LOCUS       XM_008768768            3463 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus cilia and flagella associated protein
            91 (Cfap91), transcript variant X1, mRNA.
ACCESSION   XM_008768768
VERSION     XM_008768768.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051346.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_008768768.4.
            
            On Jan 21, 2021 this sequence version replaced XM_008768768.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3463
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="11"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3463
                     /gene="Cfap91"
                     /note="cilia and flagella associated protein 91; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 ESTs, 6 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 45 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:303920"
                     /db_xref="RGD:1305539"
     CDS             90..3128
                     /gene="Cfap91"
                     /codon_start=1
                     /product="cilia- and flagella-associated protein 91
                     isoform X1"
                     /protein_id="XP_008766990.2"
                     /db_xref="GeneID:303920"
                     /db_xref="RGD:1305539"
                     /translation="MSQTVTIQEPRTNVPGFLFQCRDVLRAKGRSATRVYDFLYDPLF
                     IVSSERDHAQANIQATLVRSRLKKVPNFRSMFSNLFHHPRYSMYWSKSDPVPPHVSRE
                     WRGQEAKHKEVLRLRAAVDASFQKPEEKYEDADVSGKNRYKFFDRPFLPFLQPLPLNV
                     VLSTAKTGPLLLSPESSKYSIMPTKSTVGTQTDYRDADIQTDPYSPEYVVCQDTIPEL
                     LTLANLTWGRGLPAGLAEVEMIERAREKRAWEATLPPLSDSLQAEKRRKMMNAMERKE
                     WAFREGEIEKLQELRLEVLKQLLKRREENQNEMDMRHLNNQWCELQEKKEAKVSQIHH
                     RHVSNIRKLVGKGKNIEGKLQRRDIIRDYSNFASQVYGPLSRLGRFPDNNSEDFVVRN
                     HYLNTYEGLMELESSLPDFVTQPRIQAPKPKVITTKAGFLKRMARTDYELAEIHKALL
                     DKKNKGPEGPKPLRFLQKNPIPQPRLPTPSLEMTSYEEGEIEMAIIYLQKLLRGRVVQ
                     NMMFEGKEKRLELIMELRTSHALQEDDKLVKKAEKQVTLALQRQRNLHEDKLSVIENH
                     LGDLEGRVLADMFDFLSKELVRLQEERRIHAFAMLAERQRRMREAEESGRRQVEQRRL
                     KQEDQIFMEVIKVHQSTVTSYLEDIILTTEERTAEEQAREEIEKIAQEINNIAYEMEN
                     RRTNLQSEEIVAELVYSFLIPEVQKDFVKEKVRNAQRKHILAAHQIIHSNTESMLHQH
                     AIEEEQRSFLEQTETSNSDVPTLSVSDAPTLSISDAPTLSVSDAPTLSVSDAPTLSVS
                     DAPTLSVSDMPALTVSDAPPISVSDEPPPSVSDKPPPSVSDEPPPPVSVEPPPPVSDE
                     PPPSVSDEPPPPVSDEPPPPVSDEPPPSVSDEPPPPVSDEPPPSVSDEPPPSVSDEPP
                     PPVSDEPPPPVSDEPPPSVSDEPPPPVSDEPPPSVSDEPPLPVSDEPPPSVSDEPPPS
                     VSDEPPPPVSDEPPPPVSDEPPISASDSETVKHTQDEEEG"
ORIGIN      
        1 tgcgtctgag gttgccatag ctacggtgta cacggctacc aagcctccca tagctggttt
       61 tctgctggcg ggaggaagac ggcagcacca tgagccagac agtgaccatt caggagccca
      121 ggactaacgt tccggggttt ctgttccagt gcagagatgt gttgagggcc aagggcagat
      181 cggccactcg agtgtacgat ttcctgtacg acccgttatt tattgtgtcg agcgaacgag
      241 accatgcaca ggccaacatc caagccaccc tggttcgaag cagactgaaa aaagtcccca
      301 actttcggtc catgttcagt aacctgtttc atcatccaag atactctatg tactggagca
      361 agtcagaccc tgtcccacct cacgtctctc gagaatggag gggacaagaa gccaaacaca
      421 aagaagttct ccggcttcgt gctgcagtgg atgcctcttt ccagaagccc gaggaaaagt
      481 atgaagatgc ggatgtctct ggaaagaacc gctataagtt cttcgacagg cccttcctgc
      541 cttttcttca gccgttgccg ctcaatgtcg ttttatcaac agccaagaca ggaccacttc
      601 ttctctctcc tgaatcttcc aagtactcaa tcatgcctac caagtccact gtgggcactc
      661 agactgacta ccgggacgca gacattcaaa cagacccata ctctccagaa tacgttgtgt
      721 gtcaagacac cattcctgag ctcttgaccc tggctaacct gacctggggc cgaggtctcc
      781 cagcaggact ggctgaagtg gaaatgatag agcgtgcccg ggagaagcga gcttgggaag
      841 ccactctgcc cccactgagt gacagcttgc aggctgagaa gaggaggaag atgatgaacg
      901 ccatggagag gaaggagtgg gccttcagag aaggggagat cgaaaaactg caggaactgc
      961 gcctggaggt cttgaaacag ttgctgaaga ggcgtgagga gaaccagaat gagatggaca
     1021 tgaggcacct gaacaaccag tggtgtgaac tgcaggaaaa gaaggaggcc aaagtatcgc
     1081 agatccatca cagacatgta tcaaacatca ggaaactcgt gggcaaaggg aagaacatag
     1141 aagggaagct gcaacgcaga gacatcatca gggactattc caacttcgca tctcaggtct
     1201 acggacctct gtctcgcctt ggccgtttcc cagacaacaa ctcagaggac ttcgtcgtca
     1261 gaaaccacta tctcaacacc tatgaaggat taatggaact tgaatcgtcc cttcctgatt
     1321 ttgtgacgca gccgaggatc caggctccga agcctaaagt cattaccacc aaggccggct
     1381 tcctgaagag gatggccagg actgactacg agttggcaga gattcacaag gcactgttgg
     1441 ataagaagaa taaaggtcca gaaggaccga aacctctgcg attcctgcaa aaaaatccca
     1501 tccctcagcc tcggcttcca accccctctt tggagatgac ttcctatgaa gaaggagaaa
     1561 tagaaatggc tatcatctac ttgcagaagt tactccgggg cagagtcgtg cagaacatga
     1621 tgtttgaggg taaggagaag cgactggagt tgatcatgga attgcgcacc agccacgccc
     1681 tgcaggagga tgacaagcta gtgaagaaag cagagaagca agtgaccctg gctctacagc
     1741 ggcagaggaa cctgcacgag gacaagttgt cagtgattga aaaccacttg ggtgacctgg
     1801 aaggaagagt gctagcggat atgttcgact tcctgtccaa agagctggtg aggctgcagg
     1861 aggagaggag gatccacgcc ttcgccatgc tggccgagcg ccaacggcgc atgcgagagg
     1921 cagaagagag cggtcggcgc caagtggagc aaaggcgcct gaagcaagag gaccagatat
     1981 ttatggaggt gattaaagta caccaaagta cggtgacctc ctacctggaa gacattatac
     2041 tgaccactga agagagaact gcagaggagc aagccaggga agaaattgag aagatcgccc
     2101 aggagatcaa caatatcgct tatgaaatgg agaaccgccg aacgaatctt cagtcagagg
     2161 agattgttgc cgagctggtt tacagttttc tcatcccaga ggtacaaaaa gactttgtca
     2221 aagagaaagt gaggaacgca cagcggaagc acattctagc agcccatcag atcattcaca
     2281 gcaacacgga atccatgctc caccaacacg ccattgagga agagcagagg tcgttccttg
     2341 agcagactga gacctcaaac tctgacgtgc caactctctc agtctctgat gcgccaactc
     2401 tctcaatctc tgacgcgcca actctctcag tctctgacgc gccaactctc tcagtctctg
     2461 acgcgccaac tctctcagtc tctgatgccc caactctctc agtctctgac atgccagctc
     2521 tcacagtctc tgatgcacca cctatctcag tctctgatga gcctcctccc tcagtctctg
     2581 ataagcctcc tccctcagtc tctgatgagc ctcctccccc agtctctgtt gagcctcctc
     2641 ccccagtctc tgatgagcct cctccctcag tctctgatga gcctcctccc ccagtctctg
     2701 atgagcctcc tcccccagtc tctgatgagc ctcctccctc agtctctgat gagcctcctc
     2761 ccccagtctc tgatgagcct cctccctcag tctctgatga gcctcctccc tcagtctctg
     2821 atgagcctcc tcccccagtc tctgatgagc ctcctccccc agtctctgat gagcctcctc
     2881 cctcagtctc tgatgagcct cctcccccag tctctgatga gcctcctccc tcagtctctg
     2941 atgagcctcc tctcccagtc tctgatgagc ctcctccctc agtctctgat gagcctcctc
     3001 cctcagtctc tgatgagcct cctcccccag tctctgatga gcctcctccc ccagtctctg
     3061 atgagccacc tatctcagcc tctgattcgg aaactgtgaa acatactcaa gatgaggaag
     3121 aaggctaggt gagtctacct ttccacctgg aagaaagtcc tggaggagga cgcgcagttc
     3181 cattcagctt tgggcacaac ttcaaccaag tgtgacatga gtggactgtc actaaaaaca
     3241 aaaaacaaac aaaagcgaaa caaaaatgaa gcactttcat caaaactgac tcacctcatc
     3301 taggttaggg taccaattgt tgagtttatt agacagagtt ggctctatag caactgaatt
     3361 cttgcaatct aaaaaacaaa aacaagaccg taggttattt ttggggaggt cattttagcc
     3421 tacaatgtac tccatcacaa ataaagcatc atggatgtgt gga
//
