LOCUS       XM_039084645            5903 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus cilia and flagella associated protein
            65 (Cfap65), transcript variant X1, mRNA.
ACCESSION   XM_039084645
VERSION     XM_039084645.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051344.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039084645.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5903
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5903
                     /gene="Cfap65"
                     /note="cilia and flagella associated protein 65; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 3 ESTs, 3 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 4 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:301521"
     CDS             292..5844
                     /gene="Cfap65"
                     /codon_start=1
                     /product="cilia- and flagella-associated protein 65
                     isoform X1"
                     /protein_id="XP_038940573.1"
                     /db_xref="GeneID:301521"
                     /translation="MRTRDSGDCTVNTMNDDSCLSASTLGSSSVTTQLIDPLSRKLCV
                     VRKQQDMKKRVIWGIEVPEELHWKGWELGKETTRTLILKNLSLKTQKLKYRPPKTKFF
                     FTMIPQPIFLSPGIALTLPIVFRPLEAKEYTDQLWFEKEEGVFCVALKASLPCYKLVC
                     PPSLQLPMCAIGDTVETWFCLSNVGDLPTFFTWEVPVPFQILPTTGLLEPGLGCKIKV
                     TFEPLIAVIHEVEALCWYGKSGKQKNSIHIQAAAKCAQLLVSIRHKQLEDQDPEGFQK
                     VIHFGYVSVGCVAERQIRLYNPSAVNAPFKIEMAEDMLAKDQSFSCPTSQGIVPPGEK
                     KCVSLFFHPKTLDSKAIDYFSIVPSGCATQTLLQVVGFCRGPDIALQHCCVNFNWVKL
                     GEHPEQTLWIENRSNCPAHFQFDIDCQDSVFSIRPAFGTLAGKTRMTLHCAYQPTHPI
                     ICFRRVACLIHHQDPLFLDLIGTCHSESTKPAILRPQHLTWYRTHLARGLTLYPPDIL
                     AAMLKEKKLERDENGALMLPIEVCESLPMQDLEDLTAQTYPNIPPMMEYFFDGTRDLA
                     IFPPAVSLEPIDVDFGACPGPEAPNPVPLCLRNYTKGKITVVWTHRSDCPFWVTPVTS
                     DVPPLKSVALRLHFQPPSPNCLYAVELEAFAIYKVLQCYSNIEEDCTVVPSWCLKVRA
                     RGHSYYPSLEHHIPQYSLDAPQTFPAVSSGKPSYRSLFLVNKGSMMLTFSLAPNSSPD
                     ITLKPSSGLIAPGAHQIFLISTYPKGTSWKQHVFYLKFNFYPQYLKEVSIQSREEPLE
                     LKLDTCKSIFFKPTWVGCSSTSNFTFHNPSRLPLEFEWRVSQQHQKMLAVRPSKGIIH
                     PNENLTLTWIFSPLEEIKYLFRVGIWVWEARQPQKTKPQPTVHYRIRLVGMGVTGCLS
                     AKPKDLDFGNVLVNSQEVKSLVLLNDGNCTLYYRLVLEQHRPKGLNNDSCALEFDHSE
                     GTMPPHSQDTIYLTACPKIRSKYSWTISYCLLNQRVTPPDSPDCKTQELCHVSLAAVY
                     PLLSVLDISSMGSAEGLTRKHLWHLFSLDTLNSYLARDPTITELTYKVPTRHSVSHTP
                     PIFTPLKLDFNFGAAPHNAPPSVVLLILKNRGLVPLDWSFLFPSDQQLDMDVWTEQAD
                     LNSTELHQMRAEDNCLFSINPKTGSLTPGQEQMVEFKYRHLFVGTDRLSVLFKVSHGR
                     EILLHFIGVTVRLEQKYVHFTSTIHQFIPVPIGETLPPRQIYELYNGGSVPVTYEVQV
                     SVLSQVQEKNFDHPIFCCLNPKGEIQPGTTTRILWIFSPIEAKTYTVEVPIHIIGWNS
                     AVICFQGVGYDPYIMGDTAPFHSISDSSSTYSRLMVPGQNVFLSQSHISLGNIPVQSK
                     CSRLLFLNNVSKNETIVFTWQPTPLDFGEVTVSPMEGQVPPEEGAPILVTLKASVHAS
                     FYSIDLVCKVYQQELMQQYHKDLREWNEEKARQEVEFTITDLKVKRRAHCAAHEPPKK
                     YKTLPPITNQPPLGRPATWNLKIGKEETWPCPQPPVPGLLCLGLTARAHAIDYYLANF
                     FSEFPCHFLHRISMVYPRELPKKKSFKEESKAFEEEPPDTEGPVSRQKKQLLVDCLTA
                     IIRGLLEDKNFHDAVDQSLVEQVPYFCQFWNEQSARFLAQKSSLFLVPILSLPSSFEV
                     GKSKEPEEDLYGKMAAGQEDGEEEEEEEEEAEEEEEAEEEEEEMEELSKEEEDVDKEP
                     KTTWSGMKATDTSQQSLQWQWQQDLKAIIKEETENDEKEAIGRLPAFANLQEAILENM
                     IQNILVEASRGEVVLTSRPRIIALPPVSMNRADTLLQMSQGEVLCSGIQHPDCLLVSA
                     SSPSYMTA"
ORIGIN      
        1 gctgtgtccc gcgcgtcccg tatctatgga gacgtcagca tggcgtttgc ataagttctg
       61 aacgttggag cccagcgaga ggaacaagtg tcaaggaagg ctcctgtctt gaattcctgc
      121 cctgactttc ctgagagttg taagataaga ttaacccttt gctcttccaa gttgcttttg
      181 gtcctagtgt ctattacagc aacagaaagc accagctcca gactcctatg aggatctggt
      241 aagaatttct ggcttggcta gattctcacc tacacaaacc aaggccacac catgaggacc
      301 agggacagcg gagactgtac tgtgaacact atgaatgatg actcgtgcct gagtgccagc
      361 acactgggaa gtagcagtgt cactacccag cttatagatc ccctgtccag gaaattatgc
      421 gtcgtgagga agcagcagga tatgaagaag agggtgatct ggggcattga ggtccctgag
      481 gagctgcact ggaaaggctg ggaactgggg aaggagacca caaggaccct gattctgaaa
      541 aatctctccc tcaaaaccca gaagttaaag tacaggcctc ccaagaccaa gttcttcttc
      601 actatgatcc cacagcctat cttcctgagc ccaggcatag cactcacact ccccattgtc
      661 ttccgacctc tagaagcgaa ggaatacacg gaccagttgt ggtttgaaaa agaagagggg
      721 gtattctgtg tggccttgaa ggccagcttg ccttgctaca agctagtctg tccgccatct
      781 ctgcaactgc ccatgtgcgc cattggggac acagtggaga cttggttctg tctgagcaat
      841 gtgggggacc tgcccacctt cttcacctgg gaagtcccag tcccattcca gatacttccc
      901 actacggggt tactggagcc aggcctgggt tgtaagatca aagtgacctt tgagcccctc
      961 atagctgtca tccatgaagt cgaggccttg tgctggtacg gaaagagtgg caaacagaag
     1021 aacagcatcc acatacaggc tgcagctaaa tgtgcacagc tgctggtgag cataaggcac
     1081 aagcagctag aggaccagga tccagaaggc ttccagaagg tgatacactt cggctatgtc
     1141 tccgtgggct gcgtcgcaga gcggcaaatc agactgtata atccatcagc ggttaacgcc
     1201 cccttcaaga ttgaaatggc tgaagatatg ctggccaaag accaaagctt ctcatgtccc
     1261 actagccaag gcattgtgcc cccaggggag aagaaatgtg tgtcactgtt ctttcacccc
     1321 aagaccctgg acagcaaagc catagactac ttctccatcg tgccttctgg ctgtgccacc
     1381 caaactctgc tccaggttgt tggtttctgt agaggtcctg atatagcact gcaacattgc
     1441 tgtgtcaact tcaactgggt gaagctcggg gagcacccgg agcagactct gtggattgag
     1501 aaccggtcca actgcccggc tcacttccag tttgacattg actgccagga cagtgtcttc
     1561 agcatcaggc ccgcctttgg aaccctggca ggcaagaccc gtatgaccct gcactgtgcc
     1621 taccagccca ctcaccccat catctgtttc cggagggtgg cctgtctcat ccaccaccag
     1681 gacccactat ttctggacct gattgggacc tgccattcag agagcaccaa gccagccatc
     1741 ctgaggcctc agcacctcac ctggtaccga acacacctgg cgcggggcct aaccctctac
     1801 cctcctgaca tcttggctgc catgctaaag gagaaaaagc tggaacggga tgagaatggg
     1861 gccctcatgt tgcccattga ggtatgtgag tctctcccta tgcaggatct ggaggatttg
     1921 actgcccaaa cgtaccccaa tatcccccct atgatggagt acttttttga cggcaccagg
     1981 gacctggcca tctttccccc agctgtcagt ctagaaccta ttgatgtgga ctttggtgcc
     2041 tgccctgggc ctgaggcccc caaccctgtt cctttgtgcc tgaggaacta taccaagggc
     2101 aagatcaccg tggtctggac tcacagatct gactgccctt tctgggtgac cccagtcact
     2161 agtgacgtgc ccccactcaa gtctgtagcc ctgcgtctgc atttccagcc gccctccccc
     2221 aactgcctct acgctgtgga actagaagcc ttcgccattt ataaggtcct tcagtgctac
     2281 agcaatattg aagaggactg cacagtggtc ccatcctggt gtctgaaggt tcgggctcga
     2341 ggccacagct attacccttc cttagagcac catatccccc aatattctct ggatgcaccc
     2401 cagacattcc cagcagtatc ttctggaaaa ccctcctaca gaagtctgtt tttggtcaac
     2461 aaaggctcca tgatgttgac cttcagcctg gcccccaata gcagcccaga catcaccctg
     2521 aagccctcct ctgggctcat tgctccggga gcccaccaga tcttccttat cagcacatat
     2581 cccaagggca cctcgtggaa acagcatgtc ttctacctga aattcaactt ttatccccag
     2641 tatctcaagg aagtgagcat tcagagccga gaggaaccac tggagctgaa gctggatacc
     2701 tgcaaaagca tcttcttcaa gcccacctgg gtgggctgtt cctccaccag caactttact
     2761 tttcacaacc cctcacgcct gcccctggag ttcgagtgga gagtctccca gcagcaccaa
     2821 aagatgctgg ctgtccggcc ctccaagggt atcatccacc ctaatgagaa cctcacactg
     2881 acgtggatct tcagcccttt ggaggagatc aagtacctgt tccgagtggg gatatgggtc
     2941 tgggaagcca gacaaccaca aaagaccaag ccccaaccca cggtgcatta caggatccgg
     3001 ctggtgggca tgggtgttac tggatgcctc tctgcgaagc cgaaggacct ggactttggg
     3061 aacgtactgg tgaacagcca ggaggtcaag tctctggttc ttctgaatga tggcaactgc
     3121 accctctatt accgcctggt cctggagcag cacaggccca agggcctcaa caatgactcc
     3181 tgtgctctag aatttgacca ctcggaaggg accatgccac ctcattccca ggacaccatc
     3241 tatctgactg cctgtcctaa aatccgttct aagtattcct ggaccattag ctactgtctt
     3301 ctgaaccaaa gagtcactcc cccagacagc ccggactgca agacacagga gctgtgccat
     3361 gtgtccctgg cagctgtgta cccactgctc tccgtcctgg acatctcctc catgggcagt
     3421 gccgagggcc tcacgcgcaa gcacctgtgg cacctcttct ccctggacac gctcaacagc
     3481 tacttggcac gtgacccaac catcacggag ctcacctaca aggtgcccac ccggcacagc
     3541 gtgagccaca caccccccat cttcactcct ctgaagctgg acttcaattt tggagcagca
     3601 ccacacaacg ccccaccgtc ggtggtactc ctcatcctga agaaccgtgg gctagtcccc
     3661 ttggactggt ctttcctctt tccaagtgac cagcagttgg acatggatgt gtggacagag
     3721 caagcagacc tcaacagcac tgagctccac caaatgcgtg cagaggataa ttgtctcttc
     3781 tccatcaacc ccaagactgg gagcctgacc cctgggcagg agcagatggt ggagttcaaa
     3841 tacagacacc tgtttgttgg caccgatcgc ctctctgtgc tcttcaaggt gtcccacgga
     3901 cgggagatct tgctacactt catcggcgtg acagtgaggc tagagcagaa gtatgtgcac
     3961 ttcacctcca ccatccacca gttcattcct gtccccattg gcgaaacatt gcccccacgc
     4021 cagatttacg agttatacaa cggtggctca gtgcctgtga catacgaggt gcaggtcagc
     4081 gttctgtcac aggtacaaga aaaaaatttt gaccacccta ttttctgctg cctgaacccc
     4141 aaaggggaga tccagccagg cactactact cggatcctgt ggatcttctc acccatcgag
     4201 gccaagacct acacagtgga ggtacccata cacatcattg gatggaactc agctgtcatc
     4261 tgcttccagg gagtgggata cgacccttac atcatgggcg acaccgcccc tttccacagc
     4321 atctcggaca gtagttccac atactctcgg ctgatggtcc ctgggcagaa tgtcttcctg
     4381 tctcagtctc acatctccct gggaaacatc cctgtgcaga gcaagtgtag ccgcttgcta
     4441 tttctgaaca atgtctccaa gaacgagaca attgtcttca cctggcagcc aactccctta
     4501 gactttggag aggtaactgt gagtcccatg gaaggacaag tgcctcctga agagggagcc
     4561 ccaatcctag tgactctgaa ggcctcggtc catgccagtt tctacagcat agacctggtc
     4621 tgcaaggtgt accagcagga gctcatgcag cagtatcaca aggacctgag ggaatggaat
     4681 gaggagaagg ctcggcagga ggtggagttc accatcacag atctgaaagt aaagaggaga
     4741 gcacactgtg cagcccatga acccccaaag aagtacaaga cactgcctcc catcacaaac
     4801 caaccgcctc tcggccgacc tgccacctgg aacctgaaga tcggaaagga ggagacatgg
     4861 ccatgtcctc aaccacctgt gccaggcctg ctctgtctag gcctcactgc gagggcccat
     4921 gccatcgact actatctggc caacttcttc tccgagtttc cctgccactt tcttcaccgg
     4981 atatcaatgg tctaccccag ggagctgcca aagaagaaat ccttcaagga agagtcaaaa
     5041 gcttttgagg aagaaccccc tgacacagag ggtcctgtct ctaggcagaa aaagcagctt
     5101 ctggttgact gtcttaccgc catcatcagg ggcctactgg aagacaagaa tttccatgat
     5161 gctgtggacc aaagcctggt ggagcaggtg ccttacttct gccagttctg gaatgagcag
     5221 tcagccaggt tcctcgccca gaagagcagc ctgttcctag tcccgatcct atccctgccc
     5281 tccagctttg aggttgggaa aagcaaagag ccggaggagg acctttatgg gaagatggca
     5341 gcagggcaag aggatggtga agaggaagag gaggaggaag aggaggcaga ggaggaagag
     5401 gaggcagagg aggaagagga ggaaatggaa gagttgagca aggaggaaga ggacgtagac
     5461 aaggaaccga agacgacctg gtcggggatg aaggccacag acacatccca gcagtcgctg
     5521 cagtggcagt ggcaacagga cctgaaagcc ataataaagg aggagacaga aaacgatgag
     5581 aaagaagcca ttgggaggct accagctttt gccaacctgc aggaagcaat actggagaac
     5641 atgatccaga acatactggt agaggcaagc cgtggagagg tggtgctcac ctcgaggccc
     5701 cgcatcattg ccctaccacc agtcagcatg aacagggcag atacgctgct gcagatgtca
     5761 caaggggaag ttctctgctc tgggatacag catcctgact gtttgctggt gtcagcatcc
     5821 agcccctctt acatgactgc ctagatttgc ccctggtccc tttttactgt tctgcaagta
     5881 aaccgtttag ttctacaccc taa
//
