LOCUS       XM_039080289            5817 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus chondroadherin-like (Chadl),
            transcript variant X1, mRNA.
ACCESSION   XM_039080289
VERSION     XM_039080289.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051342.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5817
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5817
                     /gene="Chadl"
                     /note="chondroadherin-like; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 11 ESTs, 2 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     67 samples with support for all annotated introns"
                     /db_xref="GeneID:100910434"
                     /db_xref="RGD:6504353"
     CDS             2819..5062
                     /gene="Chadl"
                     /codon_start=1
                     /product="chondroadherin-like protein isoform X1"
                     /protein_id="XP_038936217.1"
                     /db_xref="GeneID:100910434"
                     /db_xref="RGD:6504353"
                     /translation="MPHGQQLSLSSPRPQSFTLLLLMMFLSPAWNVAAQRCPQTCVCD
                     NSRRHVTCQHQNLTEVPDTIPELTQRLDLQGNMLKVIPPAAFQDLPYLTHLDLQHCQV
                     EQVAEGAFRGLGRLLFLNLASNRLSSLPQEALDGLGSLRRLELERNMLEELRPGTFGA
                     LGSLATLNLAHNALVYLPAMAFQGLMRTRWLQLSHNALSVLAPEALAGLPVLRRLSLH
                     HNELQALPGAALSQARSLARLELGHNPLTYTGEEDGLALPGLRELALDHGSLQALGPR
                     AFAHCPRLHTLDLRGNQLTTLPPLQVPGQLRRLRLQGNPLWCACHARPLLEWLVRARV
                     RSDGACRGPRRLRGETLDTLRPSDLRCPGDAAEDEDEDRPAGPRSPPRSLHEEARWAT
                     PCPPACVCVGETRHSACDGRGLQAVPRGFPNDTQLLDLRRNHFPSVPRAAFPGLRHLV
                     SLHLQHCGIAELEPGALAGLDGLVYLYLSNNQLSGLSAAALEGAPNLGYLYLEHNRFL
                     RIPGAALRALPRLFSLHLQDNAVDRLAPGDLAGARALRGLYLSGNHITQVSPGALGPA
                     RELEKLHLDRNQLRQVPTGALEGLPALKELQLSRNPFRALHDGAFQPVGRSLQQLFLN
                     SSDLEQISPRAFSGLGKGLQGLYLQQNQLQSLPAPMWLSGLELIDLSGNPFHCDCQLL
                     PLHRWLTGLNLRVGATCATPPSVRGQKVKAAASVFEACPGWIARKAKRTPTSGVSARR
                     TPIHGWH"
ORIGIN      
        1 taatcccacc acttgggagg cagacttagg cagatctctg agtctgaggc cagtagtctg
       61 gtctacagag tgagttccag gacagccagg gccacacaga gaaactttaa aaaacagtaa
      121 aacagctatg cataagctgg ccaaactgga tggcacgcac ctgttgtccc agcactttaa
      181 agccgcagcc agggtccaag atcagtttca gatgcatagc aactttgaat ccagccaggg
      241 ttacataata cccctctcaa agggccaagc aaactgaaaa atgaaagcta ccacaggcca
      301 gaaacgtgcg tctgaaaatg tacgagtgtt tgctgggatc cagctgtgca gcctattgat
      361 gcagggggtt tgtggattgg tttgtttttc tttttttaga cagtgtcaca ctgtgtagct
      421 gtgtctggcc ttgaattcag agattcaggc ttttcttgga actaaaggtg tgcaccacca
      481 tgtccagcct tggaagtttt gaaatgtgta tgtgctccag agatgcatgc ttaaatgcac
      541 ctttaacttg ctagatagcc taagtctggc cttgaatttc taactccacc acgaaccaaa
      601 aaacaaaagg aggggcaata aaatatctaa gacaggacca gacaggtggc tcactggttg
      661 agcacgctgg ctgctcttat agaggacctg ggtcccaaca atcaatggag gttgatggag
      721 atctgtgctc ccaccttggg ggctctggct ccctcttctg gcctctatgg gtaccagcca
      781 tgctacaatg ccctgcacac gtgtaggcca catcttaaat aaataaataa ataaatttat
      841 ttaaaatatc tcagacgatg gtaagctggt acatttttaa tccttctgtc ccagtctcct
      901 gaggtgtaca ccaccatctg gtttatgcct cagatctgtt tatagaatga aaacaccata
      961 taatccattg ggaaatggat atggctctgg gcatcaattc agatagcctc aagaatacgt
     1021 taaagtgaga tggaaaatac ttgcaagata cgttgtgtgt ggtagcttca gtgtatgtga
     1081 gtgcttaagt tcacagaaag gaaggagtta aagaagccgc gtgcctgggt ttgcaggttc
     1141 ctacctcaac tcctgcagca gcctagtgag ctaggtttta actttcagct gctgaatact
     1201 ccttcagagg gtcccagagt ctgcaggagt ccagtgatgc tgacccaccc gaaagctcct
     1261 ccaggcaccc cccctcccca ttgccaccca cgcccaccct ctggtccaag gactcggtct
     1321 gggccacgtt gttaagcctg tgccgcacag gcagcctgta actccagccg ctgctcccac
     1381 cccctggcca cagcctgggg aagccccagc tctgcccgga tgctcacaat gctgcccatt
     1441 cagctctgtc ctggctgctg agcccatggg caaagggggg tgggtactgc tggtgaccag
     1501 gcaaggactg tccctggtct ttcccttgtg tggggcctcc agacggggct ggcagttcca
     1561 gtcagcatgg agaggtaagt tttggggccc tgggggtgca agggagccat agatgaacta
     1621 gatggctaga gatgactact tacatctgct catgcgtcca agaggctggc tgcagagcca
     1681 ccggaccttc ctgtacctga ggtacctcag aggtagcccc taaaacagct ccagatgtag
     1741 ctgttcctgt ggtgttgccc tttgtagcct tcagggatcc gtggcagccc tctttgccct
     1801 gaacctttct ctcttcaggt atcagcctaa ccgccccctt cctaccctga ccctcaagcc
     1861 agagtctaga gaaggccgcc agcactaaga atggggtaaa ttctggtact aaagagagac
     1921 aaagccagac attagcaatc ctgggagaga ctatggggag gtccatgggg tggtgtttca
     1981 gccccacgtc agggaaggca gctcagagtt tacctgggac ccaagcatag aagaggagga
     2041 gctgagagga ttcactgctg ctgggcctgt accgtgggca gtgccactcg aggtgtgtga
     2101 tggagaatct ctactttctt cttgaggcat caggagttgg gacttttcac taatggggac
     2161 agctagacac tcgggagctt tctgtgggga gtactaggat cctatctgta gtctggaaaa
     2221 ttccctttgg ctgtcaggtg gagcactggg gaggccagaa gagccatggt ggcaaaaacc
     2281 atccctaaga aacaagcaag tggctgccat tatgaggcag agggatggat gtgtgggtgg
     2341 gtgcatcaat aaatggacat gtgagagcta tctgctctgc agtacataac ctgggccctc
     2401 aggtcccctg tcacacgcag gccagtcagc tgtgtggact caggtaacaa gaggacacag
     2461 gcctgggctg cctgcttacc atgacagggt ctctcaggct cttcaacatc tggccctccc
     2521 agttcaccct aaaacctggg ctaggtctgg gccttccctc ctgctgccaa actgaagtcc
     2581 agagccactg ggcagagtcg agactctgaa ctttctacat cttagccccc ccaaccacac
     2641 ccccaataaa ccagggctga ttacagaagc ttctgcctcc cccccgcgcc cccccccctc
     2701 cgaggtgagg gaagaaaacc aggtcacagc actttcctgt gctcagagaa cggagacctg
     2761 gagctgtgag gcaggagttg gctgtcctgt accaggggtt cagtacccac tagcattgat
     2821 gccccatgga cagcagctct cactctcctc tccgaggccc cagagcttca ccctgctgct
     2881 gcttatgatg ttcctgagtc cggcttggaa cgtagctgcc cagcgatgcc cacaaacctg
     2941 tgtctgcgac aactccagac ggcatgttac ctgccagcac cagaacctca ccgaggtgcc
     3001 agacaccatc cctgagctga cccagaggct ggacctccag ggtaatatgt tgaaggtcat
     3061 ccctccagct gccttccagg acctgccgta cctcacacat ctggacctgc agcactgtca
     3121 ggtggagcag gtggccgagg gtgccttccg tggcctgggc cgcctgctct tcctcaacct
     3181 ggcttccaac cgcctgagct cgctgcccca ggaggcactg gacgggctgg gctcactgag
     3241 gcgcttggag ctggagagga acatgttgga ggagctgcgg ccggggacct tcggcgccct
     3301 gggctccttg gccactctca atttggccca caacgccttg gtctatctgc ccgctatggc
     3361 cttccagggg ctgatgcgca ctcgctggct gcaactgtct cacaacgcgc tcagtgtact
     3421 ggcccccgag gctctggcag gcctgcccgt gctgcgccgg ctcagcctgc accacaatga
     3481 gctgcaggcc ctgccggggg ccgccctgtc ccaggcccgt agcctggcgc gcctggagct
     3541 gggccacaac ccgctcacct acaccggaga ggaggatggc ctggcgctgc ccggcctgcg
     3601 ggagctcgcc ctggatcacg ggtccctgca ggccctgggc ccccgggcct tcgcccactg
     3661 cccgcgcctg cacacccttg acctccgcgg gaaccagctg accaccctgc ccccgctgca
     3721 agtcccgggc cagctacgcc ggctgcggtt gcagggcaac ccactgtggt gcgcctgcca
     3781 cgcgcggccc ctgctcgagt ggctggtgcg cgctcgagtg cgctcggacg gcgcgtgccg
     3841 gggaccgcgg cgcctgcgag gcgagaccct ggatacgctg cggccttcag acctgcgctg
     3901 cccgggagac gcggcggagg acgaggatga ggaccggccg gccggtcccc gctcccctcc
     3961 tcgctccctg cacgaagagg cccggtgggc cacgccctgc cctcccgcct gcgtgtgcgt
     4021 cggggagacc cggcacagcg cttgcgacgg ccgcggcctg caggcggtgc cccgcggctt
     4081 ccccaacgac acccagctcc tggacctgag gcgcaaccat ttcccctcgg tgccccgcgc
     4141 ggccttcccg ggcctgcgcc acttggtgtc gttgcacctg cagcactgcg gcatcgcgga
     4201 gctggagccg ggcgctttgg cgggcctgga cggcctggtc tatctctacc tctccaacaa
     4261 ccagctctcg ggcctgagcg ctgcagccct cgaaggggcc cccaacttag gctacctgta
     4321 cctggagcac aaccgcttcc tgaggatccc cggggctgct ctgcgtgccc tacccaggct
     4381 cttctctctc caccttcagg acaacgcggt ggaccgcctg gcacctgggg atctggcagg
     4441 agcgcgggct ttgcgcggcc tttacctgag tgggaatcac atcacccagg tttcacctgg
     4501 ggcgctaggg ccagctcggg agctggagaa gctgcacctt gacaggaacc agctgcgaca
     4561 ggtgcctact ggagccttgg aggggctgcc tgcactcaag gagctgcagc tctccaggaa
     4621 cccattcagg gctctgcacg atggggcctt tcagcctgtg gggcggtcgc tgcaacagct
     4681 cttcctgaat agcagtgacc tggagcagat ttctcccagg gccttctcag gcctggggaa
     4741 agggctccag ggcttgtacc tgcagcagaa ccaacttcag tccctgcctg ccccgatgtg
     4801 gctcagcggg ctggagctca tcgacctcag cggtaacccc ttccactgtg actgccagct
     4861 gctcccgctg cacagatggc tcacggggct gaacctgcgg gtgggcgcca cctgtgccac
     4921 ccctcccagt gtccgtggcc agaaggtgaa ggctgcagct tctgtctttg aagcctgccc
     4981 aggctggatt gccaggaagg ccaagaggac accaacctcc ggggtcagtg ccaggagaac
     5041 tcccatccac ggatggcatt gaggaacaga cgaggttagc ccttgggcag gaggtctggg
     5101 tcccaaagtt gctgggagcc ccggcttttc ttggtcctga cttgtgattc ctgagctggg
     5161 caacgaccca tagtcacctt gcttgatgca gtcatgtccc ttctcctcac actttaagga
     5221 agtgacttta tgcctttgga tgccacaact tactcatcca tttctgattg tcctggatct
     5281 gtgtgggccc caccctcttc catccccacc tcatagacct ggctcctgtg ggttggaggt
     5341 gaagttcagg tgtgctgact ctgcctccca accacctgtc agtcacaggt tgctatatcc
     5401 cttgatgtga tactcagggc ctgacctcaa ctctcagttg tagcaatgtg ccttgatgta
     5461 tccaggaagg ctgagcaggc tgctgcaggg tgagccccaa gatgcaggag gccctgatga
     5521 tgcagacatt aagaccaagt gcggagtcca cctccaccat atcgtggaga agatgggcag
     5581 agagaaaggt gctgggaagg cgggagaagg ccgggcccct ccccgaactg tgtttgcaga
     5641 cttgaggcaa tcaaatggtg tttatattag tttcctgagg ttgcatggga ctggaccacg
     5701 aactgggtac aacaacaatg tgcctgactg tcctggaggt ttgaggttgg aaatcaaagt
     5761 gttgattttc aactgaagcc tggaataaaa agatcctatc ttgctgcttc tggccaa
//
