LOCUS       XM_577523               1351 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus cilia and flagella associated protein
            96 (Cfap96), transcript variant X1, mRNA.
ACCESSION   XM_577523
VERSION     XM_577523.8
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051351.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_577523.9.
            
            On Jan 21, 2021 this sequence version replaced XM_577523.7.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1351
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1351
                     /gene="Cfap96"
                     /note="cilia and flagella associated protein 96; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 ESTs, 2 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 22 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:502086"
                     /db_xref="RGD:1564308"
     CDS             257..1207
                     /gene="Cfap96"
                     /codon_start=1
                     /product="UPF0602 protein C4orf47 homolog"
                     /protein_id="XP_577523.4"
                     /db_xref="GeneID:502086"
                     /db_xref="RGD:1564308"
                     /translation="MPIEGGKTDMERIGLFSEMEYITVGDRYVSPFNRPFNEAASKNR
                     QMLPGGTKEMSNLQAGYFDPQFARIFEGEGYLNLNQVRRQYMMAEAKKNLGKAFIPSS
                     GEKKPSGLGSYYGTIGGPVPFFSAQIKPRDKYQPPGKNLYTNPGKKGTGYGYANVTIG
                     RQLSHSSDLYDAAKQNFKKESEEHHRLMKGSPFKLHLHPKDYFDTNPYFLEHPLPPLR
                     REEKKESSVKPFKPSSPGKKAGGMKAGTFEPYPSHSADPYVVKVGKVMPSKGEKVFHP
                     PNGPKSRPIESIMALNVRRALNVKNYKNASSSTLEKQLVY"
ORIGIN      
        1 cctaacaagc gccagctgca gcttgtggaa ctgtgcggcg cgcgcctctg cagctgtgcc
       61 aaaggctcaa gcccgggcac aggcgcgtgg ccccaagctc ttcaagctcg gcggtggcgt
      121 gatccccgac ccgggatctg atcctggttg tggaattgat taggtgcctt tttggagagt
      181 tttcagtgta aagtaggatt ttgctgtaaa agaagatcta agatcctttg tgaaggtacc
      241 accccaagaa gcaatcatgc cgatagaagg cgggaaaacg gatatggaga ggattggcct
      301 cttcagtgag atggaataca tcacagtggg cgacagatat gtgtcaccat ttaatcgacc
      361 cttcaatgag gctgcaagca aaaatagaca gatgctccct ggggggacca aagaaatgtc
      421 caatctccag gcagggtact ttgatcccca gttcgcaagg atttttgaag gggaaggcta
      481 cctgaatttg aatcaagtga ggagacagta tatgatggca gaagccaaga agaacctagg
      541 caaagccttc attcctagta gcggagagaa aaagccaagt ggattaggaa gctattatgg
      601 aaccatcggc ggccctgtcc cattctttag cgctcagata aaacccaggg acaaatatca
      661 gccaccgggg aagaatttat acaccaaccc gggaaaaaaa ggaactggat acggttatgc
      721 caatgttacc ataggcaggc agctttcaca ctcttctgac ttgtacgatg cagcgaaaca
      781 gaattttaag aaagaaagtg aagaacacca tcggttaatg aaagggtcac ctttcaagct
      841 gcatcttcac ccaaaggact attttgatac taacccttat tttttagagc atcctttacc
      901 tccactgagg agagaggaaa agaaggagtc ttctgtaaag ccctttaagc cctcctctcc
      961 tggcaaaaag gctggtggaa tgaaagcagg aacatttgaa ccttacccat cacactcagc
     1021 tgacccttat gtggtgaaag tgggaaaggt gatgccttcg aaaggtgaaa aggttttcca
     1081 cccaccaaac ggaccaaaaa gcagacccat tgaaagtata atggcgctga atgtcagaag
     1141 ggcactaaat gtgaagaact acaagaatgc ctcctcttcc acactggaaa aacagctagt
     1201 ttactagatc ctcttggaag cgcagagaat tcacaatgtt ctggaacaag cagctctgca
     1261 gcagctaaag gaaatttaaa catgaggctc aactctaatg tccttcctga ttttaatgct
     1321 ttttaataaa taatgttggc taatgactta a
//
