LOCUS       NM_001412550            1513 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus chitinase 3-like 3 (Chi3l3), mRNA.
ACCESSION   NM_001412550 XM_008761383
VERSION     NM_001412550.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1513)
  AUTHORS   Hussain,M. and Wilson,J.B.
  TITLE     New paralogues and revised time line in the expansion of the
            vertebrate GH18 family
  JOURNAL   J Mol Evol 76 (4), 240-260 (2013)
   PUBMED   23558346
REFERENCE   2  (bases 1 to 1513)
  AUTHORS   Ilnitskaya,E.V., Radchenko,V.V., Kosyreva,A.M., Shuvaeva,T.M. and
            Lipkin,V.M.
  TITLE     Cloning and analysis of a cDNA sequence encoding new rat
            chitinase-like protein
  JOURNAL   Dokl Biochem Biophys 439, 199-201 (2011)
   PUBMED   21928145
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000002.1.
            
            On Oct 5, 2022 this sequence version replaced XM_008761383.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: JF781276.1, SRR22582424.179918.1
                                           [ECO:0000332]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-40                JAXUCZ010000002.1  196496456-196496495
            41-70               JAXUCZ010000002.1  196500779-196500808
            71-272              JAXUCZ010000002.1  196501328-196501529
            273-329             JAXUCZ010000002.1  196504411-196504467
            330-495             JAXUCZ010000002.1  196505096-196505261
            496-620             JAXUCZ010000002.1  196509068-196509192
            621-744             JAXUCZ010000002.1  196510925-196511048
            745-930             JAXUCZ010000002.1  196511279-196511464
            931-1050            JAXUCZ010000002.1  196512228-196512347
            1051-1192           JAXUCZ010000002.1  196512429-196512570
            1193-1513           JAXUCZ010000002.1  196513514-196513834
FEATURES             Location/Qualifiers
     source          1..1513
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q34"
     gene            1..1513
                     /gene="Chi3l3"
                     /gene_synonym="Chil3; rYM1olf"
                     /note="chitinase 3-like 3"
                     /db_xref="GeneID:295351"
                     /db_xref="RGD:1308790"
     exon            1..40
                     /gene="Chi3l3"
                     /gene_synonym="Chil3; rYM1olf"
                     /inference="alignment:Splign:2.1.0"
     CDS             16..1221
                     /gene="Chi3l3"
                     /gene_synonym="Chil3; rYM1olf"
                     /note="chitinase-like protein"
                     /codon_start=1
                     /product="chitinase 3-like 3 precursor"
                     /protein_id="NP_001399479.1"
                     /db_xref="GeneID:295351"
                     /db_xref="RGD:1308790"
                     /translation="MAKLILATGLAILLYAHLGSSYQLMCYYTSWAKDRPTVGSFKIG
                     NIDPCLCTHLIYAFAGMRNNEIINTSEQDLIDYEAINYLKDRNTELKTLLAIGGWKFG
                     SAPFSAMVSTPQNRQTFIKSVIKFLRQYKFDGLNLDWQYPGSRGSPPKDKHLFSVLVQ
                     EMRKAFEKESTEQEIPRLLLTATVAGVIDTIQSGYKIPELSQSLDYFQVMTYNLHDFQ
                     NGYTRENSPLYQSPSDTGIYAYLNVDAIISYWKDNGAAREKLIVGFPAYGHNFILSDP
                     SNTGINAPIVSTGPPGKFTGEAGLWAYYEICTFLNDGATDLWDGPQEVPYAVQGNVWV
                     GYDNVKSFKIKAQWLKDNKLGGAMVWPLDMDDFTGSFCQQGRFPLTSTLKHYLGVQST
                     NCMAYKEEL"
     exon            41..70
                     /gene="Chi3l3"
                     /gene_synonym="Chil3; rYM1olf"
                     /inference="alignment:Splign:2.1.0"
     exon            71..272
                     /gene="Chi3l3"
                     /gene_synonym="Chil3; rYM1olf"
                     /inference="alignment:Splign:2.1.0"
     exon            273..329
                     /gene="Chi3l3"
                     /gene_synonym="Chil3; rYM1olf"
                     /inference="alignment:Splign:2.1.0"
     exon            330..495
                     /gene="Chi3l3"
                     /gene_synonym="Chil3; rYM1olf"
                     /inference="alignment:Splign:2.1.0"
     exon            496..620
                     /gene="Chi3l3"
                     /gene_synonym="Chil3; rYM1olf"
                     /inference="alignment:Splign:2.1.0"
     exon            621..744
                     /gene="Chi3l3"
                     /gene_synonym="Chil3; rYM1olf"
                     /inference="alignment:Splign:2.1.0"
     exon            745..930
                     /gene="Chi3l3"
                     /gene_synonym="Chil3; rYM1olf"
                     /inference="alignment:Splign:2.1.0"
     exon            931..1050
                     /gene="Chi3l3"
                     /gene_synonym="Chil3; rYM1olf"
                     /inference="alignment:Splign:2.1.0"
     exon            1051..1192
                     /gene="Chi3l3"
                     /gene_synonym="Chil3; rYM1olf"
                     /inference="alignment:Splign:2.1.0"
     exon            1193..1513
                     /gene="Chi3l3"
                     /gene_synonym="Chil3; rYM1olf"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aatcctgagg acaccatggc caagctcatt cttgccacag gtctagcaat tcttctgtat
       61 gcacacctgg gatcttccta tcagctgatg tgctactata ccagttgggc taaggacaga
      121 ccaacagtag ggagtttcaa aattggtaat attgaccctt gtctgtgtac ccacttgatc
      181 tatgcctttg ctgggatgcg gaataatgag attatcaaca caagtgagca ggacttgatt
      241 gactatgaag caataaatta tctgaaagac aggaacactg agctaaaaac tctcctggcc
      301 attggaggct ggaagtttgg atctgccccg ttcagtgcca tggtctctac tcctcagaac
      361 cggcagacat tcatcaaatc agtcatcaaa ttccttcgcc agtataagtt tgatggcctc
      421 aacttggact ggcaataccc tgggtctcgt ggaagccctc ctaaggacaa acatctcttc
      481 agtgtcctgg tgcaggaaat gcgtaaagcg tttgagaaag aatctactga gcaagaaatc
      541 ccaaggctgc ttctcactgc cacagtagct ggagtcattg acacaatcca gtctggttac
      601 aagattcctg aactctctca gtcacttgac tattttcaag tcatgacata taatctccat
      661 gatttccaga atggttacac tagagaaaat agtcccctct atcaatctcc atccgacact
      721 ggaatatatg cctatctcaa tgtggatgca atcataagct actggaagga taatggggca
      781 gctcgtgaga agctcattgt gggatttcca gcatatgggc ataactttat cctgagtgac
      841 ccctctaaca ctggaattaa tgcccctatt gtcagtactg gcccaccagg gaagttcaca
      901 ggtgaagcag gactctgggc ttactatgag atttgcacat ttctgaatga tggagccact
      961 gatctctggg atggccccca ggaagtaccc tatgccgttc agggcaatgt atgggttggt
     1021 tatgataatg tcaagagctt caagattaag gctcagtggc tcaaggacaa caaattagga
     1081 ggtgcaatgg tctggcccct ggacatggat gacttcactg gttctttctg tcaacaggga
     1141 aggttccctt tgacttctac tttaaagcat tatctaggtg tacagagtac aaattgtatg
     1201 gcttataaag aggagcttta actggtaatt tgtccttgaa cctatcagat taagagcaaa
     1261 ttcaaacagc ttttccatag tggattctgt atcacccttc gaaggagaat aatagcaata
     1321 aatcctgggc ttgcctgaat tgaatcccag agcagtacta ctaaaatgga tgtcttgtct
     1381 gctgtaccag ctaagaagaa accaagaatg gccttcatct gtctgctttt tgctaatctc
     1441 tgaacattgc ttgcttcctg caaaactacc ttgcatgttt ctggctttca taataaattc
     1501 aacattcaaa ata
//
