LOCUS       XM_008761350            4404 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus chromodomain helicase DNA binding
            protein 1-like (Chd1l), transcript variant X2, mRNA.
ACCESSION   XM_008761350
VERSION     XM_008761350.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_008761350.4.
            
            On Jan 21, 2021 this sequence version replaced XM_008761350.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4404
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4404
                     /gene="Chd1l"
                     /note="chromodomain helicase DNA binding protein 1-like;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 28 ESTs, 9 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 76 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:310707"
                     /db_xref="RGD:1311935"
     CDS             5..2785
                     /gene="Chd1l"
                     /codon_start=1
                     /product="chromodomain-helicase-DNA-binding protein 1-like
                     isoform X1"
                     /protein_id="XP_008759572.1"
                     /db_xref="GeneID:310707"
                     /db_xref="RGD:1311935"
                     /translation="MLLRRVNARELCPLAAARGSEGAGPWAEPFGMAGGSPRFLQALR
                     AGDRPEPVRTRVQEQDLQEWGLTGIRLRSYQLEGVNWLVQCFHGQNGCILGDEMGLGK
                     TCQTIALLIYLVGRLNDEGPFLILCPLSVLSNWKEEMERFAPGLSCVTYTGDKEERAR
                     RQQDLRQESGFHVLLTTYEICLKDASFLKSFSWSVLAVDEAHRLKNQSSLLHRTLSEF
                     SVVFRLLLTGTPIQNSLQELYSLLSVVEPDLFCREQVEDFVQCYQDIEKESKSASELH
                     RLLRPFLLRRVKAQVATELPKKTEVVIYHGMSALQKKYYKAILMKDLDAFENETAKKV
                     KLQNVLTQLRKCVDHPYLFDGVEPEPFEVGEHLIEASGKLHLLDRLLAFLYSGGHRVL
                     LFSQMTHMLDILQDYMDYRGYSYERVDGSVRGEERHLAIKNFGKQPIFVFLLSTRAGG
                     VGMNLTAADTVIFVDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVYRKA
                     ASKLQLTNMVIEGGHFTLGAQKPAAEADLQLSEILKFGLDKLLSSEGSSMDEIDLKSI
                     LGETKDGQWTPDALPAAAEGESREQEEGKNHMYLFEGRDYSKEPSKEDRKSFEQLVNL
                     QKTLLEKTSHGGRSLRNKGSVLIPGLAEGPIKRKKILSPEELEDRQKKRQEAAAKRKK
                     LMEEKKKAKEEAEHRKKMAWWESNGYQSFCLPSEDSELEDLEDLEDGDETSAELDYED
                     LDLTSINYVSGDVTHPQAGEEDAVIVHCVDDSGRWGRGGLFTALEARSAEPRKIYELA
                     GKMKDLSLGDVLLFPIDDKESRDKGQDLLALVVAQHRDRTNVLSGIKMAALEEGLKKI
                     LLAAKKKKASVHLPRIGHATKGFNWYGTERLIRKHLATRGIPTFIYYFPRSKAAACHS
                     QPASPTSAPLVP"
ORIGIN      
        1 cttcatgctt ctgcggcgtg tgaatgcgcg cgaactgtgc cctctggcgg cggcgcgcgg
       61 gagcgaaggc gcggggccgt gggcggagcc tttcgggatg gcgggtggct cgccgcgctt
      121 cttgcaggcg ctgcgggccg gggaccgacc cgagccagtg cggacgcggg tgcaggaaca
      181 ggacttacag gagtggggct tgactgggat tcgtctacgc tcttaccaac tggagggagt
      241 caactggcta gtccagtgct tccatggcca gaatggctgc atcctgggag acgagatggg
      301 cctggggaag acctgccaga ccatcgctct cctcatttac ttggtgggga gactgaacga
      361 cgaagggccg tttctgatcc tttgtccctt gtctgttttg agcaactgga aagaagagat
      421 ggagagattt gctccaggtc tttcctgtgt gacatacaca ggtgacaagg aagagagagc
      481 ccgccgtcag caggacctaa gacaggagtc gggttttcat gtgctgctga cgacctatga
      541 gatttgcctg aaagatgcct catttctaaa atccttctct tggagtgtcc ttgctgtgga
      601 tgaagctcac agattgaaaa accagagctc cctgctgcat aggacacttt cagagttctc
      661 agtggttttc cgtctcctgc tcaccggaac tcccatccag aacagcctcc aggagctcta
      721 ctctcttctc agcgtcgtgg agcctgatct cttctgcaga gagcaggtgg aagatttcgt
      781 tcagtgttac caggacattg agaaagagtc caaatcagcc agtgagctgc acagactcct
      841 gcggcctttc ctcctgaggc gagtgaaagc tcaggtggcc acagagcttc ccaagaagac
      901 agaggtggtg atataccatg gcatgtcagc actgcagaaa aagtactaca aggccatctt
      961 gatgaaagac ctagatgcat ttgagaacga gacggcaaag aaagtcaaac tccagaatgt
     1021 cctaacgcag cttcggaagt gtgtggacca cccatatctg tttgatggtg tggaaccaga
     1081 gccctttgaa gttggagagc acctgattga ggccagtggg aaacttcacc tgctggacag
     1141 gctgctggca tttctgtact ctgggggcca ccgggtttta ctcttctccc agatgaccca
     1201 catgttggat attctgcaag actatatgga ttacagaggg tacagctatg agcgtgtgga
     1261 tggctccgtg agaggagagg agagacacct ggccattaag aactttggaa aacagcccat
     1321 ctttgttttc ctcctgagca cccgggcagg cggagtgggc atgaacttaa cagcagcaga
     1381 taccgttatt tttgtcgaca gtgattttaa tcctcagaat gacttgcagg cggctgcccg
     1441 agctcaccgg atcggccaga acaagtctgt taaagtcatc cggctcatcg gccgagacac
     1501 cgtggaagaa attgtgtata ggaaggcggc ctccaaactg cagcttacca acatggtcat
     1561 agaaggaggc catttcaccc taggagccca gaaacctgca gctgaggccg acttacagtt
     1621 aagtgagata ctcaaattcg gcttggataa gctgctgtcc tctgagggga gctccatgga
     1681 tgaaatagac ctgaagtcca tcctgggaga aaccaaagat ggccagtgga cccctgatgc
     1741 tctgcccgca gcagcagaag gagaaagcag agaacaagag gaaggaaaaa accacatgta
     1801 cttatttgaa ggcagagact attctaagga gcccagtaag gaagacagga agtcgtttga
     1861 acagctggtg aatcttcaga aaactcttct agagaagacg agtcatgggg gccggtccct
     1921 ccggaataaa ggcagtgttc ttatcccagg ccttgcagaa gggcccatca aaaggaagaa
     1981 gattctaagt ccagaagagc tggaggacag acagaagaaa agacaggaag cagcagccaa
     2041 gagaaagaag ctaatggagg agaagaagaa ggctaaggag gaggctgaac acaggaagaa
     2101 gatggcctgg tgggaatcca acggttatca gtccttctgc ctgccctcag aggacagcga
     2161 gcttgaggac ctcgaggacc tcgaggatgg agacgagact tctgccgagc tagattatga
     2221 agatctagac ttgacctcca ttaactatgt tagcggtgac gtcacccacc cccaggctgg
     2281 cgaagaggac gctgtcattg tgcactgtgt cgatgactct ggccgctggg gcagaggtgg
     2341 cttattcaca gctctggaag cacggtccgc tgaaccaaga aaaatatatg agctggctgg
     2401 gaaaatgaaa gatctgagtt tgggcgatgt ccttttattt cccatcgatg ataaagagtc
     2461 acgagacaag gggcaagacc tgttggcctt ggtggtggct cagcaccgcg atcgtaccaa
     2521 tgtcctgtct ggcattaaga tggcagccct agaagagggc ctgaagaaga tacttttagc
     2581 agcaaagaag aagaaagcaa gtgttcatct tccacgaatt ggacatgcta caaagggttt
     2641 taactggtat ggtactgaaa gacttattcg gaaacacttg gctacccgag gcatcccaac
     2701 tttcatatac tactttccca gaagtaaggc tgctgcctgc cattcacagc ctgcatcccc
     2761 cacctcagca ccactggttc cttagcaacc agcccagcat cagactggtg cacggaaggg
     2821 agagctgagt gaagacaggg tggggagaag ctacttcagc caactcatgc cttcaaagtg
     2881 aacaccagag cagaggctgg cgacagactc gccagccttc cgcaccagca ggactccctg
     2941 cccttcttga ctcagtattg ggatcctgaa gacaggtggt tggcctggag acctgccaag
     3001 tgtgacttta ggaaaccctg agtatccttt cctccacttg caaagccagt gtagtttcag
     3061 tatgccgctc ctggctggca cagcgtgacc tgtgagcatc cctggaacag agaaccactg
     3121 gaagagcagt cttggaggcc aggccatgta agcagtggtt cgccacacct gtgtgagcct
     3181 tggctttcga cagctgtctt cgagctgaga gtggactcac acgagatgcc cgtagtgcat
     3241 gggtgaagaa agtgcagcct attacaggag tacggcacta ctcagccata gggaagaatg
     3301 aagtcgtatc attttcagca gagtggaggg aactggagat tactgtagga agtaagcaga
     3361 acacaagaag acactgttct ctgtcgggac cgaggctgca gaactccaag ctgtaagtgg
     3421 aataatcatt acagacagga tatatgcggc tgaattgatc agcgagccct gtgttcacgg
     3481 tcataaaagc acaccaggcc cgcttaacgt ccgctaacac atgctgcagt aaaaataagt
     3541 accatgttaa tcccacggat ttgaggagga agaccaccaa cccaaattat gtcccaatca
     3601 aatcagccct gggccagttt cccaaacctc cttcataggg cagatctgca gggtcggggg
     3661 ttttgtaagc aagcaccttc cgcacagatc ccccaggagg tgggtttaca gataaactgc
     3721 caggtcaaag tagctcagat tccaggaatc agaaacttac attttacagt aaagagaaac
     3781 ctaactgagc tagcatatca aaatgtctcc tgattacaaa acagagacag actggttcct
     3841 catatgcctt acaggtatct aatgggcata ttggtgtatt aattagttcc ttaggaacca
     3901 aagactttga gaaagatctt tccttactcc ttttccacat catatgaaac aatttggggc
     3961 acacaaatgt cacttgaaat ggtatgtaaa ttgctagcct ccagtatgag agaagcatta
     4021 agcctctgcc atcactgata aattggaaat ggagtgtata cataagcata aaacctgaaa
     4081 acagagaagc ttgccatttt ttgtgatccc ctgactagca atagccactt aaaacttctc
     4141 cctatgtttc actaacatat cagtggcatt caagtacaga ttcatagtca cgctaaacat
     4201 agctggctag ccaacccaat ggaagtcaca gtgggaaacc gtgctagtta caggtacagc
     4261 ttggctgaaa tctcattcca ggaagaaaag gctggctaaa gctaaggaaa gtaagctgcc
     4321 atccctctgt ctttaaaggt ctatacatat aagttgtctt tcccattaaa actttttaat
     4381 tgcaaaatta aaaaagttaa tttc
//
