LOCUS       XM_343671               3400 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus chromatin assembly factor 1 subunit A
            (Chaf1a), mRNA.
ACCESSION   XM_343671
VERSION     XM_343671.8
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051344.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jan 18, 2024 this sequence was replaced by
            NM_001427323.1.
            
            On Jan 21, 2021 this sequence version replaced XM_343671.7.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3400
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3400
                     /gene="Chaf1a"
                     /note="chromatin assembly factor 1 subunit A; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 37 ESTs, 3 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     207 samples with support for all annotated introns"
                     /db_xref="GeneID:363333"
                     /db_xref="RGD:1590865"
     CDS             174..2897
                     /gene="Chaf1a"
                     /codon_start=1
                     /product="chromatin assembly factor 1 subunit A"
                     /protein_id="XP_343672.2"
                     /db_xref="GeneID:363333"
                     /db_xref="RGD:1590865"
                     /translation="MLEEPEAATRRAAAMDCKDRPGFPVKRLIQARLPFKRLNLVPKE
                     KVEEDTSPKAAVEGKVPDLQLSLGTFESQCHTGSHIGLSTKLVSGQGPIDSFLRATIK
                     PVPSMVIIDLTESSSDVPDSPQGHSELSPDTASVVTTVEGAAKQQAHSATELCLLETP
                     SDITCHVEEEHGSPGGPKRMGDCQTGSVQSCPKLTPGSRTCPTKELSNWSKAGDLLFI
                     EKVPMVVLEDILATKSSNASLPMMSLDRSVTSESEMLESCPEDDSILSHSSISSSSPT
                     SSPEGLSVPPAHRGGSSPPPTPICRVDKNLVKGSTEKGKSKLHRDKEQQREEKEKLRE
                     EIRRAKEEARRKKEEEKELKEKERREKREKDEKEKAEKQRLKEERRKERQEALEAKLE
                     EKRRKEEEKRLREEEKRIKAEKAEITRFFQKPKTPQAPKTLAGSCGKFAPFEIKEHMV
                     LAPRCRATLDQDLCDQLDRLLHQQNVASSFLSDLKGRLPLRSGPTQVCGHDTDIMNRD
                     VVIVESSKVDGVPERKKFGRMKLLQFSENHRPAYWGTWNKKTAVIRPRNPWVQDKKLL
                     DYEVDSDDEWEEEEPGESLSHSEGDEDDDVGEDEDEDDGFFVPHGYLSEDEGVTEECA
                     DPENHKVRQKLKAKEWDELLAKSKRFRVLQPVQVGCVWAAEAANCTGSDLKLLQQFTA
                     CLLDVTSPDEPEPRASRREKRDQHILAQLLPLLHGNVNGSKVIIREFQEQCRRGLLSL
                     PSPTPHLQVPNSEDAVTVPSKARLKRLISENSAYEKRPDFRMCWYVHPQVLRSFGQEC
                     LPVPCQWTYVTTMPSAPREDSVSIEGPGQSTPMPLKRKPAATMCITQFMKKRRYDGQV
                     GSGDMDGFQADTEEDEEDDTDCMIIDVPDVGSNMSEAPIPAPTLCKRQVSS"
ORIGIN      
        1 ggcttaactg tcacgtgatg caatctcatc caatgggcgc gcgggccgcg gtgattgccg
       61 cggttcccgc caaatacgag cgcggcggcc gcggcggcag cagaagcgac accgtcggga
      121 ggcggagtgt gcagctgggc cgtctgactg aagcctgagc cgccgccgcc gggatgctgg
      181 aggagccgga ggccgcgacg cggagagccg ccgccatgga ttgcaaagac agacctgggt
      241 tcccagtgaa gaggttgata caagcccgct tgcccttcaa acgcctgaac cttgttccca
      301 aggagaaagt tgaggaagac acatcaccaa aagcagctgt ggaaggcaaa gtcccggatc
      361 tacaattgtc tttgggcact tttgaaagcc agtgtcacac aggctctcat ataggcttga
      421 gtacgaagct ggtcagtggc cagggtccca ttgatagctt cttgagggca acgatcaagc
      481 cagtaccgag tatggtcatt atcgacctga ctgagagctc cagtgacgtt ccagacagcc
      541 ctcagggcca cagtgaacta agtcctgaca ctgccagtgt ggtcaccaca gtggaaggag
      601 ctgccaagca gcaggcgcac tctgcaacag agctgtgtct cctagagacc ccttcagaca
      661 ttacttgcca cgtggaagag gagcatggga gcccaggagg tccaaagagg atgggtgact
      721 gtcagactgg ttcagtacag agctgtccta agctgacccc aggttctagg acatgcccca
      781 caaaggagtt atcaaactgg agcaaggcag gggatctcct gtttatagag aaagtgccta
      841 tggtggtgct ggaggacatc ctggccacta aatcttccaa tgcctctctt cccatgatgt
      901 ccttggatag gagtgtcact tcagagagtg aaatgctgga gtcctgcccc gaggatgact
      961 ccatactgag ccactcctcc atcagctcct cttctccaac cagctctcct gaaggactat
     1021 ctgtaccccc agcacatcga ggtgggagca gtcctccccc cacacccatc tgcagagttg
     1081 acaagaatct tgtcaaaggc tccacagaga agggcaagag caaactacac agagataagg
     1141 aacagcagag ggaggagaag gagaagctga gggaagagat ccgacgagcc aaggaggagg
     1201 cacggaggaa gaaggaggag gagaaggagc tgaaggagaa ggagcggagg gaaaagcgtg
     1261 agaaagatga gaaagagaag gcggagaagc agcggctcaa ggaggaaaga cgaaaggagc
     1321 gacaggaagc tctggaggct aaactggaag agaagaggag gaaagaggag gagaagcgat
     1381 tacgggaaga agaaaagcgc attaaggcag agaaggcaga gatcaccagg ttctttcaga
     1441 aaccgaagac tccgcaggct cccaagaccc tggctggctc ctgtggtaag tttgccccct
     1501 ttgaaatcaa agaacacatg gtgttggctc cacggtgccg ggctaccttg gatcaagatc
     1561 tgtgcgatca gctggaccgg ctcctacacc agcagaacgt ggcaagctcc ttcctcagtg
     1621 acctaaaggg ccgactgccc ctgagatctg ggcccaccca ggtctgtggc catgacacag
     1681 acatcatgaa cagggatgtg gtcatcgtgg agagcagcaa ggtggatggt gtgcctgaaa
     1741 ggaagaagtt tggccgaatg aagctcctgc agttctcaga gaaccaccgg ccagcatact
     1801 gggggacatg gaataagaag acagcagtca tccgcccccg taacccctgg gtccaggaca
     1861 aaaagctttt agactatgag gtagacagtg acgatgagtg ggaagaggag gagcctgggg
     1921 agtctttgtc ccacagtgag ggggatgaag atgacgatgt gggggaagat gaagatgagg
     1981 acgatgggtt ctttgtgccc catgggtacc tgtctgaaga tgaaggcgta actgaggagt
     2041 gtgcggatcc agagaaccac aaagtacgcc agaagctgaa ggccaaggag tgggatgagc
     2101 tcctagccaa gagcaagcgc tttcgcgtgc tgcagcctgt gcaggtggga tgtgtttggg
     2161 cggcagaggc agccaactgc acaggttccg acttgaagct gctgcagcag ttcactgcat
     2221 gcctgctgga tgtgacatcc cctgatgagc cagagcccag ggcctccagg agggaaaaga
     2281 gggaccagca tatcctggcc cagttgcttc ctctgctaca tggcaatgtg aacgggagca
     2341 aggtgatcat ccgtgaattc caggagcaat gccgccgtgg cctgctgagc ctgccaagtc
     2401 ccaccccaca cctgcaggtg cccaactcag aagatgctgt tactgtgcca tccaaggcca
     2461 ggctgaagcg ccttatctcc gagaactctg cctatgagaa gcgtcccgac ttccggatgt
     2521 gctggtatgt gcacccacag gtgctcagga gctttggcca ggagtgcctg ccagtgccct
     2581 gccagtggac ctatgtcacc accatgccct cagcacccag ggaagacagt gtttccattg
     2641 agggacctgg ccagagcaca cctatgccac tcaagcggaa gccagcggcc accatgtgca
     2701 tcacacagtt tatgaagaag cggcgctatg atggacaggt tgggtctggg gacatggacg
     2761 gcttccaggc agacacagaa gaggatgaag aggatgacac agactgtatg atcatagatg
     2821 tgccagatgt tgggagtaac atgtcagaag cgcccatacc tgcgcccaca ctttgcaagc
     2881 gacaggtgtc gagttgaaag acctgtggga agttgacctg ggtgacaggg agttgtcgag
     2941 tgtaggcacc tgaagtgcaa ggctgggagt aggcatgttc tgggcagtgg aggctatgct
     3001 tccccttcag ccttgtagag ctgctgaggg agatggaaat ggagaccagc aacgacgtgc
     3061 tccctgcagc acctgattat caaccaccag actgagcctc tgctaactcc catgagagca
     3121 ctttgtccta cgctcctagg tctggagtct ggacagctac ttccaaattg taaagacccc
     3181 aggtctgcat gctaatctgc ccttagttaa gcattacctg attgacagat gcctgcttgg
     3241 gccttaatca cagcgcttgc tgtgggcaaa cacctgctat gaattatgcc agggatgatg
     3301 tggctgctgt gcaggccctg ggcaaatgta gacatgtata aacatactct acctaagccc
     3361 tgtatgtctt gtctcaacta tactatttat tccactggta
//
