LOCUS       NM_001106509             540 bp    mRNA    linear   ROD 19-SEP-2024
DEFINITION  Rattus norvegicus coiled-coil-helix-coiled-coil-helix domain
            containing 5 (Chchd5), transcript variant 2, mRNA.
ACCESSION   NM_001106509 XM_001078868 XM_215828
VERSION     NM_001106509.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 540)
  AUTHORS   Morgenstern,M., Peikert,C.D., Lubbert,P., Suppanz,I., Klemm,C.,
            Alka,O., Steiert,C., Naumenko,N., Schendzielorz,A., Melchionda,L.,
            Muhlhauser,W.W.D., Knapp,B., Busch,J.D., Stiller,S.B.,
            Dannenmaier,S., Lindau,C., Licheva,M., Eickhorst,C., Galbusera,R.,
            Zerbes,R.M., Ryan,M.T., Kraft,C., Kozjak-Pavlovic,V., Drepper,F.,
            Dennerlein,S., Oeljeklaus,S., Pfanner,N., Wiedemann,N. and
            Warscheid,B.
  TITLE     Quantitative high-confidence human mitochondrial proteome and its
            dynamics in cellular context
  JOURNAL   Cell Metab 33 (12), 2464-2483 (2021)
   PUBMED   34800366
REFERENCE   2  (bases 1 to 540)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   3  (bases 1 to 540)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473949.1.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_215828.3, XM_001078868.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMD00132261,
                              SAMD00132262 [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..540
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q36"
     gene            1..540
                     /gene="Chchd5"
                     /note="coiled-coil-helix-coiled-coil-helix domain
                     containing 5"
                     /db_xref="GeneID:296147"
                     /db_xref="RGD:1307809"
     exon            1..142
                     /gene="Chchd5"
                     /inference="alignment:Splign:2.1.0"
     CDS             141..512
                     /gene="Chchd5"
                     /note="isoform 2 is encoded by transcript variant 2;
                     coiled-coil-helix-coiled-coil-helix domain-containing
                     protein 5"
                     /codon_start=1
                     /product="coiled-coil-helix-coiled-coil-helix
                     domain-containing protein 5 isoform 2"
                     /protein_id="NP_001099979.1"
                     /db_xref="GeneID:296147"
                     /db_xref="RGD:1307809"
                     /translation="MQAALEVTARYCSRELDQYGQCVAAKPESWHRDCHYLKMSIARC
                     TSSHPIIRQIRQACAVPFEAFEECLRLNEAAVGNCAEHMRRFLQCAEQVQPPSSPTTG
                     EVKEAHSIMPFPLHNSLRFLI"
     exon            143..283
                     /gene="Chchd5"
                     /inference="alignment:Splign:2.1.0"
     exon            284..540
                     /gene="Chchd5"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tatgtgggtt gaatggcggg aactctcggc gaccggaaga gtaagccagg aggtctggct
       61 tgggcgccgc catgacaacc taataccgga aaaggcaggt ctcttctccc tgactgatcg
      121 gcgcctgaat tcgcctggag atgcaggcgg ccctggaagt cactgctcga tactgcagcc
      181 gggagctgga tcagtatggc caatgtgtgg cagccaagcc agagtcgtgg catcgagatt
      241 gtcactacct taagatgagc atcgctcgct gcacgtcttc ccaccccatc atccggcaga
      301 tccgacaggc ctgtgctgtg ccgtttgaag cctttgagga gtgtcttcgc ttgaatgagg
      361 cagcagttgg caactgtgct gaacacatgc ggcgcttcct gcagtgcgct gagcaggtgc
      421 agccaccaag ttcacccacg actggagagg taaaggaggc tcactcgatc atgccttttc
      481 cccttcataa ctcccttcgt tttctaattt aaacactttc aagaactagc cacagcccca
//
