LOCUS       XM_006232929            5127 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus cingulin (Cgn), transcript variant X1,
            mRNA.
ACCESSION   XM_006232929
VERSION     XM_006232929.4
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086020) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_006232929.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5127
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..5127
                     /gene="Cgn"
                     /note="cingulin; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 4 ESTs, 160 long SRA
                     reads, 4 Proteins"
                     /db_xref="GeneID:310655"
                     /db_xref="RGD:1311992"
     CDS             209..3802
                     /gene="Cgn"
                     /codon_start=1
                     /product="cingulin isoform X1"
                     /protein_id="XP_006232991.1"
                     /db_xref="GeneID:310655"
                     /db_xref="RGD:1311992"
                     /translation="MMADPRGPVDHGVQIRFITEPEGAAEMGTLRRSGRRPAKDARAS
                     TYGVAVRVQGIAGQPFVVLNSGEKGADSFGVQIKGGNNRGSPGALSSDSELPENPYSQ
                     VKGYPATSQGSTSDEEPRDHLNGKLLRSQSQASLTGLALMSPSNRSTSLLELAPQKTP
                     SVNTIDTAPLSSVDSLINKFDGQKGSQVRGRTGRRTKTLPQEQQRKRSQSLDSRLSRD
                     TREDRELQSTNHWARGTKYDNHMDSSKTLPQKQSPFSSFSRSRQTQDWVLQSFEESRE
                     KVQDPAMVQFKSTPDLLRDQREAAPPGSADHMKATIYGILREGSADSEASVRRKVSLV
                     LEQMQPLGMVSPASTKALVGQAELTRKMEELQKKLDEEVKKRQKLEPSRIGLERQLEE
                     KAEECHRLQELLEKRKGEVQQSAKELQNMKLLLGQEEGLRHGLETQVKELQLKLKHSQ
                     NLDPGKESLLKDLLETRELLEELLEGKQRVEEQLRLRERELTALKGALKEEVASHDQE
                     VEHVRLQYQRDTEQLRRSMQDATQDHAAVEAERQKMSSLVRELQKELEETSEETGHWQ
                     NMFQKNKEELRAAKQELLQLRMEKEEIEEELGEKMEILQRDLEQARASTRDTQQVEEL
                     KKELQRTQGELKELQAERQSQEVAGRHRNQVLEKQLSVLRAEADRSRDLEEQNLQLQK
                     TLQQLRQDCEEASKAKVASETEAMVLGQRQATVETTLRETQEENDEFRRRILGLEQQL
                     KEARGLVEGGEAVEARLRDKVHRLEVEKQQLEEALNVAQEEEGSLAAAKRALEIRLEE
                     AQRGLARLGQEQQALNRALEEEGKQREALRKSKAELEEQKRLLNRTVDRLNKELEQIG
                     DDSKLALQQLQSQMEDYKEKARKEVADAQRQAKDWASEAEKNSGGLSRLQDELQRLRQ
                     ALQTSQAERDTARLDKELLAQRLQGLEQEAENKKRSQDDKARQLKSLEEKVSRLEAEL
                     DEEKNTVELLTDRVNRGRDQVDQLRTELMQERSARQDLECDKISLERQNKDLKTRLAS
                     SEGLQKPSASFSQLESQNQLLQERLQAEEREKTVLQSTNRKLERRVKELSIQIDDERQ
                     HVNDQKDQLTLRVKALKRQVDEAEEEIERLDSLRKKAQRELEEQHEVNEQLQARIKSL
                     EKDSWRKASRSAAESALKQEGLSSDEEFDSVYDPSSIASLLTESNLQTSSC"
     polyA_site      5127
                     /gene="Cgn"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 ggtaggtgga ctttcccctc cagggtccac gcccagcatc taaaggctgg gggaggggaa
       61 gggaatgatc tccagctaac gccacggaaa tgctagctgt atcgaagatt cctcttcaat
      121 atattacaat aaatatttac cgaacaaata aaggagagaa ctattcagag gccagcaagg
      181 agccctccta catgtggagc tggcactcat gatggctgat ccccggggcc ctgtagacca
      241 tggagtccaa attcgattta ttacagagcc agagggtgct gctgagatgg gcacccttcg
      301 tcggagtggg cggcggcctg ctaaggatgc tagagccagc acctatgggg tcgctgtgcg
      361 cgtgcagggc atcgccgggc aaccctttgt ggttctcaac agcggagaga aaggagctga
      421 ctcctttggg gtccaaatca aagggggcaa caaccggggg tccccaggtg ctctgagctc
      481 tgattcagag ctccccgaga acccctactc tcaagtcaag ggatatcctg ccacttctca
      541 gggcagcaca tctgatgagg agcccaggga ccacttgaat ggaaaactac tccgttccca
      601 gtcgcaagcc tctctgacag ggcttgctct tatgagtcct agtaatagga gcaccagctt
      661 gctggaacta gccccccaaa agactccctc agttaacacc attgacactg ctcccttgtc
      721 gtcagtggac tcgcttatca acaagttcga tggtcagaag ggaagccagg tccggggccg
      781 cacaggccgc cgcacaaaga ctcttcccca agagcagcag cggaagcgga gccagagtct
      841 ggacagcagg ctctcacggg atacacgtga agatcgggaa ctccagtcaa ccaaccactg
      901 ggctcgtgga acaaagtatg acaaccatat ggacagttca aagaccctac cccagaagca
      961 gagccctttc agcagcttta gccgttcccg tcagactcaa gactgggtgc ttcagagttt
     1021 tgaggagtca cgggagaaag tacaggatcc cgccatggtg cagttcaaat ccaccccaga
     1081 ccttctccga gaccagcggg aggcagcacc accaggcagt gcggaccata tgaaggccac
     1141 catctatggc atcctaaggg agggaagtgc tgacagtgag gcatctgtga ggaggaaagt
     1201 tagtttggtg ctggagcaga tgcagcctct ggggatggtt tctcctgctt ctactaaggc
     1261 cctggtaggg caggctgaac ttacccggaa aatggaggag cttcagaaaa agctggatga
     1321 agaggtgaag aagcggcaaa agctagaacc atccaggatt gggctagaga ggcagctgga
     1381 ggagaaggct gaagagtgcc accgactgca ggagctgctg gagaagagaa agggggaggt
     1441 ccagcagagt gccaaggagc ttcagaacat gaagctcctg ctgggccagg aagaaggact
     1501 acgacatggg ctggagaccc aggtgaagga gctacagctc aagctgaaac atagccagaa
     1561 tcttgatccc ggaaaggaga gtctcctgaa ggacttgtta gagacccggg aacttctgga
     1621 agagctctta gagggtaaac aacgagtaga ggagcagctt cggctgaggg aacgggagct
     1681 gacagccctt aagggggccc tgaaagagga ggtggcctcc catgaccagg aggtggaaca
     1741 tgtccggctg caataccagc gagacacaga gcagcttcgc cggagcatgc aagatgcaac
     1801 ccaggaccat gctgcagtgg aggctgagag gcagaagatg tcttcccttg tgagggagct
     1861 gcagaaagag ctagaggaga cctcagagga gacagggcat tggcagaaca tgttccagaa
     1921 aaacaaggag gagctgagag ctgccaagca ggaactgctg cagctgcgga tggagaagga
     1981 ggagatagaa gaggaacttg gggagaagat ggagatctta cagagggact tagagcaagc
     2041 ccgagccagt acaagagata ctcagcaggt tgaggagctc aaaaaggaac ttcaacgcac
     2101 ccagggggag cttaaagagc ttcaggcaga gcggcagagt caggaggtgg ctgggcgaca
     2161 ccggaaccag gtgttagaga agcagctgtc ggtgctgcgg gcagaggctg atcgaagccg
     2221 agatctggaa gagcagaacc tccagctaca aaagaccctg cagcaactgc ggcaggactg
     2281 tgaagaggct tccaaggcta aggtggcatc agagacagag gccatggtac tggggcagcg
     2341 tcaggcaaca gtggaaacca cacttcggga gacccaagag gaaaatgacg aatttcgaag
     2401 gcgcatcctc ggtctggagc agcagctgaa ggaggcccga ggtctggtgg aaggtgggga
     2461 agcggtggag gcacggcttc gggacaaagt gcatcggctg gaggtagaga aacagcagct
     2521 ggaagaggct ttgaacgttg cccaggagga ggaggggagc ctggcagcag ccaagcgggc
     2581 tctggagatc cggctagaag aggcccagcg ggggctggca cgcctcgggc aggagcagca
     2641 agcactgaac cgggctctag aggaagaggg gaagcagcgg gaggctctcc gaaagagtaa
     2701 ggcagagctg gaggagcaga agcgtttgct gaacaggact gtggaccgac tcaacaaaga
     2761 gctggagcag attggggatg actccaagct tgctttgcag cagctccagt cccagatgga
     2821 agattataag gaaaaggccc ggaaggaagt agctgatgcc cagcgtcagg ccaaggattg
     2881 ggccagtgag gctgaaaaga attcaggggg cctgagccgg cttcaggatg agctgcaaag
     2941 gctgcggcaa gccctgcaga catcccaggc tgaacgggac acagcaaggc tggacaaaga
     3001 gctgctggcc cagcgattgc aggggctgga gcaagaggct gaaaacaaga aacgctccca
     3061 ggatgacaag gcgcgacagc tgaagagcct agaggagaaa gtctcacggc tggaagcaga
     3121 gttagacgaa gaaaagaaca ctgtggaact gttaacagat cgggtgaacc gtggccggga
     3181 tcaggtggat caactgagga cagagctcat gcaggagaga tctgctcggc aggacttgga
     3241 gtgtgacaaa atctccttag agagacagaa caaggatttg aagacccggt tggccagttc
     3301 agaaggctta cagaaaccca gtgctagttt ctctcagctt gagtcccaga atcaactgtt
     3361 gcaagagcgg ctccaagctg aagagagaga gaagacagtt ctgcagtcta ccaatcggaa
     3421 actagaacgg agggttaagg agctctctat ccagattgat gatgaacggc agcatgtcaa
     3481 tgaccagaaa gaccagctaa ccctgagggt gaaggctttg aagcggcagg tggatgaagc
     3541 ggaagaggaa attgagcgac tggacagcct gaggaagaag gcacagcggg aactggagga
     3601 acagcatgag gtcaatgaac agctccaagc ccggatcaaa tccttggaaa aggactcctg
     3661 gcgaaaagct tcccggtcag ctgctgagtc agccctcaaa caagaggggc tgagctccga
     3721 tgaggagttt gacagcgtct acgacccctc atccattgca tcactgctta ctgagagcaa
     3781 cctgcagact agctcatgtt agctcatgct ctaaggacca caaacggcct tgtggtcaag
     3841 cctgtcccag ccagccctgc tctgctttgc tctatcctgc ctgcctcaga gtctttttta
     3901 tttttttccc ctatgagtga cccagttcag acttaagact gggaagggtc agaatgatgg
     3961 tgatgaacat tagcaatgag ctggtgggtg gactggtcct tttcactgga ggagtaggtg
     4021 tttagtcctg ccgagtcctt cctataggac ctctctacca tcccttatgg tagggccgat
     4081 ggtcagcatg tacactgact gggactggga aggacaggaa gggatggata ttgccatgtt
     4141 tgtaaagctt tatttcttta atatttaatc atacagctca gggaaataac ccaatgttgt
     4201 tctgctccct ctccctggat gcctgcaacc tttccccctc ccactctgga gcagggaggg
     4261 aacattatgg attatggaca tgtaggcatg gcgctaccca cttctcagat gcttcttttt
     4321 gcacagtcat aggtcctagc atctcttgag ttgcaatatt tttgttttcc ccaagtcact
     4381 gggtccaggg gatctttggt cttttttttc catccctgcc ttgctgcttt actctcagtg
     4441 ccttaccagt gtgcgagatg gatgaggaag ctgctcttgc cttttataaa cctgcacatt
     4501 catacctctc caaagaccag cctttcctca ttgggggccc tcagcctgtc cagaccccag
     4561 tggctgagca gctccaggct gctctgccaa ccagcccctg ggagaagggc tttgataggc
     4621 cttggtaagt tggtggggac tggttctgct cagggtttcc atcttcctcg ccctctgtga
     4681 ctgaggatgc tgccatgagg tggctgtacc tgggaaccat gacgactgtt catacaggtt
     4741 ctagagtcaa acatctagtc ccggtggcct ccttgtggct tctctgacca gatgtgccca
     4801 gcttctgtgg gagccaacag atccttgctt ttctcaggaa gtaggccctg attcagagct
     4861 ttgcctgggg ttagaagctg actctcagta gagaagggaa ggggtaatgg agaatgtatt
     4921 cctcctttgg gttttggggt gtgccaagct ctggtgggtg aaggtaatgg ggatggttcg
     4981 cctcttatct ttaaagtaag ttttgttctc atcaatgact tgtaatttca tgatttaaaa
     5041 aagatattct gcaaatcaga tattttctcc caatccagcc ttggtttatt ttaaattaaa
     5101 tattaaaaat gtcatatcta tatgaaa
//
