LOCUS       XM_008764399            5853 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus cilia and flagella associated protein
            74 (Cfap74), transcript variant X1, mRNA.
ACCESSION   XM_008764399
VERSION     XM_008764399.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_008764399.4.
            
            On Jan 21, 2021 this sequence version replaced XM_008764399.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5853
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5853
                     /gene="Cfap74"
                     /note="cilia and flagella associated protein 74; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 ESTs, 2 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 10 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:100362748"
                     /db_xref="RGD:2324110"
     CDS             587..5455
                     /gene="Cfap74"
                     /codon_start=1
                     /product="cilia- and flagella-associated protein 74
                     isoform X1"
                     /protein_id="XP_008762621.1"
                     /db_xref="GeneID:100362748"
                     /db_xref="RGD:2324110"
                     /translation="MEEPTVQFSDEELVDNFPTLDDERIQLEDLEFEVEQPPEELEDG
                     SDNSLAKKQSADLEKMKKTTTKDRVQALHLRKSLNLLDKMHEEKDVFIQKTKGELRIC
                     RQRMDLLDKQQESLAAEIATEKEANNMAAIGRLQAASRRLQTELENEKDLQSKITAML
                     KESENAMWHIEIQKGLFEDVRKHHEEEAEARQRSLKVHSAQQLQKEKEALEKSERNRL
                     LRARKSLHTQKELGLRHQKLVEDAQRNHRIAVKFLKASLGRVREQEQKEEMESRKHMQ
                     RRMDAVLALKNNINASRETLKKFQVWSQTRAQLANQKALTEKEEILAQGGDAFKYLCH
                     QQKHQELEAQKRAFEEEQKLRKQEIVSRILKEEAEEEQRKRRQRPPPKAIDRWTLRDR
                     TWKYISDICEGKTVCTSTYQLDEMLLYPKPLRVLKAISSESMQTDPGSINTEDEVLAE
                     PDVPGLWSKESYQPHQVPKEDMERKPVGGSKMEKDILARTMERLRSGVIQKQVVSGRE
                     FKGRPFNSKPEVIHFKDFDIGKVYKKKITLINATYTINYCKLVGVEENLKDFIHIDFD
                     PPGPMSAGMSCEVLVTFKPMINKDLEGNVSFLAQTGGFSVPLKCSTKKCSLSLDTELI
                     DFGSYVVGETTSRMITLTNVGGLGTKFKFLLDSELYEMDDSQPIVKISSLFNCEDKTL
                     YEKLISSYSEQQLEVNEFSSMDLLSQKESEKQLDDAEVTTAAVSAMTMPPSEEQAEIT
                     LGEVREGEIGPFSSIKVPIIFTPIIPGEVQNKFKVVFKDPQSPTLYFRATGTAIDVPV
                     WVPRATVDLKICMYDRLYQDSITVHTRSKAALRLKFEVCKELRGHIELLPETGYIQAQ
                     STYSVQLKFLPRQSLPEDARKYFDPASRVLEAPMTIRVADQIKPVRFTVQAIVTTSDL
                     EINPSEINFGYCTIYEAIRTEIRLSNLSLLPQEFGFVGLPKYIDIQPNDGFGTILPLE
                     TLRLDLIFQPIKAREYKFELICKSEINRCFKLSCQAIGVHPPLELSHYQIKFSATSLY
                     DTSVSTLYVINSHVSMNKLIHSLPRIGSEEASPVGPTSFEFLLPPKSPITISPSVGTV
                     LPGKRCLVQVAFQPVLPQDKIFEEAIQLLGKETETKTKETGQKKELWKQSLSMVRVHN
                     RERLTRTSTTQSTELQRPEVNVSSIEFQAAQATLSKAFQGKFERFVIPCVVASGDIKD
                     RKTTEPLSFSPHNTLYLELWCPAVAPFIVVTSHNGKTVFNFGDIAVGHRSIKKITLQN
                     ICNEDLTLGYSVLNPNGPFVRLNPFSKLCSGETQTLVLSFSPRESILAQETLDIITKR
                     GTLSLTLLGTGVASMITCSIEGNTLNMGYVLARESVSTTFKLQNESLLPIKFWVRLES
                     LSKKKAETYQQLPKFLTSREQRTEIVGTQNYNGQSVFSISPVEGLMFPGKAQEFTVTF
                     SPDHESLYFSDLLQVVLFEKKVSHQIFLKGAAREHMMFVEGSDPLDVPVESLAVITAF
                     DPEHKEEAEEIKPILVTLNYVQFDTDTTTPPATRELQVGCIRTTQPSPRKTVEFNLDS
                     VSWLQHKGFSIEPSRGFVERGQTKTINISWVPPADFDPDHPLIVSSLLQLRGDIKETY
                     KVIFVAHVVTEQ"
ORIGIN      
        1 tagtagttga cccccaagtt tcaactggct tccgtcaagc aatcaatcat ctgctccagt
       61 ctccaggaga atcctagggg caacagtcac ctccgactca gccctcggcg acgctcccaa
      121 gccctctccc taccactccc caccccaccg gctgctgcac tacgcctgcg caaccacagc
      181 cctgcccgcc aaccctacac agccttccgt tgccatggag ctgcgcgtcc aaactacgca
      241 gcctcaaacc cacggtggct gaggggcagt cgggcagtta agaggctaag gaactgatcc
      301 tgcggggcca gtgctgagga accgtggccg aggatctgtt tcgggggtgg gggggagcga
      361 ccctgttgcg ggaccactgt ctagggatca tttgtgaggg gtcgttgcta agggggaggt
      421 ctctaggaac catttttgag ggactgttgc tgagggacct ccaccgagga gccgttcctg
      481 agggggtttg ccaacagtcc agcccattcc tgggggacct ttgcagaaat ctcatcgctg
      541 aggaacatca ctggactggc cagagagcta atttctgact cccagtatgg aagaacctac
      601 tgtccagttt tctgatgagg aacttgtgga caacttccct accctggatg acgaaagaat
      661 ccagttagag gatctggagt ttgaggtaga acagcctcct gaggaactag aggatggcag
      721 tgacaacagt ttggccaaaa agcagagtgc agacttggag aaaatgaaga aaacaaccac
      781 gaaagacaga gtccaggcgt tgcatcttcg gaagagtttg aacctcctag acaagatgca
      841 tgaggagaag gacgttttca tccagaagac caaaggggag ctgcgcatct gtcgtcagag
      901 aatggacctc ctcgacaaac agcaggagag cttggcggct gagatcgcca cagagaaaga
      961 agccaacaac atggctgcta tcggccgtct ccaggctgca tccagacgcc tgcaaacaga
     1021 gttagagaat gagaaagatc tgcagtccaa aatcacagcc atgctgaagg aaagcgagaa
     1081 tgccatgtgg cacattgaga tccagaaggg actatttgag gatgtcagga agcatcacga
     1141 agaagaggca gaagctagac agaggagcct caaggtgcac tcagctcagc agcttcaaaa
     1201 ggagaaagaa gctttggaga agtcggaaag gaaccgcctg ctgagggccc ggaaatcttt
     1261 acatacacag aaggagctgg ggctgagaca tcagaagcta gtggaagatg cccagagaaa
     1321 ccacagaatt gcagtgaagt tcctgaaggc ctctctggga agagttcgtg agcaagagca
     1381 gaaggaagag atggagtcac gcaagcacat gcaacggcgc atggatgctg tgctggccct
     1441 gaagaacaac atcaatgcca gtcgggaaac gctaaagaag ttccaagtat ggagccaaac
     1501 cagggcacag ctggctaatc agaaggccct tacggagaaa gaagagatcc tggcccaagg
     1561 tggagatgcg ttcaagtacc tttgccatca acaaaagcac caggaactag aagcccagaa
     1621 gcgggctttt gaagaggagc agaaactccg gaagcaggag attgtaagtc ggattttgaa
     1681 agaggaagct gaggaagaac aaaggaaaag gagacagcgt ccacccccta aagccataga
     1741 ccgatggact ctgagagaca ggacttggaa gtatatctct gatatttgtg aagggaagac
     1801 tgtgtgcacc agcacttacc agctggacga gatgctgtta tatcctaagc ctctgcgtgt
     1861 gttgaaagcc atctccagtg agtctatgca gacggacccg gggagtatca atacagagga
     1921 cgaggtgctg gctgaaccag atgtcccagg gctttggagc aaagagtcat accagccaca
     1981 ccaggtgccc aaggaggaca tggaacgaaa acctgtgggc ggaagtaaaa tggaaaagga
     2041 tatcctggct cggactatgg agaggctgcg cagtggggtg atccaaaagc aggtggtatc
     2101 tgggcgggag ttcaagggcc gtccattcaa cagcaagcct gaggtcatcc acttcaagga
     2161 ctttgatatt ggcaaagtgt acaaaaagaa aatcacgttg atcaatgcta cttacacaat
     2221 caactattgc aagctggtgg gtgtggagga gaacctgaag gacttcatcc atattgactt
     2281 tgatccccct ggtcccatgt cagctggcat gtcctgtgaa gtccttgtca ccttcaaacc
     2341 tatgataaat aaagatctgg aaggaaatgt ctcatttttg gctcagacgg gcggcttttc
     2401 tgttccactg aagtgttcaa cgaaaaaatg ttctctgtcc ctggacacgg agctcattga
     2461 ctttgggagc tatgtagtgg gtgagaccac atctcggatg atcacactga ctaatgtcgg
     2521 gggcctgggc accaaattca agtttctcct cgattccgag ctctatgaga tggacgattc
     2581 ccagcccatc gtaaaaataa gcagcctctt caactgtgag gacaaaactc tgtatgagaa
     2641 gctcattagc agttactctg agcaacagct cgaagtcaat gagttctcct caatggacct
     2701 cctgagccaa aaagagtcgg agaagcagct ggatgacgca gaggttacca cagctgcggt
     2761 cagtgccatg accatgcctc ccagcgagga gcaggcagag atcacactgg gggaggtaag
     2821 agagggggaa atcggtccct tcagttccat caaagtgccc atcatcttca ctcccattat
     2881 cccaggagaa gtgcaaaaca agttcaaggt cgtgtttaag gatccacaga gtccgacgtt
     2941 atatttcaga gccactggaa ctgccataga tgtgccagtc tgggtgccaa gggccacagt
     3001 ggacctgaag atctgcatgt atgaccgact ctaccaggac tccatcactg tccacacgag
     3061 atcaaaagca gctctgcgcc tgaagtttga agtctgtaag gagctgagag gccacataga
     3121 gctattgcca gaaactggct acatccaggc ccagtccacc tactcagtac agctcaagtt
     3181 cctgcctcga caatccctcc cagaagatgc aaggaagtat ttcgatcctg ccagtcgagt
     3241 tctggaggct ccaatgacaa ttcgggtagc tgaccagatc aaaccagtga ggttcactgt
     3301 ccaggccatc gtcaccacct cagacttgga aatcaacccc tcagagataa actttggcta
     3361 ctgtaccatc tacgaggcta tccggacaga gatccgcctc agcaacctct ccctgctgcc
     3421 ccaggagttt gggttcgttg gacttcccaa gtatatagac atccagccca atgatgggtt
     3481 tgggacgatc ttgccactgg aaactttgcg actcgatttg atcttccagc ccatcaaggc
     3541 cagggaatac aaatttgagt tgatctgcaa atctgagata aaccggtgct tcaagctgtc
     3601 ttgccaagcc ataggtgtcc acccacccct ggagctgtcc cactaccaga tcaagttctc
     3661 agccacatcc ctgtatgaca cctctgtgtc cacactgtat gtgatcaact cccatgtgag
     3721 catgaacaag ctgatccact ccttgcctcg gatcggctca gaggaagcct ccccagtggg
     3781 accaacatcc tttgagttct tgctgcctcc taagtcaccc atcaccatct ccccgtctgt
     3841 ggggaccgtg ttacctggaa agaggtgtct ggtccaggtg gccttccagc ccgtactgcc
     3901 acaggacaaa atcttcgagg aagccattca gctcctgggc aaggaaacag agaccaagac
     3961 gaaggaaaca gggcaaaaga aagaactgtg gaaacaatcc ttgtccatgg tccgggtcca
     4021 caaccgggag cgactgaccc ggacctccac gacccaaagt acagaactgc agaggccgga
     4081 ggtcaatgtc agttccattg agttccaagc tgcacaagcc accctgtcca aggccttcca
     4141 ggggaagttt gagaggtttg tgatcccctg tgttgttgcc agtggtgaca tcaaagacag
     4201 gaagacaacg gaacctctga gcttcagccc ccataatact ctatatctgg agctgtggtg
     4261 tccagcagtg gctccattta ttgtggtgac atcccacaac ggcaagactg tctttaactt
     4321 cggcgatatt gctgtggggc atcgaagcat aaagaagatc accctccaga acatttgcaa
     4381 tgaggacctt actttggggt actcagtgtt gaaccccaac ggccctttcg ttcggctgaa
     4441 ccctttcagc aagctgtgct ctggtgagac acaaacccta gtgctgtcct tctcaccccg
     4501 tgagagcata ctggctcaag aaaccctgga catcatcacc aagagaggca ctctcagcct
     4561 caccctcttg ggcaccggtg tggcatccat gattacatgc tccattgaag gcaacaccct
     4621 caacatgggc tatgtgcttg ccagagaatc tgtctcaaca acttttaagc tacagaatga
     4681 atccttgctt cccattaagt tctgggtgcg cctggagagc ctctccaaaa agaaggctga
     4741 gacctaccag cagctgccaa agttccttac ctcccgtgag cagaggacag aaatagttgg
     4801 cactcagaac tataatggcc agagcgtatt cagtatctcc ccagttgagg gcctcatgtt
     4861 ccctgggaaa gctcaagagt ttaccgtaac cttcagtcca gaccacgaga gcctctactt
     4921 ctctgacctg ctccaagtgg tgctctttga aaagaaagtc tcccaccaga tctttctaaa
     4981 gggtgctgcc cgtgagcaca tgatgtttgt ggagggatca gaccccctgg atgtgcctgt
     5041 ggagtccctg gcagtaatca ctgcctttga cccagagcat aaagaagaag ctgaggagat
     5101 aaaacccatc ctggtgacct tgaactatgt ccagtttgac acagacacga caaccccgcc
     5161 tgccacccga gagctgcaag tgggctgtat ccggaccaca cagccatcac cgaggaagac
     5221 tgtggagttc aacctcgaca gtgtatcatg gcttcagcac aagggcttct ccatcgaacc
     5281 ctccaggggt tttgtggagc gtggccagac taagactatc aacatctcct gggtaccacc
     5341 tgctgacttt gatccagacc acccactcat cgtgtcaagc ctgctgcagc tccgggggga
     5401 cataaaggaa acctacaaag tcatcttcgt agcccacgtg gtcactgagc agtgaggtca
     5461 caggaaacct cagagcctcc tggactctgc tatccactct tgaacccctt cccaggctgt
     5521 gagccaagcc aatccattcc cctaggcctg ggacctgctg ggcaggttca agtgaacagc
     5581 cccagagcca gagctaacag acatagtcag agccagccta cagacatagc taattccttc
     5641 tgccctgtga gcaatctaag accacccccc ccacatacac caagaaatac taatccatcc
     5701 aactcaacgc atgcacgcac gcacgcacac acacagcctg ctcttagatg caacatccca
     5761 acccccagat ctcaaaccca ccagcacctc cccaggcttc agagatccca ggagatctca
     5821 acataggcct ttcaataaac tctgagaacc aac
//
