LOCUS       NM_001106574            3763 bp    mRNA    linear   ROD 22-MAR-2023
DEFINITION  Rattus norvegicus chondroitin polymerizing factor 2 (Chpf2), mRNA.
ACCESSION   NM_001106574 XM_001056833 XM_216063
VERSION     NM_001106574.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3763)
  AUTHORS   Ghosh D, Lippert D, Krokhin O, Cortens JP and Wilkins JA.
  TITLE     Defining the membrane proteome of NK cells
  JOURNAL   J Mass Spectrom 45 (1), 1-25 (2010)
   PUBMED   19946888
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH474020.1.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_216063.4, XM_001056833.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMD00132261,
                              SAMD00132262 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..3763
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q11"
     gene            1..3763
                     /gene="Chpf2"
                     /gene_synonym="RGD1306404"
                     /note="chondroitin polymerizing factor 2"
                     /db_xref="GeneID:296733"
                     /db_xref="RGD:1306404"
     exon            1..1589
                     /gene="Chpf2"
                     /gene_synonym="RGD1306404"
                     /inference="alignment:Splign:2.1.0"
     CDS             1327..3639
                     /gene="Chpf2"
                     /gene_synonym="RGD1306404"
                     /EC_number="2.4.1.226"
                     /note="chondroitin sulfate glucuronyltransferase"
                     /codon_start=1
                     /product="chondroitin sulfate glucuronyltransferase
                     precursor"
                     /protein_id="NP_001100044.1"
                     /db_xref="GeneID:296733"
                     /db_xref="RGD:1306404"
                     /translation="MRLSSLLAVLRPMLPLILGLSLGCSLSLLRVSWIQGEGEDPCVE
                     AVGKPGGPQNPDLKHGLDQSDEDFKPRIVPYYRDPNKHYKKVLRTRYIQTELGSRERL
                     LVAVLTSRATLSTLAVAVNRTVAHHFPRLLYFTGQRGARAPAGMQVVSHGDERPAWLM
                     SETLRHLHTHFGADYDWFFIMQDDTYVQAPRLAALAGHLSINQDLYLGHAEEFIGTGE
                     QARYCHGGFGYLLSRSLLLRLRPHLDGCRGDILSARPDEWLGRCLIDTLGIGCVSQHQ
                     GQQYRSFELAKNRDPEKEGSPAFLSAFTVHPVSEGTLMYRLHKRFSALELERAYKEIE
                     QLQAQIRNLTVLTPEGEAGLSWPVGLPAPFIPHSRFEVLGWDYFTEQHTFACADGAPK
                     CPLQGASRADVGDAVDTALEQLNRRYQPRLRFQKQRLLNGYRRFDPARGMEYTLDLLL
                     EAVTQRGHRRSLARRVSLLRPLSKVEILPMPYVTEATRVQLVLPILVAEAPAALAFLE
                     AFAASVLEPREHALLTLLLVYGPREGRGGPDPFLGVKAAAAELERRYPGTRLAWLAVR
                     AEAPSQVRLMDVISKKHPVDTLFFLTTVWTRPGSEVLNRCRMNAISGWQAFFPVHFQE
                     FNPVLSPQRSPPGVPGAGPDPPSPGVDPSRGAPVGGRFDRQASAEGCFYNADYLAARA
                     RLAGELAGQEEEEALEGLEVMDVFLRFSGLHLFRAVEPGLVQKFSLRDCSPRLSEELY
                     HRCRLSNLEGLGARTQLAMALFEQEQANST"
     exon            1590..2154
                     /gene="Chpf2"
                     /gene_synonym="RGD1306404"
                     /inference="alignment:Splign:2.1.0"
     exon            2155..2337
                     /gene="Chpf2"
                     /gene_synonym="RGD1306404"
                     /inference="alignment:Splign:2.1.0"
     exon            2338..3763
                     /gene="Chpf2"
                     /gene_synonym="RGD1306404"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agaggaagcc gagggctggg ctgtgaggtg gcagtggctg caaagcggag ctcctcgccc
       61 ggcagcaggg tgggctcacc tgcgaggcgg ctccgtcggc tgtggggttt gggtgttcct
      121 gtccccctga ccggcatgac ctgagaaccc gctcggtctt actctacgcc gcgagctccc
      181 ttccgccgct cgagttctca gagcaaacca gctggacgcc gggccttctc tgcagtcgcg
      241 ggactaattt ctctgcagta ggcgattaat ttctgtctcc agacggccgg ctaggactcg
      301 ctctgtgcct cctgagggct ggcacggggc tgtggtcgcc aagggaataa tagggcactg
      361 actggcgcag gcaggtgtcc tgttggaagg tggtgagcct ctactggcct tcccagaccc
      421 cgcgtttctg taactgctgc tgtctctcgg gttgcttttg ctttatttgg ctttgtttga
      481 taacctctag ccacagcaag agtgtctgta attttgtctc ctgctgctct tcgaaatgtg
      541 ggcagcatag ctttgcagga cgagtaggat ggccagcaaa atggttccat cagccattgc
      601 tctcctctga gaggccagca gtgctgagtc actgtgactg ttcacctcat ttgggtgggc
      661 aggtgggtgg gcaccatgca tggttggtga tcttatctga caaggagggc atttctagag
      721 tctgtggatt tctttgacac tcaggagcag ggtggaagga ggcgctgacc ccttctcaag
      781 tgctagcctg cagccgcagt aagtcagcag tcccttctgg ggcctgaaga gacatagtgg
      841 gccaggatat ctgcaggata ggatagggcg gcagaggcag gccctttagg tcagactgct
      901 gtttgaatag tgcatgcact ttaccctgcc tgggtcatcg ggtgctgctg acttgaatta
      961 ggcccatgct tcaaatggct gtagaccttt tagggttagg cttggcagtg ttgtactttc
     1021 ttttttcttt ttactggact acagactgca ttcctagtag tgagtggcat tgttcacaca
     1081 gacattagtg ttttattgag gagtgtatca ctcatggcca ccgaagacca gacgtaggga
     1141 gttgggaaga ctttgtgggg atgctgggcc tgaaagtcga cacacattgc tcctttctct
     1201 gttgctgacc tcattgactc caggttctct ggctaaaacc gtgggacaac tgctggcctg
     1261 gggcccatca acctactaat ccctgagact gtgcccctgg ggcaccctgt gtcagggcct
     1321 gccaccatgc ggctgagctc cctgctggcc gtgctacggc caatgctccc cctcatcctg
     1381 ggactgtctc tgggatgcag cctgagcctc cttcgggttt cctggatcca gggtgaggga
     1441 gaagatccct gtgtagaggc tgtggggaag ccaggagggc cacagaatcc agacttgaaa
     1501 cacgggctgg accaaagcga tgaagacttc aaacctagga ttgtccccta ctacagggac
     1561 cctaacaagc attacaagaa ggtgctcagg actcggtata tacagacaga gctgggctcc
     1621 cgtgagcgct tgctggtggc tgtcctgact tctcgagcca cactatctac cctggccgtc
     1681 gctgttaacc gtacagtggc acatcacttc cctcggttac tctacttcac ggggcagcga
     1741 ggggcccggg ctcctgcggg gatgcaggtg gtgtctcatg gagatgagcg gcctgcctgg
     1801 ctcatgtcag agaccctgcg ccaccttcac acacactttg gggcagacta tgactggttc
     1861 ttcatcatgc aggacgacac atacgtgcag gcccccagac tggcagctct cgctggccat
     1921 cttagcatca accaagacct gtacttgggc cacgcagagg agttcattgg tacaggagag
     1981 caggcccggt actgccacgg gggcttcggc tacctgttgt cacggagtct cctattgcgt
     2041 ttgcggccgc atctggatgg ctgccgaggg gacattctca gtgcccggcc tgatgaatgg
     2101 cttggccgct gcctcatcga cactctgggc atcggctgtg tctcacagca ccaggggcaa
     2161 cagtatcgct ccttcgaact ggccaagaat agggaccctg agaaggaggg gagccctgca
     2221 ttcctgagtg ccttcaccgt tcaccctgtc tccgagggta ccctcatgta ccggctccac
     2281 aaacgcttca gtgccctgga gttggagcgg gcctacaagg agatagaaca actgcaggct
     2341 cagatccgga acctgacagt gctgaccccc gagggggagg cagggctaag ctggcctgtt
     2401 gggctcccag ccccattcat tccacactct cgattcgagg tgttgggctg ggactacttc
     2461 accgagcaac acaccttcgc ctgtgcagac ggggctccca agtgcccgct gcagggggct
     2521 agcagggcag atgtggggga tgccgtggac actgccctgg agcagctcaa tcggcgctat
     2581 cagccccgct tgcgcttcca gaagcagcgg cttctcaacg gctacaggcg ctttgaccct
     2641 gcgaggggca tggagtacac cctggacttg ctgctggaag ccgtgactca acgagggcat
     2701 cgacgctccc tggcccgcag agtgagcctg ctgaggccac tgagcaaagt ggaaatcctg
     2761 cctatgccct atgtcactga ggctacccgg gtgcagctgg tgttgccgat cctggtggcc
     2821 gaagctccgg ctgccctggc ttttcttgaa gcctttgctg ccagtgttct ggagcctcga
     2881 gaacatgcat tgctcaccct gttgttggtc tatgggcccc gggaaggccg cgggggccct
     2941 gacccatttc ttggagtgaa ggctgcagca gctgagttag aacgacggta ccccgggacg
     3001 aggctggcct ggcttgctgt tcgagcggag gccccttccc aggtgcgact catggatgtc
     3061 atctccaaga aacaccccgt ggacacgctt ttcttcctta ccactgtgtg gacaagacct
     3121 gggtcggaag tcctcaaccg ctgccgtatg aatgcaatct cgggctggca ggccttcttt
     3181 ccggtccact ttcaggagtt caaccccgtt ctgtcaccac agagatctcc cccaggtgtc
     3241 cctggggctg gccctgaccc cccatcccct ggtgtggacc cttctcgggg agctccagtc
     3301 gggggcagat ttgaccggca ggcatcagca gagggctgct tctacaacgc tgactacctg
     3361 gcagcccggg cccggctggc tggtgaactg gcaggccagg aagaggagga agccctggag
     3421 gggctggagg tgatggatgt tttcctccgg ttctcagggc tccacctctt tcgagccgta
     3481 gagccagggc tggtacagaa gttctccctg agggactgca gcccccggct cagtgaggaa
     3541 ctgtaccacc gttgtcgcct cagcaacttg gaggggctgg gtgcccgtac ccagctagct
     3601 atggctctgt ttgagcagga gcaggccaac agcacttagc ttctccaccc ctgggtctgc
     3661 catagcccca ggaagggcaa ggcaaggcaa tggacagatg gagggcttgc cgctgtattt
     3721 ttttaaaaat aagaaatgtt attaaaagta tcttctgcca aac
//
