LOCUS       NM_001400836             819 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus cilia and flagella associated protein 90
            (Cfap90), mRNA.
ACCESSION   NM_001400836 XM_341475
VERSION     NM_001400836.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On Jan 27, 2022 this sequence version replaced XM_341475.8.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BF565431.1, SRR26360186.1852576.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760434 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-262               JAXUCZ010000001.1  36678042-36678303   c
            263-379             JAXUCZ010000001.1  36656321-36656437   c
            380-819             JAXUCZ010000001.1  36654287-36654726   c
FEATURES             Location/Qualifiers
     source          1..819
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1p11"
     gene            1..819
                     /gene="Cfap90"
                     /gene_synonym="RGD1308544"
                     /note="cilia and flagella associated protein 90"
                     /db_xref="GeneID:361192"
                     /db_xref="RGD:1308544"
     exon            1..262
                     /gene="Cfap90"
                     /gene_synonym="RGD1308544"
                     /inference="alignment:Splign:2.1.0"
     CDS             17..559
                     /gene="Cfap90"
                     /gene_synonym="RGD1308544"
                     /note="uncharacterized protein C5orf49 homolog"
                     /codon_start=1
                     /product="cilia- and flagella-associated protein 90"
                     /protein_id="NP_001387765.1"
                     /db_xref="GeneID:361192"
                     /db_xref="RGD:1308544"
                     /translation="MEGPAKKEQRAMDPGGVKEKEEKVEEEAGEEEGEEEEEEEITAA
                     TLRGKPRPLPISAISAFSYIPPRHQGPKEHSYFSREGQTGIVSLYDCVFKRRLDYNQK
                     LHRDDREHAKNLGLHINEEEQERTVPVLMSSVYGKRINQPIEPLNRDYGRVNHVRTDF
                     YRKNDIPSIKTPGFGHITPA"
     exon            263..379
                     /gene="Cfap90"
                     /gene_synonym="RGD1308544"
                     /inference="alignment:Splign:2.1.0"
     exon            380..819
                     /gene="Cfap90"
                     /gene_synonym="RGD1308544"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gggacgcaga agcctgatgg agggacccgc caagaaggag cagcgagcga tggaccccgg
       61 tggcgtgaag gagaaggagg aaaaggtgga agaggaggca ggagaagaag agggagaaga
      121 ggaggaggag gaggaaatta ccgccgcaac cctgcggggc aaaccccgac ctttgcccat
      181 ctcagcgata tcagctttca gctacatccc tccacggcat cagggcccca aggagcacag
      241 ctacttcagt cgcgagggcc agacagggat tgtctccctc tatgactgtg tttttaagag
      301 gagactagat tataaccaga aattacatcg agatgacaga gaacatgcaa agaacctggg
      361 gcttcatatt aatgaggagg aacaggaaag gactgtgcca gtgctgatgt cctctgttta
      421 tgggaaacgc attaatcagc ccattgagcc cctaaacaga gactatggcc gtgtgaacca
      481 tgtacggacc gacttctaca ggaagaatga catccccagc atcaagacac ctggctttgg
      541 gcacatcact ccagcctgaa gcagttgtgt ggtttatagg gcactctgag gtaccctgtc
      601 agcaagtaag gtagtattgg aacccatttt cctgttcatg tcacctgtag ccgcaaggag
      661 gataagcaca cacatatcta aggtggtcct ggctcagaac ctgggcaagc acctttactc
      721 atgttaaaag ctttagtgta aagattttca ctggacttgt ttaaaatgac actgactgat
      781 tcattctgag actgtgaata aaagaaagct tgcctccca
//
