LOCUS       NM_001420253            2654 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus complement factor H-related 2 (Cfhr2), mRNA.
ACCESSION   NM_001420253 XM_006249949
VERSION     NM_001420253.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2654)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000013.1.
            
            On Apr 27, 2023 this sequence version replaced XM_006249949.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ211198.1, SRR26643286.36396.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760400 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on computational evidence
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-137               JAXUCZ010000013.1  53798059-53798195   c
            138-311             JAXUCZ010000013.1  53790636-53790809   c
            312-506             JAXUCZ010000013.1  53778110-53778304   c
            507-689             JAXUCZ010000013.1  53761346-53761528   c
            690-872             JAXUCZ010000013.1  53745416-53745598   c
            873-1043            JAXUCZ010000013.1  53742506-53742676   c
            1044-1238           JAXUCZ010000013.1  53735717-53735911   c
            1239-1409           JAXUCZ010000013.1  53735187-53735357   c
            1410-1586           JAXUCZ010000013.1  53731509-53731685   c
            1587-1769           JAXUCZ010000013.1  53729536-53729718   c
            1770-2654           JAXUCZ010000013.1  53726567-53727451   c
FEATURES             Location/Qualifiers
     source          1..2654
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="13"
                     /map="13q13"
     gene            1..2654
                     /gene="Cfhr2"
                     /note="complement factor H-related 2"
                     /db_xref="GeneID:688887"
                     /db_xref="RGD:1584079"
     exon            1..137
                     /gene="Cfhr2"
                     /inference="alignment:Splign:2.1.0"
     CDS             62..1966
                     /gene="Cfhr2"
                     /note="complement factor H-related protein 4; complement
                     factor H-related protein 3"
                     /codon_start=1
                     /product="complement factor H-related 2 precursor"
                     /protein_id="NP_001407182.1"
                     /db_xref="GeneID:688887"
                     /db_xref="RGD:1584079"
                     /translation="MRFCILLLFASIFLTSWLSTAKGEVEVKCLAPHIPNGNYTPHRI
                     NYTAEDEIQYECTDGFYPTTQGTVAKCTSTGWIPAPRCSLEPCDFPQFKNGYLYHENI
                     RRSYFPVPIGKEFSYYCDNGFLTPSGSYWDYLRCTRQGWEPEVPCLKTCLKSDIEIEN
                     GFLSQSDSKYLQNKKAQYMCKQGYVTADGETSGSITCLENGWSAQPSCLNSTKICGPP
                     PPIENGDITSFPLPVYIPPSSVDYQCQYLYQMQGNKTIICINGDWSEPPKCLRMACKP
                     PDIPNGIYSPQRVTYTAQDEIKFECKDGFYSATQETVAKCTSTGWIPAPKCMKPCEFP
                     QIKNGGLYHERRRRPYFPVPIGNEYSYYCDNGFLTPSLSYWDYLRCTEKGWEPEVPCL
                     KQCVFHYVENGESSYWQRKYVEEQAVKVQCYNGYSLPNGQDTITCTENGWSPPAKCIK
                     SCDVPIFENAGTNNDSTWFKLNDKINYECHVGYVNKHKHTKGSITCHHDGWSDIPSCY
                     DSTKICGPPPPIANGDTTSFPLPVYIPPSSVEYQCQSLYQLQGNKTIICINGEWSDPP
                     KCLHPCIISIEIMRKHNITFRTEENQRLYYQSGEMQEFKCKNGHHLATTQPLITICIN
                     GHLNYPVCTK"
     exon            138..311
                     /gene="Cfhr2"
                     /inference="alignment:Splign:2.1.0"
     exon            312..506
                     /gene="Cfhr2"
                     /inference="alignment:Splign:2.1.0"
     exon            507..689
                     /gene="Cfhr2"
                     /inference="alignment:Splign:2.1.0"
     exon            690..872
                     /gene="Cfhr2"
                     /inference="alignment:Splign:2.1.0"
     exon            873..1043
                     /gene="Cfhr2"
                     /inference="alignment:Splign:2.1.0"
     exon            1044..1238
                     /gene="Cfhr2"
                     /inference="alignment:Splign:2.1.0"
     exon            1239..1409
                     /gene="Cfhr2"
                     /inference="alignment:Splign:2.1.0"
     exon            1410..1586
                     /gene="Cfhr2"
                     /inference="alignment:Splign:2.1.0"
     exon            1587..1769
                     /gene="Cfhr2"
                     /inference="alignment:Splign:2.1.0"
     exon            1770..2654
                     /gene="Cfhr2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 actgttaact acaggattcc cagaagcagc accaaggctg gagtgcttta agcttctgaa
       61 gatgaggttc tgtatcctat tgctctttgc cagtatcttc ctaacctcgt ggctctctac
      121 tgccaaaggt gaagtagaag tgaaatgctt agctcctcat attccaaatg gtaactacac
      181 acctcacagg attaactaca cagctgaaga tgaaatacag tatgaatgta cagatggctt
      241 ctaccctaca acccagggaa ctgttgcaaa gtgtacaagt actggatgga ttcctgctcc
      301 aagatgtagt ttggaacctt gtgattttcc acaattcaaa aatggatatt tatatcatga
      361 aaacatacgt agatcttact tcccagtacc tataggaaag gagttcagct attactgtga
      421 caatgggttt ttgacacctt caggatcata ctgggactac cttcgttgta caagacaagg
      481 gtgggagcct gaagtcccat gcctcaagac atgtttaaag tcagatattg aaattgagaa
      541 tggatttctt tctcaatctg attctaaata tcttcaaaat aagaaagcac agtatatgtg
      601 taaacaggga tatgtgacag cagatggaga aacatctgga tcaattacct gcctagaaaa
      661 tggatggtca gctcaaccct catgccttaa ttcaacaaag atatgtgggc ctcctccacc
      721 tattgagaat ggagacatca catccttccc actaccagta tacataccac catcatcagt
      781 tgattatcag tgccagtatt tgtatcaaat gcagggcaac aaaacaatca tatgtataaa
      841 tggagactgg tcagagccac caaaatgttt acgaatggca tgcaaacctc ctgatattcc
      901 aaatggtatc tactcacctc aaagggttac ctacacagct caagatgaaa taaaatttga
      961 atgtaaagac ggtttctact ctgcaaccca ggaaactgta gcaaagtgta caagtactgg
     1021 atggatccct gctccaaaat gtatgaaacc ttgtgagttt ccacagatta aaaatggagg
     1081 tctatatcat gagaggagac gaagacccta cttcccagta cctataggaa atgagtacag
     1141 ctattactgt gacaatgggt ttttgacacc ttctctgtca tactgggact accttcgttg
     1201 cacagaaaaa gggtgggagc ctgaagtccc gtgcctcaaa caatgtgttt tccattatgt
     1261 ggagaatggg gaatcttcat actggcaaag aaaatatgta gaggaacagg ctgtaaaagt
     1321 ccagtgttac aatggctata gtcttccaaa tggtcaagac acgattacat gtacagagaa
     1381 tggctggtcc cctcctgcca aatgcattaa atcgtgtgat gtgcctatat ttgagaatgc
     1441 tggaactaac aatgatagca cttggtttaa actcaatgac aaaataaact atgaatgtca
     1501 tgttggatat gtgaacaaac ataaacatac caaaggctct ataacttgtc atcatgatgg
     1561 atggtctgac ataccctcat gttatgattc aacaaagatt tgtgggcctc ctccacctat
     1621 tgccaatgga gacaccacat ccttcccact accagtatac ataccaccat catcagttga
     1681 atatcagtgc cagtctttat accaactgca aggcaacaag acaataatat gtataaatgg
     1741 agagtggtct gatccaccaa aatgtttaca tccatgtata atatcaatag aaattatgag
     1801 gaagcataac ataactttca gaacggaaga aaaccaaagg ctgtattacc aatcagggga
     1861 gatgcaagaa tttaagtgta aaaatggaca tcatctggca acaactcaac cgttgattac
     1921 aatatgcatt aatggtcacc tcaattaccc tgtttgcaca aaataacatt taaagtatta
     1981 gtagaactta catatacatc tttgttccac taaggtgcat gttattatca atacagtaag
     2041 agctttactt ttgaactctt gcttaactca ttttcattta taagtataag cttgtattga
     2101 tgtatgatga ttaatctgga aactaagaga ctgcagacac caaggaaaat acactttttt
     2161 caaagctcct aaaccaaaac atgatatata ctagcacaaa aaccagttgc aataattaga
     2221 tattaacttc tctgtcttta tccactaatt tcccaaatct ttcaaagctt ctgctatacc
     2281 ctatgaaata aagctctgat tcacagtgaa cataaaacat gttctgagtc ttcaaaactg
     2341 tataatttca caaatatgta agaaaattat catatttata ttgctaatgg atataagtaa
     2401 gactgtgtat tgctttagtt ggtaattaat aagtaggaag atttttgtga aagaacatct
     2461 tgatgtgtga ctttttattt taattttttc aagcaattat acaatgactt aaattttaat
     2521 tacatgtatg attacagtga ctatcacaat attggcacta aaacctatga acattttgtg
     2581 taacttgcga acaagcaaga agcagcatat tctctgcaaa aatagaaaga aaaatacatg
     2641 ttaaacaaaa taga
//
