LOCUS       NM_001399018             831 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus coiled-coil-helix-coiled-coil-helix domain
            containing 2 (Chchd2), mRNA.
ACCESSION   NM_001399018 XM_039090095
VERSION     NM_001399018.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 831)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 831)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000012.1.
            
            On Dec 29, 2021 this sequence version replaced XM_039090095.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BI282305.1, BQ211132.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            gene product(s) localized to mito. :: inferred from homology
            RefSeq Select criteria             :: based on single
                                                  protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-241               JAXUCZ010000012.1  32464847-32465087
            242-494             JAXUCZ010000012.1  32467496-32467748
            495-645             JAXUCZ010000012.1  32468975-32469125
            646-831             JAXUCZ010000012.1  32470686-32470871
FEATURES             Location/Qualifiers
     source          1..831
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /map="12q13"
     gene            1..831
                     /gene="Chchd2"
                     /gene_synonym="Chchd2l1"
                     /note="coiled-coil-helix-coiled-coil-helix domain
                     containing 2"
                     /db_xref="GeneID:100910788"
                     /db_xref="RGD:6496638"
     exon            1..241
                     /gene="Chchd2"
                     /gene_synonym="Chchd2l1"
                     /inference="alignment:Splign:2.1.0"
     CDS             192..656
                     /gene="Chchd2"
                     /gene_synonym="Chchd2l1"
                     /EC_number="2.3.1.15"
                     /note="coiled-coil-helix-coiled-coil-helix
                     domain-containing protein 2-like;
                     coiled-coil-helix-coiled-coil-helix domain-containing
                     protein 2, mitochondrial-like;
                     coiled-coil-helix-coiled-coil-helix domain containing
                     protein 2-like 1"
                     /codon_start=1
                     /product="coiled-coil-helix-coiled-coil-helix
                     domain-containing protein 2"
                     /protein_id="NP_001385947.1"
                     /db_xref="GeneID:100910788"
                     /db_xref="RGD:6496638"
                     /translation="MPRGSRSRTSRVTPPASRAPQMRAAPRRAPAAQPPATAAAPSAV
                     GSPAAAPRQPGLMAQMATTAAGVAVGSAVGHTLGHAITGGFSGGANAEPARPDITYQE
                     PQGAPLQNQQSFGPCSLEIKQFLECAQNQSDVKLCEGFNEVLRQCRIANGLI"
     exon            242..494
                     /gene="Chchd2"
                     /gene_synonym="Chchd2l1"
                     /inference="alignment:Splign:2.1.0"
     exon            495..645
                     /gene="Chchd2"
                     /gene_synonym="Chchd2l1"
                     /inference="alignment:Splign:2.1.0"
     exon            646..831
                     /gene="Chchd2"
                     /gene_synonym="Chchd2l1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gccaaggcct tgccagttac tgatgtcttc ttcttccaat aaccttgagg ggccgtcttc
       61 ttctgggttc tgattggcta cccggtgagg taccgcctcc agtcttcctc tctccttggt
      121 agaaagtgct ggacgctttt gggagtttcg cagtttgtgg tctctgaaag ctgagagtac
      181 aagcagttag gatgccgcgt ggaagccgaa gccgcacttc ccgggtgact cctccggcca
      241 gccgggcccc tcagatgagg gctgctccca gaagagcacc agcagctcag cctccagcca
      301 cagctgccgc cccatctgca gtcggctcac ctgctgctgc ccctcggcag ccaggcctga
      361 tggcccagat ggctaccact gcagccggtg tggctgtggg ttctgcggtg gggcacaccc
      421 tgggtcacgc catcactggg ggcttcagcg gaggggctaa tgctgagcct gcgaggcctg
      481 acatcactta ccaggagcct cagggagccc cgctgcagaa ccagcagtct tttggacctt
      541 gctctctaga gatcaagcag tttctggagt gtgctcagaa ccagagcgat gtcaagctct
      601 gtgagggctt caatgaggtg ctgcggcagt gcaggattgc aaatggttta atctaatcaa
      661 gaaattcaag ctggagaaat gtaaacttgg ttctgtataa ttgatagtca cacgtgtgga
      721 tccttattgg catttactga ggcttgtagt gttggttact gggcaagtgt ttggcttcct
      781 tgaactaact gtattgtgat tgagttaaat aaagtgtgtt attctcaagt g
//
