LOCUS       NM_019164               1665 bp    mRNA    linear   ROD 29-MAR-2024
DEFINITION  Rattus norvegicus chondroadherin (Chad), mRNA.
ACCESSION   NM_019164
VERSION     NM_019164.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1665)
  AUTHORS   Hessle,L., Stordalen,G.A., Wenglen,C., Petzold,C., Tanner,E.,
            Brorson,S.H., Baekkevold,E.S., Onnerfjord,P., Reinholt,F.P. and
            Heinegard,D.
  TITLE     The skeletal phenotype of chondroadherin deficient mice
  JOURNAL   PLoS One 8 (6), e63080 (2013)
   PUBMED   23755099
  REMARK    Erratum:[PLoS One. 2013;8(7).
            doi:10.1371/annotation/cb7d7b4c-624f-46e6-957e-13b355ca8e02]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1665)
  AUTHORS   Shen,Z., Gantcheva,S., Mansson,B., Heinegard,D. and Sommarin,Y.
  TITLE     Chondroadherin expression changes in skeletal development
  JOURNAL   Biochem J 330 (Pt 1) (Pt 1), 549-557 (1998)
   PUBMED   9461555
REFERENCE   3  (bases 1 to 1665)
  AUTHORS   Potter,E., Behan,D.P., Fischer,W.H., Linton,E.A., Lowry,P.J. and
            Vale,W.W.
  TITLE     Cloning and characterization of the cDNAs for human and rat
            corticotropin releasing factor-binding proteins
  JOURNAL   Nature 349 (6308), 423-426 (1991)
   PUBMED   1846945
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000010.1.
            
            On Nov 26, 2020 this sequence version replaced NM_019164.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AF004953.1, SRR22582424.1681877.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN06621351, SAMN06680420
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-821               JAXUCZ010000010.1  80009045-80009865
            822-985             JAXUCZ010000010.1  80011510-80011673
            986-1131            JAXUCZ010000010.1  80011910-80012055
            1132-1665           JAXUCZ010000010.1  80012283-80012816
FEATURES             Location/Qualifiers
     source          1..1665
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q26"
     gene            1..1665
                     /gene="Chad"
                     /note="chondroadherin"
                     /db_xref="GeneID:29195"
                     /db_xref="RGD:2336"
     exon            1..821
                     /gene="Chad"
                     /inference="alignment:Splign:2.1.0"
     CDS             51..1127
                     /gene="Chad"
                     /note="cartilage leucine-rich protein"
                     /codon_start=1
                     /product="chondroadherin precursor"
                     /protein_id="NP_062037.1"
                     /db_xref="GeneID:29195"
                     /db_xref="RGD:2336"
                     /translation="MARVLLLSLVFLAILLPALAACPQNCHCHGDLQHVICDKVGLQK
                     IPKVSETTKLLNLQRNNFPVLAANSFRTVPNLVSLHLQHCNIREVAAGAFRGLKQLIY
                     LYLSHNDIRVLRAGAFDDLTELTYLYLDHNKVSELPRGLLSPLVNLFILQLNNNKIRE
                     LRAGAFQGAKDLRWLYLSENALTSLHPGSLDDVENLAKFHLDRNQLSSYPSAALSKLR
                     VVEELKLSHNPLKSIPDNAFQSFGRYLETLWLDNTNLEKFSDAAFAGVTTLKHVHLEN
                     NRLNQLPSTFPFDNLETLTLTNNPWKCTCQLRGLRRWLEAKTSRPDATCSSPAKFKGQ
                     RIRDTDALRSCKSPTKRSKKAGRH"
     exon            822..985
                     /gene="Chad"
                     /inference="alignment:Splign:2.1.0"
     exon            986..1131
                     /gene="Chad"
                     /inference="alignment:Splign:2.1.0"
     exon            1132..1665
                     /gene="Chad"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggacttgtcg ctgccttagc cccccagccc cggctcaagg cgtcctgatc atggcccgag
       61 tactcttact cagtctggtc ttccttgcta tcctcctgcc tgcgctggcc gcctgccccc
      121 aaaactgtca ctgccacggt gatctgcagc atgtcatctg tgacaaggtg gggctgcaga
      181 agatccccaa ggtatcagag actaccaaac tgctcaacct gcagcgcaac aacttcccgg
      241 tgctggctgc caactcgttc cggaccgtgc cgaacctggt ctcgctgcac ctgcagcact
      301 gtaacatccg cgaggtggcc gctggcgcct tccgaggcct gaagcagctc atctacctgt
      361 acctgtccca caatgacatc cgggtgctgc gagctggagc cttcgatgac ctgactgaac
      421 tcacttacct ctatctagac cacaacaagg tgtcagaact gccccggggg ctgctctccc
      481 ctctggtcaa cctcttcatc ttgcagctca acaacaacaa aatccgagag cttcgtgcag
      541 gagccttcca gggtgccaag gacctgcgct ggctctacct gtcagaaaat gccctcactt
      601 ccctgcaccc tgggtccctg gatgatgtgg agaacctagc caagtttcac ctggacagga
      661 accaactgtc tagctacccc tcagctgccc tgagcaaact tcgggtggtg gaggagctga
      721 agctgtccca caaccctctg aagagcatcc ccgacaatgc cttccagtcc tttggcagat
      781 acctggagac cctctggctg gataacacca acctggagaa gttctcagat gctgccttcg
      841 cgggcgtgac cacactgaaa catgtccatc tggagaacaa tcgcctgaac caattgccct
      901 ccaccttccc ctttgacaac ctggagaccc tcactctcac caacaaccca tggaaatgca
      961 catgccagct ccgtggcctt cgacggtggt tggaagccaa gacttctcga ccagatgcta
     1021 cctgctcttc accagccaag ttcaagggtc agcgtattcg tgacacggat gccctccgca
     1081 gctgcaaatc ccccaccaag aggtccaaga aagctggccg ccattaaaca ggtcctgatc
     1141 cagccagtcc tggtgactgt tttccgctgg agagactact gatgttcccc ctaccatccg
     1201 caccttctcc cacagcctct gtggatgcac agagctaccc catacctagg tacatcctgg
     1261 cagggggcac tggactccct atagccaccc cggttccacc cagtggggtc ctagggagga
     1321 cacagaactc ctccccagcc actgtgcctg ggatctgcca tggctcctct cagagaagct
     1381 attatagaac ctctgtccat ctgtctatcg gagctaacca gtggtcatcg ggatgaccac
     1441 attattacca ccttcctcaa ttccctgctc ccctgccatt tggaaacaaa catcaagccc
     1501 ttgacccacc ctgattgcca gaaaaaattt caggctcatg ccccaactgt gccaatcccc
     1561 ctgcctgcca gggcgtgcta acaggatacc agtagtactt ggctgcatac ctttccatgc
     1621 tgtatttctg ccccggattt ctataaacat aaatgtctgt gtgta
//
