LOCUS       XM_039090436            1736 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus chitinase 1 (Chit1), transcript
            variant X2, mRNA.
ACCESSION   XM_039090436
VERSION     XM_039090436.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051348.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039090436.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1736
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="13"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1736
                     /gene="Chit1"
                     /note="chitinase 1; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 4 ESTs, 5 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 55 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:289032"
                     /db_xref="RGD:1305646"
     CDS             163..1527
                     /gene="Chit1"
                     /codon_start=1
                     /product="chitotriosidase-1 isoform X2"
                     /protein_id="XP_038946364.1"
                     /db_xref="GeneID:289032"
                     /db_xref="RGD:1305646"
                     /translation="MVQSLALAGSAAKLFCYFTNWAQYRSGAARFLPRDVDPNLCTHV
                     IYAFAGLNNHQVSTVEPNDELFYQELNSLKKRNPKLKTLLAVGGWSFGTQKFTDMVAT
                     ASTRQTFVNSALSFLRTHGFDGLDLDWEYPGSRGSPAVDKERFTALIQDLAKAFQEEA
                     RASGKSRLLLTAAVPTGRGHVDAGYEVDKIVQSLDFINLMAYDFHSSWDKTTGHNSPL
                     YKRQGETGKDAEKNVDAAVTLWLQKGTPASKLMLGMPAYGRSFTLASSSDSGVGAPAT
                     GPGAPGPYTKEKGILVYFEVCSWKGKQRIEDQKVPYVSQGNQWVGFDDRESFRAKAAY
                     VKQKGLGGAMVWILDGDDFKGSFCNEGQYPLIRTLHQELSLSSGPPRSPEQEVPGPHQ
                     PSEPEQGPSPGLDDFCQGKADGLYPNPTEKSSFYSCGGGRLFQHSCPPGLVFIDSCKC
                     CTWG"
ORIGIN      
        1 atttcgctac ccgcagctct cctccctctc tctctctctt tctcctccct caggtatcca
       61 tttcaacatt tctggctgtg tggcagcagg ccagcctgag gagagcagag caggacctgt
      121 ggagccgctc ctcacagagc tctatctgct ggaggcaggg tcatggtgca gtccctggcc
      181 ttggcaggct ctgctgcaaa actgttctgc tacttcacca actgggccca gtaccggtcc
      241 ggggcagctc gattcctacc tagggatgtg gatcccaacc tgtgtaccca tgtcatctat
      301 gcctttgctg gactgaacaa ccaccaggtc agcactgtag agcccaatga cgagcttttc
      361 taccaagagc tgaacagcct aaagaagagg aaccccaagc tcaagaccct gttagccgtc
      421 gggggctgga gctttggtac ccagaagttc acagacatgg tggccacagc cagcacccgg
      481 cagacctttg tcaactcagc tctctcgttc ctgcgcactc atggttttga cggccttgac
      541 cttgactggg aatacccagg aagccgaggg agcccagcag tagacaaaga gagattcaca
      601 gcgctgatac aggatttggc caaagccttc caggaggaag cccgggcctc agggaaaagt
      661 cgcctccttc tgactgcagc tgtaccaact ggtcgaggcc atgtggatgc tggttatgag
      721 gtggacaaga ttgttcagag tttggatttc atcaacctta tggcctacga cttccacagc
      781 tcctgggaca agaccacagg gcacaacagc cccctctaca aaaggcaagg agagactggg
      841 aaagatgctg aaaaaaatgt ggatgctgct gtgacgctct ggctgcagaa ggggacccct
      901 gccagcaaac tgatgcttgg catgcccgcc tacggacgct ccttcacctt ggcctcctca
      961 tcagacagtg gagttggggc tccagccaca ggacctgggg ccccaggccc ctatactaag
     1021 gaaaagggga tactggttta ctttgaggtc tgctcctgga agggaaaaca gagaatcgag
     1081 gaccagaagg tgccctatgt ctcccagggc aaccaatggg tgggatttga tgacagggaa
     1141 agcttcagag ccaaggctgc ctatgtgaaa cagaagggac tgggaggggc catggtctgg
     1201 attctggatg gggatgactt caaaggttcc ttctgcaacg agggccagta ccctctcatc
     1261 cggacactac accaggagct gagcctttca tccgggcctc caagaagccc agaacaggaa
     1321 gtacctgggc cacaccagcc ttctgagccc gagcagggcc ccagcccagg gctagatgac
     1381 ttctgccaag gcaaagctga tgggctctac cccaacccta cagaaaagtc cagtttctac
     1441 agctgtggag gggggcgact gttccagcac agctgccccc caggcctggt gtttatcgac
     1501 tcttgcaaat gctgtacctg gggttgagtc cctggagtcc catcagactc cagtctgagg
     1561 ccaggcttgg gacgccccgc cccctgccag tagcttgctt ctgctttccc tggggggctg
     1621 caggaggcct ctctgttctt tccctgactc ggcctctgct cagctttttg gcttcctttt
     1681 tgtctcttct aggctcccgc tttacctgaa aaaataaact tatttttcac ccccga
//
