LOCUS       XM_039092827            8482 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus cilia and flagella associated protein
            99 (Cfap99), transcript variant X2, mRNA.
ACCESSION   XM_039092827
VERSION     XM_039092827.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051349.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039092827.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8482
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..8482
                     /gene="Cfap99"
                     /note="cilia and flagella associated protein 99; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 3 ESTs, 1 long SRA read, 2 Proteins, and 100% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 4 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:305453"
                     /db_xref="RGD:1564567"
     CDS             319..2274
                     /gene="Cfap99"
                     /codon_start=1
                     /product="cilia- and flagella-associated protein 99
                     isoform X1"
                     /protein_id="XP_038948755.1"
                     /db_xref="GeneID:305453"
                     /db_xref="RGD:1564567"
                     /translation="MAYYEKCIETVIKQLDKFKPEKDNPEQFLETVFTSLQQTLTPQK
                     LGFVLEVLSGCLEYQKLLTIVVDAFYARDGRLCLWSDYSLFEVICYLATFQLDELGFQ
                     LFCSIIKSQPVGKICKFLRFFFNPLNLCSWIKDEWSLIYETDHVTENWINPLMRWQPE
                     IQELIKQLEGGPSDHIPLLKTKAKLTVPKEFNLTVPRPRAITMPEPVPTIPKSKPVPQ
                     STYQEPKEQKLLQMIKTHNRRTAEELLLKANMEELRCAMPRLQKEPQAQEVEKKLWHQ
                     SVPSIRRTPNLTFYKPNKLPVKLNTATILREGALYQRQVEKELQRVDKLVDGAGDFSE
                     FLEWQKKMQAKDLEEQLAAGECRRLQGKLSHEEAILARQNLVQENKQKADKQKEESAE
                     LMLQCAERRLQEEKAMKELVEQVMEAQKNVKIVQMKLVKGRQQIVQEVIEESRELLQN
                     STKAAKEEQKRRCELIAQLRALETQPTRKEKLVDLTEIPGYGLEGEMSVVELRERLAL
                     LKESQKREQEEKRDQIIQSKRAKSQMLQNTVEQISLCRAAMGRTAALRWEEKKAQATS
                     LATPSQDERVLELKRKMEERAAERRRQTAAPQQVVSPPRTQRPQLRAQEMLQHWVEMD
                     QSRERRLRERQEANRPCHPTHHHLEAS"
ORIGIN      
        1 caccaaggga gggcggctca ggactacaag tcccagcgcc caccgcgggc agggcctgag
       61 cggcgttgct aggtgacggc gcctaaacga tgcttaggcg atctgcgggt gcaggagctg
      121 gccagtgagc gctcccgccc gcggtgcctg gagagacgac gcgggggcag gtggaggcct
      181 aaggaggcca agaggcccgc agttcaaggc gcggcccatc ctgagcggag attgaggcgg
      241 caggaacctg aagcagccgg ccatatcaca agtgcagtga ggaaacagag gggtggatgc
      301 agggaccctc ctccaaagat ggcctactat gaaaaatgca ttgagactgt gataaagcag
      361 cttgacaaat ttaagcctga gaaggacaat cctgagcaat tcctggagac agtgttcacc
      421 tccttacagc agactctgac cccccagaag cttgggtttg ttttggaggt tctgtctggc
      481 tgccttgaat accagaagct actgaccatc gtggtggatg ccttctacgc acgggatggc
      541 cggctctgcc tgtggtctga ctacagcctc tttgaggtga tctgctacct ggccaccttc
      601 cagctggatg agctcggctt ccagctcttc tgcagcatca tcaagtccca gcctgtgggt
      661 aagatttgca agttcctcag attcttcttt aaccccttga acctgtgctc atggatcaaa
      721 gacgagtgga gcctcatcta cgaaacggac catgtgacag agaactggat taaccctctg
      781 atgagatggc agccagagat ccaggagctg atcaaacaac tggagggagg gccatccgat
      841 catattcctc tcttgaagac caaggccaaa ctcacagtgc ccaaggaatt caacctgact
      901 gtcccaaggc cccgcgccat tacaatgcct gagcctgtcc ccactatccc caagtcaaaa
      961 cctgtccctc agagtaccta tcaggagccc aaggagcaga agcttctgca gatgatcaag
     1021 acacacaacc gccggacagc tgaggagctg ctgctgaaag cgaacatgga agagctacgg
     1081 tgtgccatgc cccggttaca gaaggagcca caagcacagg aagtagagaa gaagctgtgg
     1141 catcagtccg tacccagcat acgcaggact ccaaatctga ccttctacaa gcctaacaag
     1201 ttaccggtca agctgaacac agccaccatc cttcgagaag gggccttata ccagcggcag
     1261 gtggagaagg agctgcagag agttgacaaa cttgtggatg gggctgggga cttttctgag
     1321 ttccttgagt ggcagaagaa gatgcaggca aaggacctgg aggagcagct ggctgcaggc
     1381 gagtgccggc ggctgcaggg aaagctgagc cacgaggagg ccatcttggc ccggcagaac
     1441 ctcgtgcagg aaaacaagca gaaggctgac aagcagaagg aagagtcggc cgagctaatg
     1501 ctacagtgtg ctgagaggcg cctgcaggag gagaaggcca tgaaagagct ggtggagcag
     1561 gtcatggagg cacagaagaa tgtcaagata gtccagatga agcttgtgaa gggccggcag
     1621 cagatagttc aggaggtgat agaggagagc cgggagttgc tacagaatag cacaaaggca
     1681 gccaaagagg agcagaagcg acgctgtgag ctcattgctc agctgcgtgc actggagaca
     1741 cagcccacac gcaaggagaa gctggtggac cttaccgaga tcccaggata tggtctggaa
     1801 ggtgagatgt ctgttgtgga acttcgagaa cggctggccc tgctcaaaga gtcccagaaa
     1861 cgagagcaag aggagaagcg ggatcaaatc atccagagca aacgagccaa aagccaaatg
     1921 ctacagaaca cagtggagca aatctcactg tgccgtgcag ccatgggcag gaccgcagcc
     1981 ttgaggtggg aggaaaagaa ggcccaggcg acaagcctgg cgacaccctc ccaggatgag
     2041 cgtgtgctgg agctgaagcg caaaatggag gagagggcag ctgaacgccg caggcagaca
     2101 gcagcaccgc agcaggtcgt gtcaccgcct aggacccaac gcccacaact gcgggcgcag
     2161 gagatgttac agcactgggt ggagatggat cagagtcgcg agcgcaggct gagggaaagg
     2221 caagaagcaa atcgcccctg ccaccctacc catcatcacc tagaagcctc ctgagccagc
     2281 cggcagcccc acgcctacac tgcgtgcggc tgccgacgtc agcccccacc cctactcctc
     2341 cgacagtggc tcccttcctg cacccctgcc acaaagcctg cccctatatg tttgctccag
     2401 aaaaaaaggt gtggtggcat ttagaaattc taaacaaatg tactcttcct ctggactgca
     2461 actggctgcc acgtttttat atgctgaact tggctctttc ctatgccttg catgtctttc
     2521 cttaagacag gaagcgcctc tctccaccca gagccagagg atatgtctgg gaccctcaca
     2581 caagtgtgag atggccaatg ccgtcagctt cttaagcata ggctctggac tggctcttct
     2641 catgtctcac gtggatcatc agagatcact tcacgcagca actatacccc acttgtctcc
     2701 tgttctgcta atgaggccac ctgtccttaa agaagtgact ctggcttaag ctaactgcag
     2761 gtacttctca gggtcctctc accattgtca tcaagaggcc gaattcaaca aaataggaga
     2821 ccttggggac aacggctcaa cagggcagat cagatgagtt ctaagttcct ggccttggtg
     2881 ctgttctgtg ctgggggaag ctggacttta ataacaggtg tgtggaatga atgcctgctg
     2941 gtgaaacgta gccggacgaa taaagctgca ttgtgatgtt tggtttttag gaagaagatg
     3001 gtgataagtc ttggggaggg aataaggcag ggggaaacta ctagatgggt agatattcag
     3061 gagagagatg acaccccccc ccatcctcct taggcctgca gaggtccctc aggagataag
     3121 gctgttcccc gggggtactt gaggccaaga aagtttctta gcattgacag aaacaaatta
     3181 aagtctcaga gttctattca agtattgtag aactaacaga attccaaggc tcttgtagaa
     3241 ccctggcagg ggagtgggag gtgtttaggg gctgctcagg aacaaaggaa tccttgtctc
     3301 cctgttgaat tagaattgga ggcagattca gttttattta aataagaatc acatttttta
     3361 aaacagattt tgtgtgattc aaactcattt aaaatggagg aatgatgcta gtggtttgag
     3421 gaaagacaaa ggcaggattt aggatgtgtt gaacatgagt gctgtcacca ggctaactgg
     3481 gaagatgacc attgtcactg ttctaggttg aaccagctct tgttggtcca gcccctgcag
     3541 agaagcaagt gtgcatggca tcctaaagca aatactggcc atggggatta cctctcactt
     3601 taaggccagc ctctggccag cccagcaaag ggggtggtcc tagcctcagt gcagtttggc
     3661 agtcagcaag gtctcccttt gccttgtttt tctggactga gctgctgctc agagacagcg
     3721 caagagcacc tagggtgttt gctccacagc tactaatgtt gtggcaagtg gctgctgtgt
     3781 gtgatagaac cgtggccaga tgttaacata tcaatatcca ctgccttgca gcttcatacc
     3841 ctggtcttgc tgggcctggc aatgcactca tataatctga gcacttggga agaagaggcg
     3901 ggaaacagaa gcaagagctg agaccagcat ggacaatgta gcatgtttca agatagtcca
     3961 actacgtagc aaaacctgca ttaaaagagg tagagtgctg ggcagtggta gcacacacct
     4021 ttaagcttag cacttgggag gcagagacag gcagatctct atgagttcga ggccagcatg
     4081 gtctacaaag caagttccag gatagctggg gatacccaaa gataccctgt ctcgaaaaac
     4141 aaaacaaaca aacaaacaaa aaagaggtag aggattggca gtggacctct gtgagttcca
     4201 ggctagtctg gtctacagac tgagtaccag actgccagca caacatagag aaaacccaca
     4261 aaaaccaaaa caagagagag ggcaagcagg atggctcagt ttttttgttg ttatacaaac
     4321 ctgacaacct gagctctctg gaacccacgt tcaagtggaa ggagagaacc aactgcacaa
     4381 agttatccag tgatgtctac agatgctcca tggcacgtga cctctcctgc catgcccctc
     4441 ccccattgag aagaaaatta caacacagag gcagtttacc cctcagcatc tgaaccatcc
     4501 ctggcaccat aactttcttt ggccaatagc atacaagtgt cagtgtgcca gtttagattc
     4561 agtcgtcagg cggccttgag gccctgcttg ctctcttgga agcctgtctg gcctcaggtg
     4621 aacatgatca gggtgccctg ctgagatgat accatgtgaa ggagtgctag ctgtccctga
     4681 gagtccatcc tagaccatgc tacaaccaat agattgggac agacagagca agcattttgc
     4741 tcttcttgta gactgattaa agacatgctg ttaaagtatg gagatctgag atatttgttc
     4801 agaagtaaat gtgaagtaat ataccttcta gtcagggcat tcctatttgt cttagggttt
     4861 tattgctaga aaagacacca tgaccacagc aacttttata aaggaaagca tttaattgag
     4921 gctgtcttac agtttcagag gttcagtcca ttattgtcgt gggaggaaac atggcagtgt
     4981 gcagacaggc atggtgctgg agacggagct gggacttcta catcttgatt tgcaggcagc
     5041 aggagactgt gtgcaacact gagcatagct tgtgcatata aaacctcaaa gtccaccccc
     5101 acggtgacag acctcctcca ataagactgc acttcctaat agtgccactc cctatggttc
     5161 aagcacttaa acaggggggc tgtacctatt caaacaccac aatattaaag acccactgcc
     5221 ttctccttat atgcattttt tgacatggtg gctggtcagc ccgagatcta aggcccacag
     5281 ggtgctgtga atgctttttc tggacctttc ttggtggttc acatgtgtga acctatggaa
     5341 gcactgataa tgccagtttt tctccacaag ctaatgttta aaacaaggag acactatttg
     5401 tgagggagca agttcactgt caagtgatgt tcagagaaaa cttgtttctg agcatgaaat
     5461 tatttgtagt tgactttcac taatacatct tcagcatatt aaatttaccc aaagccaggt
     5521 gtagcatatg ctgtgatctc agcatgtgtg tgggtaaatc ttaatctggc ctgggctaca
     5581 cagtttcatg acagcctaaa ctataaagat agagacactg tctcaaaacc aaacaagaag
     5641 ctaacagacg gctcaggagg tcaatccttg ttcaaccctg agttcaatcc ttgggacctg
     5701 ataaattatt tctccagtgc tgaaatgagc caattcaagc cagattatat atgcatgctc
     5761 taggggaagc tgctctaggg ggtgggggtt cactgggcct aagaactgat accagagaag
     5821 tcaccatggg aagggaggga gagggaagag ggaagagaga agagagaaac tgagaaagag
     5881 caagcatcga gagaaaacag aagaaaccaa aatgtctaga ttatataggg aagagcctct
     5941 gggggaaggg cagcccagcc ccgaggctgg agagttcagg gttgggcagg gtatgacagg
     6001 tggggactga gggatgccgg gagaacctgg agggcaggtc tgctttgcta agttaaatat
     6061 gcacctcagt cccttgtccc atggtctgaa accaaacatc ccagactttt ttgttgatag
     6121 aaaataaata aggggagaca atcatctgtg actactccta ctgacattgg ggtgttgcca
     6181 tggggtgggg gtgggggaca aaagctggga tgttggccaa gtctgggaag agctggttgt
     6241 ttcatagctg tccaggctgt gagaccatct ggggatagga gtgtgcgtgc ccagttgaag
     6301 caggctgttg taaggctggg ccagagaaca cctgagagta attgctttgg atatgtcctc
     6361 ctggatgcag gttctgagga aatatgtgga cttggcaaga tgctagaaca tgtatgtatg
     6421 tatgtatgta tgtatgtatg tatgttaagg gcagaaggta aagttaagga gtttggggag
     6481 gatgttcatt tgaaactttt aggcccatag tcttagtatt tggaggaggg gtggggaggt
     6541 cttgggacca gggaaaagat ctcacctgga agagagaaac aggctgttga ttgacaatac
     6601 ttatctggag tccatttgac ctataggaag tggatttgag tggattccct gaagcttaca
     6661 agaatctttt taaatttata aaaagatcct ttataacttg catttaccaa catcaaaaca
     6721 ccatcctaga ccctcaattt tcattcctcc catatatctt atcactttcc tatcatcatc
     6781 cacgtttgtt ttttctcaca tcctttaacc ttcagaactt gcatttacca accccagaac
     6841 accttcctgg accacaaaca cttcttagaa gcttccatat cctcagaccg tacaggaccc
     6901 acacagttta aggaaagagc tgactcagac cagcccgcct ctgactgcta catgtgctct
     6961 gtggtacatg tatgtgcact cagtaagtaa acaagccagg tgatgtgaca catgtcttta
     7021 atcccagcac ttgggaggca aaggcagaca gaagtttgag gccagcatgg tctacaaatt
     7081 gagttccaga ctacatgaga tccagcctca aaaaaagtaa actaaaaaat gtgtaaaatc
     7141 tcaaatattc caagaattca ggaagttgag acaagagacc tcgggttaga aaccaatctg
     7201 ttctatgtaa caaaccctat ctcaaaaaac caaaagatga caaatataaa acctacagtg
     7261 ggtgtggtgg cactgccttt aatagtactt gggaggcaaa ggcaggccca tgtctgagct
     7321 ggaggccagc ctggtctaca gagcaaattc caggacagct gggggtagac agagaaacac
     7381 tattggaaag aatataaaaa aaatcccttt ccattcaaac aaacaaacaa aatatgccca
     7441 attatactac cacttcctag cccattctaa cacagatctt cccccttttg tttttttttt
     7501 ttttttaaat tttttttttc tggagctggg gaccgaaccc agggccttgc gcttgctagg
     7561 ccagcgctct aaccactgag ctaaatcccc gacccgatct tccccctttt tcctcatctt
     7621 aaaaaattaa atctatgagg tcctttgctt ctgtttttca tactaagtca aagcagtccc
     7681 ttgaactttt ttcctcacct attagagggg ttctctgtga aaacaggtgt ggtttgtgcc
     7741 acctaatcaa ggtcaaaagg gaacccctgc tattttgggt tttcctttaa ggtgtgcctc
     7801 agactagcca ggtaggtgtc taggatttga gaaagcagcg tctgggagag atgtgttcag
     7861 aggggcaaga gagctgactg ttacactgtt agataaacga gagctggaaa gatgtgaact
     7921 ggctgctcac aactgcaatt ccagctccag ggaatccaat atcctcacac acacatacac
     7981 cggaaaaaca caaattcaca aaatgaggaa agataccttt aaagggatgg agcaagggta
     8041 aggatcttta taagtcgtgt gaatggggtt gcaagcagtt cacatcagat ctaagaaaca
     8101 gaaacttact aattacagat agaaacttta acttgcaagg acttaacata ggacaaataa
     8161 aacttttttg attttttgtt tttgtttttt tgttttgttt tgtttgaggc agagtttctg
     8221 tatagccttg gctgtctttg aactagccta tagactaggc ttggctcaca cttaaagaga
     8281 tctgcctgcc tctccctcct gagtgcttgg attaaaggtg tgggccacca ctgtctgcta
     8341 gaaagttaga actgttttac tgcaaacaga acctttaacc tataaggtat agtattcttg
     8401 ttttggtgta ttcctgttct ggtgtcactt aagtattcaa aacttttttt ttaataaaaa
     8461 aaatctacat ttttcttaca aa
//
