgatggcc acacggactt tgtggcgttg ctgactggac cgaggacgca
     1081 ggcggtagct cgtgctcgag tctctttgct gcgctcaagt ttacgcttct ctatctccta
     1141 ccagcggctg gaccgtccca gcagggttcg gttcacagac cccacaggca acatcctgtt
     1201 tgaacaccct gctgccccca cccaagatgg cctggtctgt ggggtgtggc gggcagtgcc
     1261 tcggctgtct gtgaggctcc tgagggcaga gcagctgcgt gttgcccttg tgacacccac
     1321 tcacccttca gaagaagtct gggggcctct catttggcag ggtgctctca ctgcagagac
     1381 cttcagtgcc atcctgaccc tggaggaccc actgcagcgg ggtgtcgggg gcatagccct
     1441 gctcactctc agtgacacag aagatgcctt acattttttg ctgctcttcc ggggtctgct
     1501 gggaggacta gctcacgtcc ccttgaagct tcagattctc caccagggac agctacttcg
     1561 agagctccag gccaatgcct cagctcagga gccaggtttt gctgaggtgc tgcccagcct
     1621 tacagaccaa gagatggact ggttggtgct gggggagctg cagatggtcc tagagaagat
     1681 gggtgggcca gagctacgca tcagcgggta tatcacgacc aggcagagct gtgatgtcct
     1741 tcaaagcgtc ctctgtgggg ctgatgcctt gatcccagtc cagacgggtg ctgctggctc
     1801 agccagcttc atactgctag gaaatggctc ccttatctat caggtacaag tgataggtac
     1861 aggtagcgag gtggtggcca tgacgctgga gaccaagcct cagcggaaga accagcgcac
     1921 tgtcctgtgc cacatggctg gactccagct gggaggacac atggctgtgg gtgtctgctc
     1981 tgggctgggt gcccgagggg ctcacatgct gctacagaat gagttgttcc tgaatattgg
     2041 taccaaggac ttcccagacg gagagcttcg ggggcacgtg actgccctat gctacagcgg
     2101 gcacagtgcc cactacgaca gattgcctgt gcctctggca ggggcactag tactgccccc
     2161 tgtgcggagt caggcagcag gacatgcctg gctgtccttg gatacacatt gccacttaca
     2221 ctatgaggtt ctattggctg ggcttggtgg ctcagagcaa ggaactgtca ctgctcatct
     2281 cctcgggcct cctgggatgc cagggcccca gcgactgctg aagggattct atggctcaga
     2341 ggctcagggt gtggtaaaag atctagagcc cgtgctgctg cggcacctga cacagggcac
     2401 cgcctccctg cttatcacca ccaagagtaa ccctagagga gagctacgcg ggcaggtgca
     2461 cattgccagt cagtgtgagg tgggaggcct gcgcctggcc tcagaaggag tgcggatgtc
     2521 cttggctcca aatggagagg cagctacatc acccatgctg cctgctgggc ccggccctga
     2581 agcccccgta ccagccaaac acggcagctc tgggagaccc cgagatccta acacatgttt
     2641 cttcgagggg cagcagcgtc cccacggggc tcgctgggca cccaactatg acccactctg
     2701 ctccctctgc acctgccaga gacggacagt gatctgtgat cctgtagtat gcccaccacc
     2761 aagctgtccc cacccggtgc aggcactgga ccagtgctgt cccgtgtgtc caggtgaatg
     2821 tcctgcaggg gaggaaagag aaacaacgca gtagagacct tcccagccta ccaaatctgg
     2881 agccaggaga gggctgctat tttgatggtg accggagctg gagggcagcg ggtacccgat
     2941 ggcaccccgt tgtgcccccc tttggcctaa ttaagtgtgc tgtctgcacc tgcaag
//
