LOCUS       XM_017593016            4024 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus cilia and flagella associated protein
            92 (Cfap92), transcript variant X5, mRNA.
ACCESSION   XM_017593016
VERSION     XM_017593016.2
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086022) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_017593016.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4024
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..4024
                     /gene="Cfap92"
                     /note="cilia and flagella associated protein 92; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 7 long SRA reads, 3 Proteins"
                     /db_xref="GeneID:100362908"
                     /db_xref="RGD:2323785"
     CDS             472..3897
                     /gene="Cfap92"
                     /codon_start=1
                     /product="uncharacterized protein CFAP92 isoform X2"
                     /protein_id="XP_017448505.1"
                     /db_xref="GeneID:100362908"
                     /db_xref="RGD:2323785"
                     /translation="MALQAWDWEEEERASTRPLSTASDYHSASECETEEYPKSRTPGN
                     EWDSEDQFSSLHSSEGPACISNSDVPQVVPCKFVISLAFPSLLGNKGKPTNVPDKKKA
                     AKSENRAGKARQFYHIEYFFLPDDIEPKIVDIVVFPNVAKVFLDSGIKTVKPWKDDDK
                     FWVSWSQTFHVNMTKELLKKMNFHKITLKLWDTKDKVSKKVRYHRVKTSAYSEDSDSF
                     EEVKNLVLSQKRLSVIVDGKVNIVPEELKEENVPGDQEKAEKHSKSPQEPETPSKNEE
                     CEKLLKMEESSSRRTTMKTPISLSGATMMEIKELIEKPSLSSLTNMVEKQKSQLKGKE
                     IEVKKKNPKKVKKYQTEEERDQRQEGAPWKQSTFSIQLPVMPLLAGWQTVICRGSEKS
                     ANILDCFLTLKTEVPIMTEEQKQELNPLTIKIRCASCLPVQPVSIHDLERLCSPVYCR
                     YQFHKTPVHETKGEPHGTHVFFHDLNVIFLGAMHPSDLREYLEGPPMVVEVHDRDRKS
                     EEYSRKPTLFGEDLIDSYYNLQAFISSKDTENNPFESQNKIWDPYGVAKVSFADLLLG
                     YKYLNLIVPIHNCEPKSPNWSQDSRSRRTIGLQAPTDVQHSSVPIGNYLEANSLLKLR
                     VDVAVPLSSSWSRVPEFNLMGTHFGRIIFVFSAKKLSLLQNLLHDITVINAKALELDS
                     YPLQKIQQILSAFKVRVKIQEQQSLDVLTGFHLLDGKIHLFILEGLADHGLRRLWESY
                     QSSVTTSNRAACKVLYDSRLLFRHRLYADLETVLFHVHLFRPVSVLLRYPALYVRGAV
                     SRMTFQALSRIHDICHSSTKLKDVISRDLLPSSCMIKDLSQEFGVPISQEELIDGQVL
                     PVSPQLDDNEEDVQHQTSNLPLEIQVHQDKYLQWRNNMLLKNQVHRDSVVQKNITEAY
                     QFTKQSQKSMKRIIRIAIPENKTVHNYSTQTMNSTELAKKQMLQEMAKEPRKRFTYSQ
                     NYLSAMVDLQDPKEEEKKAQKKSRQAWLTAGGFQVWGLQSAIGSHQQDLRLPPIRELN
                     EEWQESALFANVLKPVLDRERWGWSQRHKDFDLYKKPPLDFQLPSLLAPKRASGGRRK
                     ADIRSSEQRWRSQVTPRPPSLHGSISMQPHDLFSLSDPSSCTKHSVSPNLHVS"
     polyA_site      4024
                     /gene="Cfap92"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 agtgttccag aatgttctat ctcatctgac gacctagaac agtacgcact gggaagcttg
       61 ggacttgctt ccagctccaa ctctactgac tctgctctga gactaaaagt ctggtgcacc
      121 aaggcagagc agaagctgtg tgtgttgtga gaagcccctg cctgctcgtc ccccattccc
      181 cgtagtgaat tccttgttga aatttatacc ccccaccacc tccccgaata tctagaagaa
      241 gcaggctccc atcagagcct atagccagga gccgaactca gccgcaggaa ggaagccccg
      301 cccccagccg tagactgtga tctcctggca accgcctaac agagtctttt tgggactgtg
      361 ctcccttagc gcctgcgctg aactcccctg attcaagtgg ctgcaactgt gcagcaggtg
      421 caggagccaa caggtgtgcc cactcacagg accattctag tgctgtgcga catggccctg
      481 caggcatggg actgggagga agaggagaga gcaagcacga ggcccctctc cacggccagt
      541 gattaccact cagcgagcga atgtgagacg gaggagtacc cgaagtccag gaccccaggc
      601 aatgagtggg actctgagga ccagttcagc agcctgcatt cctcagaggg gcctgcctgc
      661 atctctaact ctgatgtgcc ccaggttgtc ccctgcaaat tcgtgatttc actggccttc
      721 ccctcactac tgggtaataa gggaaaaccc accaatgtac ctgataaaaa gaaggccgct
      781 aaatcagaaa accgggctgg gaaggctcgt cagttctacc acatcgagta ttttttcctg
      841 cccgatgaca tagaacccaa aatagttgac atcgtggtgt ttcctaacgt agccaaagtg
      901 tttctggatt caggaataaa gactgtaaag ccatggaaag atgacgacaa attctgggtg
      961 tcatggagcc aaacttttca tgtcaacatg acaaaggaac tgttaaagaa aatgaatttc
     1021 cacaaaatca ctctgaagct ctgggacacc aaggacaaag tctcaaaaaa agtcaggtac
     1081 caccgggtga agacatcggc atattcggag gactcagact cctttgagga agtgaaaaat
     1141 ttggttttga gtcagaagag gctgtctgta attgtcgatg gcaaagtcaa cattgtccct
     1201 gaagagttga aagaggagaa tgtaccaggt gaccaagaaa aggcagaaaa acactcgaaa
     1261 tctccacaag aacccgaaac cccttctaag aatgaggagt gtgagaagtt actgaagatg
     1321 gaggagtctt catctagacg gaccactatg aagacaccca tttctctgag tggagcaacc
     1381 atgatggaga tcaaggaact tattgagaag ccatcgttga gcagcttaac caacatggta
     1441 gaaaaacaaa agtctcaact taaaggcaaa gagatagaag taaagaagaa aaacccaaag
     1501 aaagtgaaga agtatcagac agaagaggaa agggaccaga ggcaggaagg cgccccctgg
     1561 aagcagagca ccttctccat ccagctgccc gttatgccgc tccttgccgg ctggcaaacg
     1621 gtcatctgcc gtggcagtga gaagtctgcc aacattttag actgcttttt gaccttaaaa
     1681 acagaagttc ctatcatgac tgaagagcaa aaacaagaat tgaaccccct gaccataaag
     1741 atcaggtgcg cctcttgtct tccagtccag cctgtatcca ttcatgatct ggagaggctg
     1801 tgcagccccg tgtactgcag ataccagttc cacaagactc cggttcacga gaccaaggga
     1861 gagccccatg gaactcacgt attttttcac gacctcaatg tcatcttcct tggggccatg
     1921 caccccagtg acttgaggga atacttggag gggcccccca tggtagttga agtccatgac
     1981 agggaccgga agtcagagga gtattcccgg aagcctaccc tgtttggaga ggaccttata
     2041 gattcctact acaacctcca agctttcatc tcttccaaag acacagagaa taaccccttc
     2101 gagtcacaga acaagatctg ggatccttat ggggttgcca aagtcagttt tgctgacctc
     2161 ctccttggtt ataagtactt gaacctgatt gtccccatcc acaactgtga gccaaagtct
     2221 cccaattgga gccaggatag caggagcagg aggactatag gactgcaggc tcccacagat
     2281 gtccagcaca gctcagttcc cataggcaac tacctggagg ccaactcttt actcaagctc
     2341 cgagtggacg tcgctgtgcc actgagtagt agttggtcca gagttcccga gttcaaccta
     2401 atgggcactc attttggccg catcattttt gtgttcagcg ccaagaagct gtccctccta
     2461 cagaacctgc tgcacgacat caccgtgatc aatgccaaag ccctggaact ggacagttat
     2521 cccctccaga aaatccagca aatcctgtca gccttcaagg tgcgagtgaa gatccaagag
     2581 cagcagagcc tggatgtgct cactggcttc catctgctgg atgggaagat ccatcttttt
     2641 attctagaag gcttggcaga ccatggcttg aggaggctat gggagagtta ccagagcagt
     2701 gtcactacct ccaaccgtgc agcctgcaag gtgctctatg actccaggtt gctcttccgc
     2761 caccgcctct acgctgacct ggagaccgtc ctgttccacg tacatttgtt caggcccgtg
     2821 tccgtgctcc tgcggtaccc tgcactctat gttcgcgggg ctgtgtcacg catgaccttt
     2881 caggcactgt ccaggatcca tgacatctgc cacagcagca ccaagctcaa ggacgtgatt
     2941 tctcgagatc tgctgccctc ctcctgcatg attaaagacc tgagccaaga gtttggggtt
     3001 cccatttctc aggaagagct catagatgga caggtgttgc cagtatcacc ccagctcgat
     3061 gacaacgagg aggacgtcca acatcagact tctaatctcc cactggagat ccaagtccac
     3121 caggataagt acctgcaatg gcggaacaac atgcttctga agaaccaagt ccatagggat
     3181 tccgttgttc agaaaaatat cacagaagcc taccagttca ctaagcagtc tcaaaagtca
     3241 atgaagagga taattagaat tgccattcct gagaacaaaa ccgtccacaa ctacagcacc
     3301 cagaccatga attccacaga gcttgccaag aagcaaatgc ttcaagagat ggccaaggag
     3361 ccaaggaaga gattcacgta ttcacagaat tacctctcgg ctatggtgga tcttcaggac
     3421 ccaaaggaag aggagaagaa agcccagaag aagtcccgcc aggcctggct cacagccggt
     3481 gggttccaag tatggggtct tcagagcgcc attggaagcc accagcagga tcttagactg
     3541 ccacccatca gagagctaaa tgaggagtgg caagaaagcg ctctgtttgc taatgtgctg
     3601 aagcctgtgt tggatcggga gaggtggggc tggagccagc gccacaagga ttttgacctg
     3661 tacaagaagc cgccacttga ctttcagttg ccttctcttc tggctccaaa gcgtgcatct
     3721 ggtggtaggc gaaaggcaga catccggtct tctgaacaac gttggcgcag tcaagtcaca
     3781 ccaaggccac ctagtctcca tggcagtatc tctatgcaac cccatgactt attctctctc
     3841 agtgacccat cgtcctgtac taaacactct gtctcaccta acctccacgt ctcatgaatc
     3901 ttcaacagga ctataccact caagtcccac cttccacggc cgctggtttc attagtagta
     3961 taatgaaggg gcttagctca gtgcccataa ccctgataca aatgcacgat tgttccaaga
     4021 gtaa
//
