LOCUS       XM_039103104            2222 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus choline kinase alpha (Chka),
            transcript variant X5, mRNA.
ACCESSION   XM_039103104
VERSION     XM_039103104.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039103104.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2222
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2222
                     /gene="Chka"
                     /gene_synonym="Chk; CK-R"
                     /note="choline kinase alpha; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 26
                     ESTs, 1 long SRA read, 1 Protein, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     48 samples with support for all annotated introns"
                     /db_xref="GeneID:29194"
                     /db_xref="RGD:61944"
     CDS             211..1257
                     /gene="Chka"
                     /gene_synonym="Chk; CK-R"
                     /codon_start=1
                     /product="choline kinase alpha isoform X4"
                     /protein_id="XP_038959032.1"
                     /db_xref="GeneID:29194"
                     /db_xref="RGD:61944"
                     /translation="MARGPVIKRDPNKLRMKMNFNFHCRRRRGDCSQPTGERTTAEDR
                     HLEGLRLSSPESLCSIGLQGAEAMVLESVMFAILAERSLGPKLYGIFPQGRLEQFIPS
                     RRLDTEELCLPDISAEIAEKMATFHGMKMPFNKEPKWLFGTMEKYLNQVLRLKFSREA
                     RVQQLHKFLSYNLPLELENLRSLLQYTRSPVVFCHNDCQEGNILLLEGQENSEKQKLM
                     LIDFEYSSYNYRGFDIGNHFCEWMYDYTYEKYPFFRANIQKYPTRKQQLHFISSYLTT
                     FQNDFESLSSEEQSATKEDMLLEVNRFALASHFLWGLWSIVQAKISSIEFGYMEYAQA
                     RFDAYFDQKRKLGV"
ORIGIN      
        1 acatcagtgt catcaggggt ggtctcagta acatgctgtt ccagtgttcc ttgccagact
       61 ccatagccag tgttggtgat gaacctcgga aagtgctctt gcgactgtat ggggcaatct
      121 taaagatggc ttgtccatgc gatcgtgcct ggagcactct ggtttccagg tgacagacac
      181 gattcacggt gtttttgata aagctgtgga atggcaagag gtcctgtaat aaagagggat
      241 ccgaacaagc tcagaatgaa aatgaatttc aatttccact gtaggaggcg ccgaggagac
      301 tgctcccagc ctacagggga gaggactaca gcagaggaca gacaccttga gggccttcgc
      361 ttgagctccc ctgagagtct ctgcagtatc ggtcttcagg gggctgaagc aatggttctg
      421 gagagtgtta tgtttgccat tcttgcagag aggtcacttg ggccaaaact ctatggcatc
      481 tttccgcaag gccgactgga gcagtttatc ccgagccggc gattggacac tgaagaatta
      541 tgtttaccag atatttctgc agaaatagct gaaaaaatgg ccacatttca tggtatgaaa
      601 atgccattca ataaggaacc aaaatggctt tttggaacaa tggaaaaata cctgaatcaa
      661 gtactaagac ttaaattcag cagggaggcc agagttcaac aactgcacaa gttcctctct
      721 tacaatctgc ctctcgagct tgagaacctg aggtcattgc tgcagtatac tagatcccca
      781 gttgtgtttt gtcataatga ctgtcaagaa ggtaatatct tattgttgga aggccaagag
      841 aattctgaaa agcagaagtt gatgctcatt gactttgaat acagcagtta caattacagg
      901 ggatttgaca ttggaaatca tttctgtgaa tggatgtatg attataccta tgaaaagtat
      961 cctttcttca gagcaaacat tcagaagtat cctacccgaa aacaacagct ccattttatt
     1021 tcaagttact tgactacatt ccaaaatgat tttgaaagcc tcagcagtga agagcagtct
     1081 gctacaaaag aagacatgtt gcttgaagtc aacagatttg cccttgcctc tcatttcctc
     1141 tggggacttt ggtccattgt acaggccaag atctcatcca ttgaatttgg gtacatggaa
     1201 tatgcccaag ccaggttcga tgcctacttt gaccagaaga ggaagcttgg tgtgtgaatg
     1261 gatggctcca ctcttcacca ctggactgca ggaggtggct gcaccaggcc ctcagtggag
     1321 cgctgctgtg accactgccc tgggcagaag gcctggacgt ctcactactg agcaccgatg
     1381 tgtatgatac tacagactat attaaagtgg agtaacattt ctttcatctt tgtttacact
     1441 ctcactagga ctctgaacca tgattggaag cagaaatata gtgtgatagt gcaatagctc
     1501 agaccccgcc taagcgggag gcctttcagc tacatggcta cagcttcagc cacttaggcc
     1561 ccagccagac agagcagtgc tgtgtgggta ctgagtgctg acttaggata ttaatgtgct
     1621 gcaacacgtt catgaccagg ctttgaaggt gacagtctga caatgtgttg gagacactct
     1681 gaagggcaag tgaacagaca tactgtgaaa tggctcgaca ggaggagcct gaattgtggg
     1741 gtctgtggag gcagccagct gtttctgtac agggtacact tgactatggg tatgcatctg
     1801 caggcagtag ctgcagccct cctgtgcctg tgtacacatg actacagggg ccagtgtcac
     1861 tgactggcca taactgcagt gtctcctaac tgggtgtgct ttatgcttca gcttcccggg
     1921 gaggagcagt ggagccagct tcctcacccc ttcttgcctt ctctctgcct gacctggaac
     1981 ttgggctttc gcccattgcc ctctgaagct gcttcccatc tgatgtcact gggagacagc
     2041 agctgtatgt gtggggtatt ggggtgcagg tagattagag ctgtgaaatc catgtacatt
     2101 aatacccaat gggataaacc tagaattttt tttttttact ctgaactctg aattgttttg
     2161 tgcacatatt tctgctacca ccgaaactgt attatacaga taaataaaca acttgaaact
     2221 ta
//
