LOCUS       XM_039078577            1252 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus choline kinase beta (Chkb), transcript
            variant X6, mRNA.
ACCESSION   XM_039078577
VERSION     XM_039078577.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051342.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1252
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1252
                     /gene="Chkb"
                     /gene_synonym="Chetk; Chkl"
                     /note="choline kinase beta; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 30
                     ESTs, 4 long SRA reads, 1 Protein, and 96% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     230 samples with support for all annotated introns"
                     /db_xref="GeneID:29367"
                     /db_xref="RGD:61826"
     CDS             210..1022
                     /gene="Chkb"
                     /gene_synonym="Chetk; Chkl"
                     /codon_start=1
                     /product="choline/ethanolamine kinase isoform X5"
                     /protein_id="XP_038934505.1"
                     /db_xref="GeneID:29367"
                     /db_xref="RGD:61826"
                     /translation="MECFQRAAWNSTSHPLTTLKGYWVQSRPLKTQELRDPVLSGAIA
                     TKMARFHGMEMPFTKEPRWLFGTMERYLKQIQDLPSTSLPQMNLVEMYSLKDEMNHLR
                     TLLDATPSPVVFCHNDIQEGNILLLSEPDSDDNLMLVDFEYSSYNYRGFDIGNHFCEW
                     VYDYTYEEWPFYKARPADYPTREQQLLFIRHYLAEVQKGEVLSEEEQKKQEEDLLIEI
                     SRYALASHFFWGLWSTLQASMSTIEFGYLEYAQSRFQFYFQQKGQLTSFLSP"
ORIGIN      
        1 ggaggagctg agcgtttgcc ccgtgagcgg aggcctcagc aacctgctct tccgatgctc
       61 gctaccgaac cacgtgccca gtatgggcgg ggagccccgg gaggtgctgc tacggctgta
      121 cggggctatc ttgcagggtg tagactcctt ggtattagaa agcgtgatgt tcgccattct
      181 tgcagagaga tctctagggc cccaacttta tggagtgttt ccagagggcc gcttggaaca
      241 gtacctccca ccccctcacc accctgaaag gttactgggt acagagccgg ccattgaaaa
      301 ctcaagagct ccgggaccca gtgttgtcag gagccattgc aacaaagatg gcccgtttcc
      361 atggtatgga gatgcccttc accaaggagc cccgctggtt gtttgggacc atggagcggt
      421 acctaaagca gatccaggac ctgccgtcca ctagccttcc ccagatgaac ctggtggaga
      481 tgtacagcct caaggatgag atgaatcacc tcaggacgtt gctagacgct acaccgtccc
      541 cagtggtctt ctgccacaat gacatccagg aaggaaacat cttactgctc tcagagccag
      601 acagtgatga caacctcatg ttggttgatt tcgagtacag tagttacaac tacaggggct
      661 ttgacattgg gaatcatttc tgtgagtggg tttacgatta cacttacgag gagtggcctt
      721 tctacaaagc aagacctgca gactacccca ctagagaaca gcagctcctt ttcatccgtc
      781 attatctggc ggaggttcag aaaggtgagg tcctctccga agaggagcag aagaaacagg
      841 aagaagattt gctgatagag atcagccggt atgccctggc ctctcatttc ttctggggcc
      901 tatggtccac cctccaggct tccatgtcca ctatagagtt tggctacttg gaatacgccc
      961 aatctcggtt ccagttctac ttccagcaga aggggcagct gaccagcttc ctatcacctt
     1021 gaggatccaa cccccacctc agatttctcc tggagcctcc ggggcaggcc ctcggaggga
     1081 ggggcaaaga gcagaagccc ccagagcttg ggctgtgcct ctaagtgaga ctgtcgttga
     1141 agtagctgac ctccgtactc ctttcttagt acttgcccaa ggggggcatc tgacagcccc
     1201 tggggctgtg cacctaaata aatgaacttc acaaatacaa ctgaggaata ca
//
