LOCUS       NM_001107329            3996 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus chromosome alignment maintaining phosphoprotein 1
            (Champ1), transcript variant 1, mRNA.
ACCESSION   NM_001107329 XM_001065858 XM_001065919 XM_225063
VERSION     NM_001107329.2
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3996)
  AUTHORS   Itoh,G., Kanno,S., Uchida,K.S., Chiba,S., Sugino,S., Watanabe,K.,
            Mizuno,K., Yasui,A., Hirota,T. and Tanaka,K.
  TITLE     CAMP (C13orf8, ZNF828) is a novel regulator of
            kinetochore-microtubule attachment
  JOURNAL   EMBO J 30 (1), 130-144 (2011)
   PUBMED   21063390
REFERENCE   2  (bases 1 to 3996)
  AUTHORS   Park,E., Liu,E., Shek,M., Park,A. and Baker,A.J.
  TITLE     Heavy neurofilament accumulation and alpha-spectrin degradation
            accompany cerebellar white matter functional deficits following
            forebrain fluid percussion injury
  JOURNAL   Exp Neurol 204 (1), 49-57 (2007)
   PUBMED   17070521
  REMARK    GeneRIF: Electrophysiological consequences of cerebellar white
            matter injury and temporal profile of NF200 and spectrin
            degradation following forebrain fluid percussion injury.
REFERENCE   3  (bases 1 to 3996)
  AUTHORS   Shaw,G., Yang,C., Ellis,R., Anderson,K., Parker Mickle,J.,
            Scheff,S., Pike,B., Anderson,D.K. and Howland,D.R.
  TITLE     Hyperphosphorylated neurofilament NF-H is a serum biomarker of
            axonal injury
  JOURNAL   Biochem Biophys Res Commun 336 (4), 1268-1277 (2005)
   PUBMED   16176808
  REMARK    GeneRIF: Serum levels of pNF-H immunoreactivity may be used to
            conveniently monitor neuronal damage and degeneration in
            experimental and presumably clinical situations.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000016.1.
            
            On Mar 28, 2023 this sequence version replaced NM_001107329.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC168662.1, SRR26643287.33067.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-108               JAXUCZ010000016.1  82447037-82447144   c
            109-3996            JAXUCZ010000016.1  82436172-82440059   c
FEATURES             Location/Qualifiers
     source          1..3996
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /map="16q12.5"
     gene            1..3996
                     /gene="Champ1"
                     /gene_synonym="RGD1311283; Zfp828"
                     /note="chromosome alignment maintaining phosphoprotein 1"
                     /db_xref="GeneID:306647"
                     /db_xref="RGD:1311283"
     exon            1..108
                     /gene="Champ1"
                     /gene_synonym="RGD1311283; Zfp828"
                     /inference="alignment:Splign:2.1.0"
     exon            109..3996
                     /gene="Champ1"
                     /gene_synonym="RGD1311283; Zfp828"
                     /inference="alignment:Splign:2.1.0"
     CDS             153..2558
                     /gene="Champ1"
                     /gene_synonym="RGD1311283; Zfp828"
                     /note="zinc finger protein 828"
                     /codon_start=1
                     /product="chromosome alignment-maintaining phosphoprotein
                     1"
                     /protein_id="NP_001100799.1"
                     /db_xref="GeneID:306647"
                     /db_xref="RGD:1311283"
                     /translation="MEVCQELRKPAISLECGHCSFRGTDYENVQIHMGTIHPEFCDDM
                     DAGGLGKLIFYQKSAKLFHCHKCFFTSKMYSNVYHHITAKHAASDKWSEPPKEQLSKE
                     TESGKSPSLPEQQNTAFDPAEVRPAPTLPIETQKTSPSLSPESQASVPPVLEPQSSAP
                     VISPEPQAPCLPAEASKTAPVSSPECLDPPCELPELEKPEPVPSPESVKSALVSCKPQ
                     RHSPFADTGAPPSALSPESPVLATSPEPWGSSLTASPESRKPVRTASPEPRKPSPSES
                     PELWKPFPAVTSEPRRPTPAVSPGSWKPGPPGSPRPWKSSPSAASGAWKSSKPAPPMS
                     PGPWKPIPSVSPGPWKPAPSMSTASWKSSVSSGSWKTPPTSPESWKSGPPELRKTALP
                     LSPEHWKAVPPVSPELRRPGPPLSPEIRSPAGSPELRKPSGSPDLWKLSPEQRKTSPA
                     SLDFPEPQKSSCGSSPDLWKSSFIMDSQKPNIFSETRKHAASGSSESPKVASDIWKPV
                     LSIDAEPRKSTLFPEPTKAVLPASPEPRKRALFPESRKHVLLPELPKSAVFSEAQKAT
                     ELSEEAQLEAVGDAKCESLVQEGLLATPKRLLDDALFPSTKKLKKDSQESSDAELSSS
                     EFRADLDPLDMKGQESSSDQEQVDVESIDFSKENKMEMGSAEQAKNVLQFTEEKEAFI
                     SEEEIAKYMKRGKGKYFCKICCCRAMKKGAVLHHLVNKHNVHSPYKCTICGKAFLLES
                     LLKNHVAAHGQSLLKCPRCNFESNFPRGFKKHLTHCQSRHSEEANKKLVEALESPLEE
                     PQM"
ORIGIN      
        1 acttcccggc tagtcctgcg tccagccgcc attcccgagg ccgtgcggcc agcccagcgt
       61 ttcctgtggg cgtatcctcc tcttcactcc aggacacctt gccggaggca gtatcgaagt
      121 ctttcaagca cagtcctgcg gtgtgacaga agatggaggt gtgtcaggag cttcggaaac
      181 cagcgataag cttggagtgt ggccactgca gtttcagagg cactgattac gagaatgtgc
      241 agattcacat gggcaccatc caccctgagt tctgtgatga tatggatgcc gggggactgg
      301 gcaagctgat cttctaccag aagagtgcaa agctcttcca ctgccataag tgtttcttca
      361 ccagcaagat gtactccaat gtgtaccatc acatcacagc caagcacgca gcctccgaca
      421 agtggagtga gccgccaaaa gagcagctga gcaaagagac agagtctggg aaaagccctt
      481 cccttcccga gcaacagaac acagcctttg acccagcaga agtgaggccc gctccaaccc
      541 tccccataga aacacagaaa actagtccga gtttgtctcc agagtcccaa gcgtctgttc
      601 ctccggttct ggagcctcag agctctgctc ctgttatttc tcccgagcca caagctcctt
      661 gtcttcctgc tgaggcctca aaaactgctc ctgtttcttc ccctgagtgt ctagacccac
      721 cctgtgagct tcctgagctg gagaagcctg agccagtccc ttctcctgag tcagtgaagt
      781 ctgctcttgt cagctgcaaa ccccaaagac actctccctt tgcagataca ggggctcccc
      841 cttcagcctt gtctccagag tcaccagttc tggccacttc ccctgaacct tgggggtcat
      901 ccctcactgc atctccagag tctcggaagc cagtgaggac tgcctcacct gagccaagaa
      961 agccatcccc ttcagagtct cctgaacttt ggaagccatt tcctgccgtc acttcagagc
     1021 cacggagacc aaccccagca gtgtcaccag ggtcctggaa gccaggacca cctggctctc
     1081 ctagaccttg gaagtccagc ccttcagcag catcaggagc gtggaagtca tcgaagcctg
     1141 ccccacctat gtctcctgga ccctggaagc caataccttc tgtatctcct gggccttgga
     1201 aacctgctcc atcgatgtcc acagcatcct ggaaatcttc agtctcatct ggttcctgga
     1261 aaacaccacc cacatctccg gagtcttgga agtctggtcc acctgaactc cgaaagacag
     1321 cccttccctt gtcgcctgag cattggaagg cagtgccccc tgtgtctcct gagcttcgca
     1381 gaccaggccc gccactttcc ccagagatcc gaagtccagc aggttctcca gagctcagga
     1441 agccttcagg atcaccagac ctgtggaagc tttctcctga gcagcggaaa acttctcctg
     1501 cttcactcga tttccctgag ccccagaaaa gttcttgtgg tagttctcct gatctctgga
     1561 agtcttcctt cattatggac tctcagaagc ctaacatctt ctctgagacg aggaaacatg
     1621 ctgcttctgg ctcgtctgag tcaccgaagg tagcctcaga catatggaag cctgtcctgt
     1681 ctatcgatgc tgagcctagg aagtccacac tgtttcctga gcccaccaaa gcagtccttc
     1741 ctgcttctcc cgagccacgg aaacgagcac ttttcccaga gtcccggaag catgtacttt
     1801 tacctgagct ccccaaatcc gctgtgttct cagaggccca gaaggccact gagctcagtg
     1861 aggaagcaca acttgaagct gtgggtgatg caaagtgtga gagtctggtc caggaggggc
     1921 ttctggccac acccaagaga ctgttagacg atgccctatt tccttctaca aagaagctca
     1981 agaaggacag ccaggagagc tcggatgctg agctcagcag cagtgaattc agagcagatt
     2041 tagacccctt ggacatgaag ggccaggagt ccagcagtga tcaggaacag gtggatgtgg
     2101 aatctatcga ttttagcaaa gagaacaaaa tggagatggg tagtgcagag caggccaaaa
     2161 atgtgcttca gttcacggag gagaaggaag ccttcatctc tgaagaggag attgcaaagt
     2221 acatgaaacg tggaaaaggg aaatatttct gcaaaatctg ttgttgtcgg gctatgaaga
     2281 aaggcgctgt cctgcaccac ttggttaata agcacaatgt ccacagccca tacaagtgca
     2341 caatttgtgg gaaagcattt cttttggagt ctctccttaa aaatcatgta gcagcccatg
     2401 ggcagagctt acttaaatgt ccacgctgta attttgaatc caatttccca agaggcttta
     2461 agaaacattt aacccactgt cagagccggc acagtgaaga ggcaaataag aagctggtgg
     2521 aagctcttga atcgccattg gaggagccac agatgtgatt ttcaaacact gaccccgccc
     2581 tccagtgttg cttgccaaac tcttaggtgt tgagtagcct aaacggatcg gtagtcggag
     2641 tgtgtgtagt gtgtgtcctg tttgtctgag tagtgttaca gagagtaagt acttggttat
     2701 tttttcatat gatctcttgt ttatgtgact ggctatttta taagtcaata catttctgtt
     2761 atagattaca gatggatata actcattttc tttaagctta ttttagtcat aatacaagga
     2821 gtaggggaaa gtaggcaagc catttagtaa acgagcaaat ttaaacccaa tcagaggctt
     2881 tctcctccac tgcgggcgtg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tgtgtgtctg
     2941 tctgtctgtc tgtctgtctg tgtgtctgtc tgtgtgtgtg tgcatgtgtg actgatttca
     3001 gagcatagga attattacat gaggctcagt gcagagcctc tcccagcatg tctcgcatac
     3061 taaccgttcc agggttctat ccctagtact taaaaaaaaa aacaaaaaaa caaaaacggg
     3121 atgtgtgaga actgagcatg aagagtaaat ttgaggaaaa tgttgttaaa tgtacttttg
     3181 aaccatgtct tattttttca tgtaaaatag tttataaatc tttaatattt tcttgatgtt
     3241 cattaatgtt tgttacagag cagcggttct caaccttggg gtggaaagac gctttcacag
     3301 aaagcacaga tatttacatt atgatgatag caaattattt ataaagcagc agtgaaaata
     3361 atgttgtggt tggggtcacc gctgtatgaa gaacacattg aagggtcacg gcattaggaa
     3421 gggtgagagt gctgctgaag agagttggaa ccttatggtt gctggttttc tgctggtagg
     3481 acagcctcgt gagcttttaa agcagttttg gtattttctg caggctgaga aggccacgtg
     3541 attaaggaca ccacttccct ctagttcctt ccagtgaagt cttccttgtg gggcttgccc
     3601 ttcactgccc tgccagctcc catcagcaga tgatctttaa ttgccaaatg tgctagtgtt
     3661 tgtacctcct aggctgggcc ttgtggactt tgtgttgggg ctcgagaccc gagtagtgag
     3721 tgggagctga aagtcttccg gattcgcatg ggacgttgac gagcagtgcg gtctggcagc
     3781 actgctcacc gactccgact cggccactgg ggagctgggt tggagagggt tcacttgggc
     3841 cccgcctggg cagcacagtg acatcctgcc tcaaaaagca ttcctgtctg aaaacagttt
     3901 gattttgttt cacatgtttt gccattgtaa ataccttgta tctctaacat attttgttaa
     3961 atgtgtaccg accaaattaa aacggctttc acgtta
//
