LOCUS       NM_001134601             689 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus CFAP97 domain containing 1 (Cfap97d1), mRNA.
ACCESSION   NM_001134601 XM_001081501 XM_573200
VERSION     NM_001134601.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 689)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000010.1.
            
            On Aug 18, 2009 this sequence version replaced NM_001134601.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643293.66409.1,
                                           SRR26360181.1730064.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-176               JAXUCZ010000010.1  87434008-87434183
            177-247             JAXUCZ010000010.1  87434901-87434971
            248-366             JAXUCZ010000010.1  87435238-87435356
            367-490             JAXUCZ010000010.1  87437731-87437854
            491-547             JAXUCZ010000010.1  87438388-87438444
            548-689             JAXUCZ010000010.1  87439065-87439206
FEATURES             Location/Qualifiers
     source          1..689
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q32.1"
     gene            1..689
                     /gene="Cfap97d1"
                     /gene_synonym="RGD1565533"
                     /note="CFAP97 domain containing 1"
                     /db_xref="GeneID:498004"
                     /db_xref="RGD:1565533"
     exon            1..176
                     /gene="Cfap97d1"
                     /gene_synonym="RGD1565533"
                     /inference="alignment:Splign:2.1.0"
     CDS             53..547
                     /gene="Cfap97d1"
                     /gene_synonym="RGD1565533"
                     /note="uncharacterized protein C17orf105 homolog"
                     /codon_start=1
                     /product="sperm axonemal maintenance protein CFAP97D1"
                     /protein_id="NP_001128073.2"
                     /db_xref="GeneID:498004"
                     /db_xref="RGD:1565533"
                     /translation="MNNSLDYLAYPVIVSNHRQSTNFRKKLDFGHYILHKNRVQIVKP
                     AVDTSPPMAHTHYILKLSKLQGEQKRIDKIEYENKQLCQKIANAHRGPAKVDCWNEYL
                     SRSLNRESRNRELVKITMENQGILRRLSDRKPHYDRRASEMDWQNSRRYIRNTTRYLL
                     FQEE"
     exon            177..247
                     /gene="Cfap97d1"
                     /gene_synonym="RGD1565533"
                     /inference="alignment:Splign:2.1.0"
     exon            248..366
                     /gene="Cfap97d1"
                     /gene_synonym="RGD1565533"
                     /inference="alignment:Splign:2.1.0"
     exon            367..490
                     /gene="Cfap97d1"
                     /gene_synonym="RGD1565533"
                     /inference="alignment:Splign:2.1.0"
     exon            491..547
                     /gene="Cfap97d1"
                     /gene_synonym="RGD1565533"
                     /inference="alignment:Splign:2.1.0"
     exon            548..689
                     /gene="Cfap97d1"
                     /gene_synonym="RGD1565533"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aagtgcctca cagagaagcc aaggtgtctc acttttgaag ttagactaga agatgaacaa
       61 ttccctggat tatctggcct atcccgtaat agtctctaat cacaggcaaa gcacaaactt
      121 caggaagaaa ctggactttg gccactacat attgcacaaa aatagagttc aaatagtgaa
      181 gcctgccgtg gataccagtc ctccaatggc gcacacacat tatattttaa aactgagcaa
      241 actccagggt gaacaaaaga gaatcgacaa aattgaatat gaaaataaac aattatgtca
      301 gaaaattgcg aacgcccatc gaggccctgc caaggtggac tgctggaatg agtatctttc
      361 aagaagctta aacagagaat caaggaatcg ggaactagta aaaatcacca tggaaaacca
      421 gggcatccta aggaggttga gtgatcgcaa accccactat gaccgcaggg catcagagat
      481 ggattggcag aattcaaggc gatatatcag aaacacaaca cgatatcttc tcttccaaga
      541 agaataggtt actcaccgtg gaaaagatac cgagaagacc ctaaaattta ttggctctca
      601 ggatcttaag acaccgtgga atggctgcat tctctgtctt aggatgttac aataaagctt
      661 ggcacaaaaa cagggcaggc aaatggaag
//
