LOCUS       XM_039090435            1763 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus chitinase 1 (Chit1), transcript
            variant X1, mRNA.
ACCESSION   XM_039090435
VERSION     XM_039090435.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051348.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1763
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="13"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1763
                     /gene="Chit1"
                     /note="chitinase 1; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 2 mRNAs, 4 ESTs, 16
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 72 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:289032"
                     /db_xref="RGD:1305646"
     CDS             160..1554
                     /gene="Chit1"
                     /codon_start=1
                     /product="chitotriosidase-1 isoform X1"
                     /protein_id="XP_038946363.1"
                     /db_xref="GeneID:289032"
                     /db_xref="RGD:1305646"
                     /translation="MVQSLALAGVTTLLMIQWGSAAKLFCYFTNWAQYRSGAARFLPR
                     DVDPNLCTHVIYAFAGLNNHQVSTVEPNDELFYQELNSLKKRNPKLKTLLAVGGWSFG
                     TQKFTDMVATASTRQTFVNSALSFLRTHGFDGLDLDWEYPGSRGSPAVDKERFTALIQ
                     DLAKAFQEEARASGKSRLLLTAAVPTGRGHVDAGYEVDKIVQSLDFINLMAYDFHSSW
                     DKTTGHNSPLYKRQGETGKDAEKNVDAAVTLWLQKGTPASKLMLGMPAYGRSFTLASS
                     SDSGVGAPATGPGAPGPYTKEKGILVYFEVCSWKGKQRIEDQKVPYVSQGNQWVGFDD
                     RESFRAKAAYVKQKGLGGAMVWILDGDDFKGSFCNEGQYPLIRTLHQELSLSSGPPRS
                     PEQEVPGPHQPSEPEQGPSPGLDDFCQGKADGLYPNPTEKSSFYSCGGGRLFQHSCPP
                     GLVFIDSCKCCTWG"
ORIGIN      
        1 tcgctacccg cagctctcct ccctctctct ctctctttct cctccctcag gtatccattt
       61 caacatttct ggctgtgtgg cagcaggcca gcctgaggag agcagagcag gacctgtgga
      121 gccgctcctc acagagctct atctgctgga ggcagggtca tggtgcagtc cctggccttg
      181 gcaggtgtga cgactctgct gatgatccag tggggctctg ctgcaaaact gttctgctac
      241 ttcaccaact gggcccagta ccggtccggg gcagctcgat tcctacctag ggatgtggat
      301 cccaacctgt gtacccatgt catctatgcc tttgctggac tgaacaacca ccaggtcagc
      361 actgtagagc ccaatgacga gcttttctac caagagctga acagcctaaa gaagaggaac
      421 cccaagctca agaccctgtt agccgtcggg ggctggagct ttggtaccca gaagttcaca
      481 gacatggtgg ccacagccag cacccggcag acctttgtca actcagctct ctcgttcctg
      541 cgcactcatg gttttgacgg ccttgacctt gactgggaat acccaggaag ccgagggagc
      601 ccagcagtag acaaagagag attcacagcg ctgatacagg atttggccaa agccttccag
      661 gaggaagccc gggcctcagg gaaaagtcgc ctccttctga ctgcagctgt accaactggt
      721 cgaggccatg tggatgctgg ttatgaggtg gacaagattg ttcagagttt ggatttcatc
      781 aaccttatgg cctacgactt ccacagctcc tgggacaaga ccacagggca caacagcccc
      841 ctctacaaaa ggcaaggaga gactgggaaa gatgctgaaa aaaatgtgga tgctgctgtg
      901 acgctctggc tgcagaaggg gacccctgcc agcaaactga tgcttggcat gcccgcctac
      961 ggacgctcct tcaccttggc ctcctcatca gacagtggag ttggggctcc agccacagga
     1021 cctggggccc caggccccta tactaaggaa aaggggatac tggtttactt tgaggtctgc
     1081 tcctggaagg gaaaacagag aatcgaggac cagaaggtgc cctatgtctc ccagggcaac
     1141 caatgggtgg gatttgatga cagggaaagc ttcagagcca aggctgccta tgtgaaacag
     1201 aagggactgg gaggggccat ggtctggatt ctggatgggg atgacttcaa aggttccttc
     1261 tgcaacgagg gccagtaccc tctcatccgg acactacacc aggagctgag cctttcatcc
     1321 gggcctccaa gaagcccaga acaggaagta cctgggccac accagccttc tgagcccgag
     1381 cagggcccca gcccagggct agatgacttc tgccaaggca aagctgatgg gctctacccc
     1441 aaccctacag aaaagtccag tttctacagc tgtggagggg ggcgactgtt ccagcacagc
     1501 tgccccccag gcctggtgtt tatcgactct tgcaaatgct gtacctgggg ttgagtccct
     1561 ggagtcccat cagactccag tctgaggcca ggcttgggac gccccgcccc ctgccagtag
     1621 cttgcttctg ctttccctgg ggggctgcag gaggcctctc tgttctttcc ctgactcggc
     1681 ctctgctcag ctttttggct tcctttttgt ctcttctagg ctcccgcttt acctgaaaaa
     1741 ataaacttat ttttcacccc cga
//
