LOCUS       NM_001415061            2533 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus chondrolectin (Chodl), mRNA.
ACCESSION   NM_001415061 NM_001105894 XM_006248003
VERSION     NM_001415061.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2533)
  AUTHORS   Sleigh,J.N., Barreiro-Iglesias,A., Oliver,P.L., Biba,A., Becker,T.,
            Davies,K.E., Becker,C.G. and Talbot,K.
  TITLE     Chondrolectin affects cell survival and neuronal outgrowth in in
            vitro and in vivo models of spinal muscular atrophy
  JOURNAL   Hum Mol Genet 23 (4), 855-869 (2014)
   PUBMED   24067532
REFERENCE   2  (bases 1 to 2533)
  AUTHORS   Uhlen,M., Oksvold,P., Algenas,C., Hamsten,C., Fagerberg,L.,
            Klevebring,D., Lundberg,E., Odeberg,J., Ponten,F., Kondo,T. and
            Sivertsson,A.
  TITLE     Antibody-based protein profiling of the human chromosome 21
  JOURNAL   Mol Cell Proteomics 11 (3), M111.013458 (2012)
   PUBMED   22042635
REFERENCE   3  (bases 1 to 2533)
  AUTHORS   Weng,L., Smits,P., Wauters,J. and Merregaert,J.
  TITLE     Molecular cloning and characterization of human chondrolectin, a
            novel type I transmembrane protein homologous to C-type lectins
  JOURNAL   Genomics 80 (1), 62-70 (2002)
   PUBMED   12079284
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000011.1.
            
            On or before Dec 20, 2022 this sequence version replaced
            NM_001105894.1, XM_006248003.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360176.646525.1,
                                           SRR26360190.2088148.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760386, SAMEA5760475
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-499               JAXUCZ010000011.1  31141115-31141613
            500-809             JAXUCZ010000011.1  31151944-31152253
            810-967             JAXUCZ010000011.1  31152366-31152523
            968-1054            JAXUCZ010000011.1  31156347-31156433
            1055-1157           JAXUCZ010000011.1  31158446-31158548
            1158-2533           JAXUCZ010000011.1  31161967-31163342
FEATURES             Location/Qualifiers
     source          1..2533
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="11"
                     /map="11q11"
     gene            1..2533
                     /gene="Chodl"
                     /note="chondrolectin"
                     /db_xref="GeneID:288289"
                     /db_xref="RGD:1309885"
     exon            1..499
                     /gene="Chodl"
                     /inference="alignment:Splign:2.1.0"
     CDS             421..1242
                     /gene="Chodl"
                     /codon_start=1
                     /product="chondrolectin precursor"
                     /protein_id="NP_001401990.1"
                     /db_xref="GeneID:288289"
                     /db_xref="RGD:1309885"
                     /translation="MIRFASLLLGAALLCAQGAFARRVVSGQKVCFADVKHPCYKMAY
                     FHELSSRVSFQEARLACESEGGVLLSLENEAEQKLIESMLQNLTKPGTGISDGDFWIG
                     LLRSGDGQTSGACPDLYQWSDGSSSQFRNWYTDEPSCGSEKCVVMYHQPTANPGLGGP
                     YLYQWNDDRCNMKHNYICKYEPEIHPTEPVEKPYLTNQPEDTHENVVVTEAGIIPNLI
                     YVIIPTIPLLLLILVAFGTCCFQMLHKSKGRTKTSPNQSTLWISKSTRKESGMEV"
     exon            500..809
                     /gene="Chodl"
                     /inference="alignment:Splign:2.1.0"
     exon            810..967
                     /gene="Chodl"
                     /inference="alignment:Splign:2.1.0"
     exon            968..1054
                     /gene="Chodl"
                     /inference="alignment:Splign:2.1.0"
     exon            1055..1157
                     /gene="Chodl"
                     /inference="alignment:Splign:2.1.0"
     exon            1158..2533
                     /gene="Chodl"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gctgctgctg ctgctgcttc tgcttttgct gctgttggag tccggaccag ggcacgccag
       61 ctctgtccct tagagcagag acctgggaaa gaagggaaag cggctgctta ggtttgcgct
      121 agagctcctg tttaaccttt ccaacagata cagacacagc aacttttaac actgtcccct
      181 gctcccagac acacgcccac tgtgtcctgc actcccaccc agtgctgcac ggggcagcct
      241 ggcagcaggt ccttactgaa ggcgatgctt acggggatcc tatctcctgt tctgggaagg
      301 cgggagtagg acccagcagg aaagcaagga agctgctggt tagagccacc ggcggtggcc
      361 gcgctgcggg aggatctcgc ctttcctcca ctggacacct gctgcagaag tctcgccacg
      421 atgatccgct ttgcttctct attactggga gctgcgctgc tctgcgccca gggagccttt
      481 gcccgaaggg tggtcagcgg tcaaaaggtc tgctttgctg atgtgaaaca tccctgttac
      541 aaaatggcct acttccatga actgtctagc cgggtgagct tccaggaagc acggctcgct
      601 tgtgaaagtg aaggaggtgt cctcctcagt cttgagaatg aagctgagca gaagttaatc
      661 gagagcatgt tgcagaatct gacaaaacct ggaacaggta tttcagatgg tgacttctgg
      721 ataggacttt tgagaagtgg agatggccag acatctggcg cctgcccaga tctctaccag
      781 tggtctgacg gaagcagttc ccagtttcgg aactggtaca ctgatgaacc ttcttgtgga
      841 agtgaaaaat gtgtagtcat gtatcatcaa ccaactgcca atcctggcct aggaggtccc
      901 tacctttacc agtggaatga tgacaggtgc aacatgaagc acaattacat ctgcaagtat
      961 gaaccagaga ttcatccaac agaacccgtc gaaaagccat atcttacaaa ccaacctgaa
     1021 gacacccatg agaatgtggt tgttactgaa gcaggcataa ttcccaatct aatctatgtt
     1081 attataccaa cgattccgct gcttttgctg atactagttg cttttggaac atgctgtttc
     1141 cagatgttgc ataaaagtaa aggaagaaca aaaactagtc cgaaccagtc tacactatgg
     1201 atttcaaaaa gcacgaggaa ggaaagtggc atggaggtat aataatgaac tgatattgct
     1261 ctggaaaata agaatagttt tgtaatcctt gatcagtgta aggaatggca tcattagttt
     1321 ggaatggctt gaaatctcaa aggatctgca agatgaactg taagctcccc cttgaggcaa
     1381 atgtcaaaat aatttttata tgttcacagt ttcacttaca aaatatactg agtgaggcct
     1441 gcttgctctg ctaaaggata cacccaaact tcatgtaaac aaaatggacc acgcagatat
     1501 aatttccatg gaaatatctg gaattacctg tgtcgggagt agttactttg gctttttttt
     1561 aatcttcata aattttgacc tacttcatgt aatataagtt gttattccaa tttacagtgt
     1621 gcagaaacat tttacctttg ctaaagtgtt tgatgaaaat agagtgttct gatatttata
     1681 tttatgggca tttgagtttt acgcacctgc tgttttcatt aaaaactgaa ttcacacaga
     1741 gacaaagaaa tctttccatt gggaaaacat ttcttttgtg gaatagttca tgtcctttct
     1801 gtttctttgc ttttggttca ataaaggtta ggaagtctct tcagaaataa ggaaccattt
     1861 cactgactgt gctatatatc tgctgagaca ctacttagag gcaagaactg tctaacttca
     1921 attgtgcaag acatgtgcct tacaattatt cctaatttaa aattaaacag atttttgtaa
     1981 taaaatatct ttactaatac ttgtatagac accgatgtag ttaaccttgg aaaaaaatgg
     2041 catctgcagt acaaaccaca ggtcttcaca tgttgcctat agaattgcaa atagctccct
     2101 gagtgtcagg aatcaattcg gctcctccct gtcagtcaaa caggatgact actggaaggc
     2161 tttggagtca gtcagttgct gtttggctga gggtttccta actgaattta gcctgtagaa
     2221 tatacaaaat tcaatggttt tcagcagtgt gatgctaagc agaacacact gatattacag
     2281 atttaaaaaa acaagaagaa gaaaaacaaa actacaaatc acatccatta atgggccatg
     2341 gactagaggt cactgacgtt tgcttatctt tgatgagtgt tgtttgtgat tgtgaactgt
     2401 ggcttccttc tgtctgatgg agtttcctca acatgtagtg tttgttcttc tcaagagagt
     2461 tgtaactatt ttgtcttcaa atgtccctgt gttactttta gccaaataaa gagttcttgt
     2521 ttctgaagaa tga
//
