LOCUS       XM_039097215            1566 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus chimerin 3 (Chn3), transcript variant
            X1, mRNA.
ACCESSION   XM_039097215
VERSION     XM_039097215.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051353.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039097215.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1566
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="18"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1566
                     /gene="Chn3"
                     /note="chimerin 3; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 30 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:689153"
                     /db_xref="RGD:1559751"
     CDS             56..1444
                     /gene="Chn3"
                     /codon_start=1
                     /product="N-chimaerin isoform X1"
                     /protein_id="XP_038953143.1"
                     /db_xref="GeneID:689153"
                     /db_xref="RGD:1559751"
                     /translation="MALTLFDTDEYRPPVRKSYLYQLQQEAPHPRRITCTCKVENRPK
                     YYGREFHGMISREETDQLLSVAEGSYLIRESQQQPGMYTLALRFESQTRNFRLYYDGK
                     HFVGDKRFESIHDLVTDGLNTLYIETKTAEYIAKMTINPIYEHIGYTTLHRGPAYKQH
                     MAVLKKTHDKKKATGQNEVSDKRLTSLVRRATLKENEQIPKYEKVHNFKVRMFRGSHW
                     CEYCANFMWGLIAQRVKCADCGLNVHKQCSKMVANDCKPDLKHVKKVYSCDLTTLVKA
                     HITKRPMVVDMCIREIESRGLKSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNVYE
                     DINIITGALKLYFKDLPIPLITYDAYPKFIESVKIMDPDEQLETLHEALRSLPPAHCE
                     TLRYLMAHLKRVTLHEKENLMSAENLGIVFGPTLMRSPELDPMAALTDIRYQRLVVEL
                     LIKNEDIFNLEF"
ORIGIN      
        1 gtgccatctg ccttctgctg cgggagctag gagcgccggg cagcacggct ccaccatggc
       61 cctgaccctg ttcgatacag atgaatatag acctcctgtt cggaaatctt acttatacca
      121 gctgcagcag gaagcccctc accctcgaag gatcacctgc acttgcaagg tagaaaacag
      181 accaaagtat tatggaagag agtttcatgg tatgatctct agagaagaaa ctgaccagct
      241 cctgagtgtg gctgagggga gctacctcat ccgtgagagc cagcagcagc ctggaatgta
      301 cactttggct ttaagatttg aaagtcagac tagaaacttc aggctgtact atgatggaaa
      361 gcactttgtt ggggacaaac gctttgagtc catccacgat ctggtgactg atggcttgaa
      421 tactctctat attgaaacca agacagcaga atacattgcc aagatgacga taaacccaat
      481 ttatgagcac ataggataca caaccttaca cagagggcca gcatacaaac agcacatggc
      541 agtcctgaaa aagacacacg ataagaaaaa ggctacaggc cagaatgagg tgtcagacaa
      601 aaggttgaca tcacttgtta gaagagcaac tctgaaagaa aatgaacaaa ttccaaaata
      661 tgagaaggtt cacaatttca aggttcgtat gttccgaggg tcacactggt gtgaatattg
      721 tgccaacttc atgtggggcc tcattgctca gagagtgaaa tgtgcagatt gtgggttgaa
      781 tgttcacaag cagtgttcca agatggtcgc caatgactgt aagccagacc tgaagcacgt
      841 gaagaaggtg tacagctgtg acctaacaac gctcgtgaaa gctcacatca ccaagcggcc
      901 aatggtggta gacatgtgca tcagggagat tgagtccaga ggtctgaaat ctgaaggact
      961 ctaccgagtg tcgggattta gtgacctaat tgaagacgtc aagatggctt ttgatagaga
     1021 cggtgaaaag gcagatattt ctgtgaacgt gtatgaggac atcaacatta tcactggggc
     1081 acttaaactg tacttcaagg acctgccaat tcccctcatc acctacgatg cctaccccaa
     1141 gttcatagag tccgtcaaaa ttatggaccc tgatgagcaa ttggagaccc ttcatgaagc
     1201 actcagatct ctgccgccgg cccactgcga gacgcttcgg tacctcatgg cacacctcaa
     1261 gagagtgacc cttcacgaga aggagaatct gatgagtgca gagaaccttg ggattgtgtt
     1321 tggtccaacc ctcatgagat caccagagtt agaccccatg gccgccctga ctgacatacg
     1381 ctatcagaga ctggtggtgg agctgcttat caaaaatgaa gacattttta atttagagtt
     1441 ttgacttgag gagaaaagaa atggtttaca gatgaaggaa tgttttctag taatttaatt
     1501 agcttcatta gctgaattgt ttcttgctta gaggtttggc caaataccca gattaaaatg
     1561 aaggaa
//
