LOCUS       XM_003749688            4946 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus cilia and flagella associated protein
            69 (Cfap69), transcript variant X1, mRNA.
ACCESSION   XM_003749688
VERSION     XM_003749688.5
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051339.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_003749688.6.
            
            On Jan 21, 2021 this sequence version replaced XM_003749688.4.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4946
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4946
                     /gene="Cfap69"
                     /note="cilia and flagella associated protein 69; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 19 ESTs, 1 long SRA read, 2 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 49 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:100910867"
                     /db_xref="RGD:6496360"
     CDS             202..3027
                     /gene="Cfap69"
                     /codon_start=1
                     /product="cilia- and flagella-associated protein 69
                     isoform X1"
                     /protein_id="XP_003749736.1"
                     /db_xref="GeneID:100910867"
                     /db_xref="RGD:6496360"
                     /translation="MSTAEASAVAADAAEVGGRTKTGSPRTIPVFGVAIPDGEMQDIF
                     KPMDLNRIIKLLEEDDKDVSEEKQLKYIKKLTHCYQNGFPLRDLAQIFKILSLCAEKI
                     EKQPCFVEPASEIIKLCGLPFLKKKVSDEITYTEDTANSFALLGELMKIPSSKLRIQI
                     CKCIVDFYHAEPLKKHISGYQQVSSSFKIKMVEVGGLAKAMVQSALLLENQLVEKLWV
                     LKVLQHLSTSGVNCTLMVKAQAASRICAHLNDPDPSGQLLFRSSEVLWNLLEKSSKEE
                     IIQQLSNLECLLTLKEVFKNLVMRGHSHYERQLRNDILVITTIIAQNPGAPMIECGFT
                     RDLILFATFNEVKSQNPLVKSLKLFNCYEDFELKKLLFNIIVILCKDLTTVQLLIDGK
                     VILALLTYVKKPERLKIIEWSAAQYEELQLHAIATLSSVAPLLIEEYMSCHGNARILA
                     FLEWCGHEDSYFIHGNSFHGTGGRGNKFAQMRYTLRLLRAMVYLEDETVNKDLCERGV
                     IHQLIEIFKTMMSRPAEKEEAIALEIQSDTLLILSGLCENYIQRKEMFGTEGVDIVLH
                     VMKTDPKNLQRGLGYNVLLFSTLDSIWCCILGCYSSEDYFLEKEGIFLLLDILALNQK
                     KFCNLILGIMVEFCDNPKTSAHVNAWRGKKDLTAASLLIKLWRKEEKELGVKRDKNGK
                     IVDTKRPLFTSFQEEQKIVPLPANCPSIAVMDVAENIRAKIYAVLDKLDFENLPGLSA
                     EDFVTLCIIHRYLDFKIGEIWTEVSEEIKLEKLRLVTVDEKSLHSIIAATENIGKMVA
                     SLQSEMIENQALQDVQNEQRVYAKIQATHKQRDQAHKSWENFLARTSNAKTLKKAKRL
                     QEKAIESSRYSKRPQNAIFHQTVIKGLNTTVTSGQVVTVESTPTRLLGGPLADTDIAL
                     KKLPIRGGALQKVKVKPLDGLKKTVPI"
ORIGIN      
        1 gttagcaact ggagcgcgct gggtgccttg gtcattctgg ggacagtaac agctgttgga
       61 tatccgctat gttgctgtgg cgggtgtcac gaccggactt tcagggtctt tctcctccct
      121 agctcagatt gcgcagcgtg ttttctccca gggctcgtgg gctgcggacg cacctaggac
      181 cccaggctcc caccccgagc catgtccacc gcggaggcct ctgccgtggc ggccgacgcc
      241 gccgaggtgg gcggcaggac gaagaccggc agtccccgca caatcccggt gtttggggtg
      301 gcgatcccgg atggggagat gcaggatatt ttcaagccta tggaccttaa tcgtatcatc
      361 aagctcctgg aagaggatga taaggatgtc tcagaagaaa aacaactgaa gtatatcaag
      421 aaactgacac actgttatca gaatggattt cctctaagag atttggcaca gatatttaaa
      481 attctgagtc tgtgtgcaga aaaaatcgaa aagcagccat gttttgtaga gcctgcatct
      541 gaaatcataa aattgtgtgg cttgccattt ttgaaaaaga aagtatcgga tgaaataact
      601 tacactgaag ataccgctaa ctcatttgca cttctgggtg aattaatgaa aataccaagt
      661 tctaaattaa ggatacaaat ctgtaagtgt attgttgact tctatcatgc agaaccacta
      721 aagaaacaca tttcaggcta ccagcaagtt agctcatcat tcaagattaa aatggtagag
      781 gtcggaggat tagcaaaagc aatggtccag tctgcactcc tgcttgagaa tcagcttgtt
      841 gagaaactct gggttcttaa agttctgcag catctctcta cttctggagt taactgcact
      901 ttgatggtga aagcccaagc agccagcaga atctgtgctc acctcaacga cccggatccc
      961 tcaggacagc ttttgtttcg ttcatcagaa gtactgtgga atttattgga aaaatcttca
     1021 aaggaggaaa ttatacagca gctcagtaac ttggaatgcc tgctgacttt gaaggaagta
     1081 tttaaaaatc tggttatgag ggggcatagt cactatgagc gtcagcttag aaatgatata
     1141 ttagttatca ccacaattat agctcagaac cctggagcac caatgattga atgtggcttt
     1201 accagggatt tgattctatt tgcaactttt aatgaagtta aaagtcaaaa tcctttggta
     1261 aaaagtctta agctttttaa ttgctatgaa gattttgaac tgaagaaatt gctattcaat
     1321 ataattgtga tcttgtgtaa agatttaact actgtacagc ttttaatcga tggcaaagtt
     1381 attttggctt tgttgaccta tgtaaaaaag cctgagagac tcaaaattat tgagtggtct
     1441 gcagcacagt atgaagaact acaactgcat gcaattgcca ccttgtcctc agtggctcct
     1501 ttgttaatag aggagtacat gtcatgccac ggcaatgctc ggatccttgc gtttttagaa
     1561 tggtgtgggc atgaggattc ctacttcatt catggcaaca gtttccatgg tacagggggc
     1621 cgtggaaaca agtttgcaca gatgcgttac actttaagac tcctcagagc catggtttat
     1681 cttgaagatg agactgtgaa caaggacctt tgtgaaaggg gggttattca tcaactgata
     1741 gaaatcttta aaactatgat gagcagacct gctgagaagg aagaggccat tgccttagaa
     1801 atccagtctg acacattact tattctgtca ggtctttgtg agaattatat ccagaggaag
     1861 gaaatgttcg gaactgaagg agttgacata gttctccacg taatgaaaac agaccccaag
     1921 aatttacaga ggggcttagg ctacaacgtc cttcttttca gtacattaga cagcatttgg
     1981 tgctgtattt tggggtgtta ttcttctgaa gattattttc ttgaaaagga agggattttt
     2041 ctccttttgg atattctggc attgaaccaa aaaaaattct gtaatctgat tcttggaata
     2101 atggttgaat tttgtgataa tcccaaaact tctgctcatg tcaatgcttg gcgcgggaag
     2161 aaagacctga ctgctgctag tcttttgatt aaactgtgga gaaaagagga aaaagagcta
     2221 ggagtaaaac gtgacaagaa tggcaagatc gttgatacaa agagacctct atttactagt
     2281 tttcaagaag aacaaaagat cgtgcccctt cctgctaact gcccatccat tgcggttatg
     2341 gatgttgctg aaaatatcag agcaaaaatt tatgctgtgt tggataaact agattttgaa
     2401 aacttaccag gcttatctgc tgaagatttt gtcaccctct gtataataca tagatatctt
     2461 gattttaaaa ttggagaaat atggactgaa gtgtctgaag aaataaagtt ggaaaagtta
     2521 agactagtca ctgtagatga aaaatccttg cactctatta tagcagcaac agagaatatt
     2581 ggaaagatgg ttgcttcctt gcaaagtgag atgatcgaaa accaagcact ccaggatgtg
     2641 caaaatgaac aaagagtata tgcaaaaata caagctacac ataagcagag agatcaggct
     2701 cacaagtcat gggaaaactt cttggctaga acatcaaatg ctaaaacatt aaagaaagca
     2761 aagagacttc aagaaaaggc catagaatcc tccagataca gcaaacgacc acaaaatgca
     2821 atattccacc aaacagttat taaaggcctt aacacaacgg taacttcggg ccaggtggtg
     2881 acagtggaaa gcactcctac tcgattgctg ggaggacctc tggctgacac agacattgct
     2941 cttaaaaaac tgcctattcg aggaggagcc ttgcagaagg tgaaagtgaa gccgctggat
     3001 ggccttaaaa agaccgtccc gatctgatgt gttccactgc tgctgaaata aattctacat
     3061 ggagcttttt agctaaatgt atatttatat acaaatgcaa ggcaaaacat ttagaataaa
     3121 tattgtagtg aaatataaaa attaaagtta ggataatata ctttttaata gaaaacagca
     3181 ctatttgaaa agattatcag tcccttaact gaaattgtaa atgtgttaac aatttggact
     3241 tttggctcta catcaattgc tccaaatact ttaccctaag ggacatttct gtgggctttg
     3301 catctcccat catgagtagt ttagactgtg gcaactgttg gctcaagggg ctgaaactgg
     3361 attaggaggg atctccttcc agcaacccta ccttatattt atccagtgga aaagtgtggg
     3421 catatttttc tcagtaactg gtgtcgcccc ctctatgtgt tggagccttg cttggccagg
     3481 cccacatgcc tactctagag caccttacct cagagccagc gagatctgaa tactccttgc
     3541 tcttggagcc ataaacagtc caacatcatc taaaatacct taatggaatc aggaatcaag
     3601 gtgctattat cagaaggatc tacgaatacc aaagcaatac atatgttggt gaaagcattc
     3661 tattagtaaa ggcaatggcc agtcacaagc taaaaataaa aacaagcata tacacagttt
     3721 tactctaaac atataatttt tcaaagtgca gctagagaga tagatcttta aatgcactgg
     3781 ctgttcttcc agaggcacca acataacagt tcacaacctt ataattccag tcccagagga
     3841 tgtgaccttt cttctggccc cctcaagcac cagacactca catggtgcac agacatatgt
     3901 gcaagcaaaa ctcccataga catagaagag ataaaatttt aaattcagta aatacaagtt
     3961 tgaaactaat tctcatgcta tttctccgat gggaaagggg caggtagtat gtgggtaagc
     4021 agatagaaga atgcaacatg tccatacaaa tggtaccaaa taatgtcaca ttaaaatctc
     4081 agacacccag aatcctttgc tgtgtccaca gctaagagca atgaatctta tagactatga
     4141 gctttgtcag actcgtagtt ccgcgaaggc aaggaaagaa cgtgtctaat ttaccatttg
     4201 accagcacct cagtaacgaa gttagtgatg aaggctttgt ctctggcagc gtttcccttg
     4261 acatcttaaa tgcagcaatg ccctgacctc aaaggaaaga ctcagcccac aagatgtact
     4321 gcacaagtga tgctaagcag ggagagcatg ctaaagtagt tcaaatacgt gtgcttcaaa
     4381 gccgccatgg gttttgatca agttacaagg tataaatgaa aacattatag aaaaattgtt
     4441 gtgatttggt tgaggatcag ttttacatat aggtcctatc tccaaattga tttaaactga
     4501 tccccgtcag cgccatctga ggtctacaga ctgttctgct acccagtagg aagagagaag
     4561 acaaaataag acaggttatt ttctagcagg tatttactac atggagaagt ataggctggt
     4621 ggaaagcagc aatagtgctc aaagcagaaa ctctacgcac agtagacgga tctctagcaa
     4681 gcttgtttct ctgatacagt tccggccgtc acacagcgag ccagggaggc taccactctg
     4741 acagcagcac aaacttcccg gcttttcttc ctccctctat cctataactg ctcctcgtga
     4801 gtccaagtgg atatggcatc cgagtggccc tgcctgggca atggacagtc tattttcttc
     4861 tatgagtcag ctgagacaaa cttgcaagcc ttaaaactga gatatgtact aatcagataa
     4921 ataaaacttg tattttgaaa tcagaa
//
