LOCUS       XM_039108773            8000 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus cell adhesion molecule L1-like (Chl1),
            transcript variant X1, mRNA.
ACCESSION   XM_039108773
VERSION     XM_039108773.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051339.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039108773.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8000
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..8000
                     /gene="Chl1"
                     /note="cell adhesion molecule L1-like; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 38 ESTs, 3 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     48 samples with support for all annotated introns"
                     /db_xref="GeneID:89828"
                     /db_xref="RGD:620122"
     CDS             596..4270
                     /gene="Chl1"
                     /codon_start=1
                     /product="neural cell adhesion molecule L1-like protein
                     isoform X1"
                     /protein_id="XP_038964701.1"
                     /db_xref="GeneID:89828"
                     /db_xref="RGD:620122"
                     /translation="MELPLGGRGLILSLIFLLLKLSTAEIPLSVHQVPTIVKQSYVQV
                     AFPFDEYFQIECEAKGNPEPKFSWTKDDKPFDLSDPRIIAFNNSGTFRIPNEGHISHF
                     QGKYRCFASNRLGTAISEEIEFIVPGVPKFPKEKIEPIDVEEGDSIVLPCNPPKGHPP
                     LHIYWMNIELEHIEQDERVYMSQKGDLYFANVEEKDSRNDYCCFAAFPKLRTIVQKMP
                     MKLTVNSLKHANDSSSSTEISNQANSIKQRKPKLLLPPAQIGSASSKTVLKGDTLLLE
                     CFAEGLPTPQIEWSKLGSELPKGRATIEIHEKTLKIENVSYQDRGNYRCTANNLLGKA
                     SHDFHVIVEEPPRWKKKPQSAVYSTGSNGILLCEAEGEPQPTIKWRVNGLPIENHPFP
                     GDVMFPREISFTNLQPNHTAVYQCEASNIHGTILANANIDVVDVVPLIQTKNEENYET
                     VVGYSAFLHCEYFASPKATVVWEVADETHPLEGGRYHTHENGTLEIERTTEEDAGSYS
                     CWVDNTMGKAVITANLDIRNATKLRVFPKNPRIPKSHVLELYCESQCDSHLKHSLKLS
                     WSKDGEAFEMNGTEDGRIVIDGANLTISNISGEDQGIYSCSAQTALDSTSGKTQVTVL
                     GVPDPPRNLLLSERQNRSVRLSWEAGDDHNSKISEYIVEFEGNREEPGKWEELTRVRG
                     EETDVVLPLAPYVRYQFRVTAVNEVGKSHSSQPSDHHETPPAAPDKNPHNIRVQASQP
                     KEMIIKWEPLKSMEQNGPGLEYRVSWKPQGAPEEWEEETVTNHTLRVMTPTVYAPYDV
                     QVQAINQLGSGPEPQPVTLYSGEDYPSTAPVIHRVDVMNSTLVKVTWSSIPKETVHGL
                     LRGYQINWWKTKSLLDGRTHPKEVNILRFSGQRNSGMVPSLEPFSEFHLTVLAYNSKG
                     AGPESEPYIFQTPEGVPEQPSFLKVIKVDKDTATLSWGLPKKLNGNLTGYLLQYQIIN
                     DTYELGELNEINVTTPSKSSWHLSNLNATTKYKFYLKACTSRGCGKPISEEGATLGEG
                     SKGIRKITEGVNVTQKSHPVEVLVPGAEHIVHLMTKNWGDNDSIFQDVIETRGREYAG
                     LYDDISTQGWFIGLMCAIALLTLILLTVCFVKRNRGGKYSVKEKEDLHPDPEVQSAKD
                     ETFGEYSDSDEKPLKGSLRSLNRNMQPTESADSLVEYGEGDQSIFNEDGSFIGAYTGA
                     KEKGSVESNGSSTATFPLRA"
ORIGIN      
        1 atgttaaaaa tgacaagcaa agttttctct ttgtcccttg cttttcataa aaccaaagtc
       61 ttgatcgtgt aactgcctct tgtcccaagg gagactgtgt aaaagggagg gaaaagaagc
      121 ggagtgggtg aggggtggca gagcagatcc gggggacagc ggagaagagg cgcgagccag
      181 tctctggcag gagggcgtgg ataccggtgc aagctcgaac aggtccagcc ttctggagac
      241 ctgtgccaac agcaggaggg gacagacggg atctctgtgg gcaaactagg gtgtggacca
      301 gccgggagcg cctaactaga aactcccctg gatcctccca gaggcactgg actcgctggt
      361 ccccttttgc cccactgagc cacctttaga agttttccca agagaaggta ccagacagat
      421 cggatgtcag aggcagctca ggtgtaataa actaactgca gacaatgatt ctaccttgat
      481 aatccaggca gaccacagtg gatcaagcat tactggtttc tcccatttct tcagtgaaca
      541 gaaagtatta gagatcttct tcaatctttg cacattgcct cctttccaag gaacaatgga
      601 attgccatta ggtggaagag gattgatcct gagtctaatt ttcctcctgt taaaattgtc
      661 aacagctgaa ataccactct cagttcacca ggttccaaca atcgtaaagc agtcatatgt
      721 gcaagtggcc tttcccttcg atgagtattt tcaaattgaa tgtgaagcaa aaggaaaccc
      781 tgaaccaaaa ttttcatgga ccaaggatga taagcctttt gatctctctg accctcggat
      841 aattgcattt aacaactcag gcacattcag gatcccaaat gagggccaca tctctcattt
      901 tcaaggaaaa taccgctgtt ttgcatctaa cagactagga actgcaatat cagaagaaat
      961 agagttcata gttccaggtg ttccaaaatt cccaaaagaa aaaattgaac ccattgatgt
     1021 agaagaaggg gattccattg tcctaccctg caaccctccc aaaggccacc cacctttaca
     1081 catctattgg atgaatattg aattagaaca cattgaacaa gatgaacgag tgtacatgag
     1141 ccagaaagga gatctttact ttgcaaatgt ggaagaaaaa gacagtcgga atgattactg
     1201 ctgcttcgct gcatttccaa aattaagaac gattgtacaa aaaatgccaa tgaaactaac
     1261 tgtgaacagt ttaaagcatg ctaatgattc aagttcatcc acagaaatta gtaaccaggc
     1321 aaattccatc aagcaaagga aacccaagct actgttgcct cctgctcaaa ttggcagtgc
     1381 atcctcaaag actgtactca aaggggatac cttgttgctc gagtgttttg cagagggcct
     1441 accaactcca cagatcgagt ggagcaaact gggtagtgaa ttaccaaagg gaagagcaac
     1501 aattgaaatt catgaaaaga cattgaagat agaaaatgtc tcctaccagg acagaggaaa
     1561 ttatcgctgt acagccaaca atttgttggg gaaagccagt cacgattttc acgtcatagt
     1621 agaagagcct ccccgctgga aaaagaagcc tcagagtgcc gtgtacagca cagggagcaa
     1681 cggtatcttg ttgtgtgaag cagaaggaga accccagccc acaatcaaat ggagagtcaa
     1741 tggcttgccg attgaaaatc atccatttcc tggtgacgtt atgttcccca gggaaatcag
     1801 ttttacaaac ttacagccaa atcatactgc tgtatatcag tgcgaagcct caaatattca
     1861 tggaaccatt ttggccaacg ccaatattga tgttgtagat gttgttccac tgatacaaac
     1921 taagaatgaa gaaaactatg aaactgtggt tgggtacagc gctttcttac actgcgagta
     1981 ctttgcttca cccaaggcca cagtggtctg ggaagtggct gatgaaacac atccccttga
     2041 aggtggtcgg tatcatactc atgaaaacgg cacactggag atcgaaagaa ctactgagga
     2101 agatgcaggc tcatactctt gttgggtaga caacacaatg ggaaaggccg tcatcacggc
     2161 gaacttggat attcgaaatg ctacgaagct cagagttttt cctaagaatc ctcgaatccc
     2221 taaatcacat gtgcttgaac tatactgtga aagccagtgt gactcacatt tgaaacacag
     2281 tttgaagttg tcctggagta aagatggaga agcttttgag atgaatggca cagaagatgg
     2341 caggatcgtg attgacgggg ctaatctgac catatctaac atctcaggag aagatcaggg
     2401 tatttactcc tgttctgctc aaactgctct tgatagtact tcgggaaaaa ctcaagtaac
     2461 cgtccttggt gttccagatc ctcccagaaa ccttctcctg tcagaaagac aaaacaggag
     2521 tgtccggctg tcctgggaag caggagatga ccacaacagc aaaatcagcg agtacattgt
     2581 agaatttgaa gggaacagag aggaacctgg aaagtgggag gaactaacta gagtccgagg
     2641 agaagaaaca gatgttgtgc tacctttggc tccgtatgtg agatatcagt ttagggtcac
     2701 agctgtaaac gaagtcggaa aaagtcactc cagccaacca tcagaccatc atgaaactcc
     2761 accagcagct ccagacaaga atccacataa catcagagtt caagcatctc aacccaagga
     2821 aatgattata aaatgggagc ctttgaaatc tatggagcag aacggaccag gactggagta
     2881 cagagtgagc tggaagcccc agggagcccc tgaagagtgg gaagaagaaa cagttacaaa
     2941 ccacacatta cgtgtgatga cacctactgt ctatgctcct tacgatgtcc aagttcaagc
     3001 cattaatcaa ctaggctctg ggcctgagcc ccagccagtg acactctatt caggggaaga
     3061 ctatcctagt acggctcctg tgatccatcg tgtggatgtt atgaacagta cattagttaa
     3121 agttacctgg tcatcaattc ctaaggaaac agtacacgga ctactaagag gataccagat
     3181 aaattggtgg aaaacaaaaa gcctgttgga tggaaggaca catcccaaag aagtgaacat
     3241 tctaaggttt tcaggacagc gaaattctgg aatggttcct tccctagagc cctttagtga
     3301 atttcactta acagtcttag cctataattc caaaggagct ggtccagaga gtgagccgta
     3361 tatatttcag acaccagaag gagtacctga acaaccaagt tttctcaagg tcatcaaagt
     3421 tgataaagac acagccacct tatcctgggg ccttcctaag aaactaaatg gaaatttaac
     3481 tggttatctc ttacaatacc agataataaa tgacacttac gagcttggag agttaaatga
     3541 aatcaacgtt acgactccat ctaaatccag ttggcatctc tccaacctca acgcaacaac
     3601 aaaatacaaa ttctacttga aggcatgcac ctcgagaggc tgtgggaagc cgatcagtga
     3661 ggaaggtgcc acactaggag aggggagtaa aggtatcagg aagataacag aaggagtaaa
     3721 tgttacccaa aagagtcacc ctgtagaggt acttgtgccg ggagcggaac atattgttca
     3781 cctaatgact aagaattggg gtgataacga tagcattttt caagatgtta ttgagacaag
     3841 agggcgagag tatgctggct tatatgatga tatctccact caaggctggt ttattggact
     3901 gatgtgtgca attgctcttc tcacactgat attgttaact gtttgctttg tgaagaggaa
     3961 cagaggtgga aagtattcag taaaagaaaa ggaagattta cacccagatc cagaagttca
     4021 gtcagcaaaa gatgaaactt ttggtgaata cagtgacagt gatgaaaagc ctctcaaggg
     4081 aagccttcgg tccctgaata gaaacatgca gcccacagag agtgctgaca gtttagtgga
     4141 atatggagaa ggagatcagt ccatattcaa cgaagatgga tcatttattg gcgcctacac
     4201 aggagctaag gagaaaggat ctgttgaaag caatggaagt tcaactgcca ccttcccact
     4261 ccgagcataa gcacagcaca tccatgcacc aaggctggct cacctggacc tctccagtct
     4321 cttaagggga gcaaggcctt ttccacagga gtgaaaaatg tgtgtccaga ggttgatatt
     4381 ctgcaatttt gctcagaaaa atagcactgc cttccaaaag aaaaagaaaa aagaatcata
     4441 tgccaagtac ttcaaccctg tgtttcattt tgggttttga tttcaggtgc tcaaaatgca
     4501 aaacacgaaa aaaatcctgt atttagatcc actttgactg aatccaaagt tctcatttct
     4561 gatattccac atctgcctgg ttctcctgtt cagtgtgtgt gcattgatgt tgctaactgc
     4621 gtgggtttct ctctggatgc acaattatac tcagttttga agaactgttt tagtgatgtt
     4681 gattcactac aggttaaaag attgtaagca agcaaaagtt ggttatttaa aatgtaaaaa
     4741 ggaacatgaa tgtcttatta aacattccat ggaatctata gtctaaagtt attatttaaa
     4801 attttagtag caaaagtctt agaggatcat accactcata tttattgagc tcctatttgg
     4861 ccagagactg ctatctttac acagagttat agtgttttca atttctggat aattgttttt
     4921 aatttttgtc agtcatgaca actctgtatc catctttctt tctttcttcc ttccttcctt
     4981 ccttccttcc ttccttcctt ccttccttcc tttcttcttt caactcagac taactggggc
     5041 tgcaaaggga gtggtagtca taggttattt taaaaacagg aagatgttga tgtctctatt
     5101 ttatatcttc atttgtaagt ttagggcttt ctgcctttat gtttatatac cgagatgctt
     5161 gagtgtattt catgaatgca ttgtacatat tatgttaata tttacacagt ttaaaacata
     5221 gtgttttatt ttaaagtgag aaaaagaaca ttaataggca tgattgtaca gctagaatat
     5281 ataatgtaag aatccatttt tatccttctg gggctaggca caataacatg gggttccaaa
     5341 ttcaagacta tatgaaaaat tggattttgt ttttatattt ctctccctca tgtagtctca
     5401 aaataaagta ttgtataatc ataaagggaa attcattcat acttttcaaa ataagttttg
     5461 gttggattct taccccggca ctcgaaaaag aaaataatct acggtagaaa ctcttctttt
     5521 tttttttctt tttttttttt tttggagctg ggaactgaac ctagggcctt gcgcttgcta
     5581 ggcaagcgct ctaccactga gctaaatccc caactagaaa ctcttatata actgttagtt
     5641 tatatcatac tgtaaatgta tttgtagtgg tatgatcatt ctttaaatgt tttccttcta
     5701 tcaaagttag tacagattca gggactttag tttctggcat gagggctacc agtccatcta
     5761 aaatggtaca taaggtttag aacattttag aaatcctatg aaggactctg tatacatcta
     5821 agtaaatact aagtattagt atttgctttc atattaaatg gaaaaatttt gcctcaccat
     5881 gaaattacta actctgttaa gaaatactgg ttcacagatt taactttagt ttgtataatt
     5941 attggccata ctgttcattc ttcatattta attggtacga tgcattatgt tgtttgggga
     6001 ttaaaatcgt gaacatataa aagagccaat aaataggaaa catacttttt aaccacatgc
     6061 atcctgcaga atgcataggc aggaaaagct tgtttttgtt tttaactttt tgttaatttt
     6121 tgttaacttt tggttgattt gggttttgtt ttttcaaaac ccatggatct cagtattcag
     6181 ttaccctctt ggaagtacca aacggaagcc tgcgtgagtg taaggaccca gatgtccagt
     6241 tatacaaaca gatctccaac cctttctgat gactaggacc gagatttctg gaagatccat
     6301 cattgtgtgc tatttttatg ggaggacctg tagtgctgag ccccagagaa aataaaggat
     6361 gcagctgaca gtaactatgc tattattctg cctcctcttt gtcatcaaaa ccagttttga
     6421 aaggatcatc taagttgaaa ataataccca aaagttccca atggattcat taggaattta
     6481 ataatctttg agtcagaagt tgacagaaat tattatattt ttgtttcaaa tggatctcat
     6541 cattctttct tcagccattg gaatgtaaga ttggctttta acactttttg ctagcctctg
     6601 taaaccttta aatactactt ggtttcactc tgttgtaact cttcagcaaa gcaggccaag
     6661 gtccgtggac ttttaaaatt ttaactgtag aattacagca ttcagtatgt tcgaatgaaa
     6721 accaatccaa ttggttaaag tggattttat tctttttctg tctcggagac catgggtggc
     6781 agactccatg acgtgcaatg ctgattacaa atgggcaata attgtttaga agttgcccac
     6841 tgagtcatca ggcagctgct agtatgtaaa actctgttct taactggttt cacagtaaca
     6901 ttctatagtc tactgacgat atgattttaa tgtgattgta tataatctga aggattgcca
     6961 atggggataa cttcagatgg agatgtttga gggtcaggaa aatccatgtt ctcttccagg
     7021 ttccagcata tattatgtac agaaacctta ggcatgatgc tgaactgctt catttcaaac
     7081 cgtgctacaa agtgctaatg attgctatca cagggtgttc ttttgtatga agaaaaattt
     7141 acaagtgata aaatctaaga tgccttttaa cctcattacc caacctgtaa tcaaattatg
     7201 tatcaaaaag tcacccccac atacgccaac tcaacttttt ccccctctaa gcacataaat
     7261 atatttttat aaaaaaaaca cagatctaca gaaaataaac gaaatctgct cttaagagag
     7321 gagtacaatt tgcacatgcc attgaaaatt attaatcaga agaaaatcaa gcagggtctt
     7381 tgctatacaa aagtgttttc cactaattct gcatgcgtat ttgtaagacg tgaactcagt
     7441 ggatttattc tcttggtata aaggcatctg atattttaga tgtacccatg tttataaaaa
     7501 gaaaatttag agcacaatga acttatgcta ttttatactc atggaagaga tagaggacaa
     7561 taggggagat gtcggctgct tttctaagta tttaaaacat atttgccaat tgaaacccta
     7621 aatatgttta catgccatga aggcgtaact cttgtaacaa ctttaaattg gttatagtag
     7681 gactggtttg tggtctgtgg taatagatgt accctagtgt tcctatagag tgtgataagt
     7741 agtgttgagc caaagcttac tttgttttgt atcttaaact gactgcatcg tcaaaaagac
     7801 aaaaggtatg gggagcaggt tcacccaagt agtctttttc gttttcactg agattaatgt
     7861 tcacagtaga tctttattga aatgtgtttg tgtcgtagat ggtgtttgta ttatgcttat
     7921 ggctatgtat ggttcaaaac tattttcatt acacatggaa ttcagctttc aaataaaagt
     7981 ttgagttcgt gtactgtgaa
//
