LOCUS       XM_008762286            4048 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus cilia and flagella associated protein
            61 (Cfap61), transcript variant X1, mRNA.
ACCESSION   XM_008762286
VERSION     XM_008762286.3
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086021) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On May 14, 2024 this sequence was replaced by
            NM_001430465.1.
            
            On Jan 21, 2021 this sequence version replaced XM_008762286.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4048
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..4048
                     /gene="Cfap61"
                     /note="cilia and flagella associated protein 61; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 ESTs, 49 long SRA reads, 4 Proteins"
                     /db_xref="GeneID:311496"
                     /db_xref="RGD:1311519"
     CDS             94..3801
                     /gene="Cfap61"
                     /codon_start=1
                     /product="cilia- and flagella-associated protein 61
                     isoform X1"
                     /protein_id="XP_008760508.2"
                     /db_xref="GeneID:311496"
                     /db_xref="RGD:1311519"
                     /translation="MSILTSPRGKVEVVHCRRTESQDIFCIKTLIRKFTQKLFGRLNI
                     IYLLEKANLAVTVCNDKEEIMAHSIFVDYPNWNVAKQDNWIPVFRELDKEIPCTPLNT
                     LFMHFFVAVDEYATGCLKEIIRTVFKAVPELYFIFLIVPTYLSLGSTLITVFDQVGNI
                     PCMNYDEEFAVHICHRHDHYPQLHIRKARVEDHDDLMPIFMHYDSTLKEIYGEYFLAE
                     LIEAQDEDNHAVVCEVEGKAVGFMSVCASVNLPLLHECFDLGPFHGFCFPHPDDLLEP
                     PKEPSLEESEDTGNKSDSQGSQRVVEEPVSIDTSEMIQEKDTETSISCEEVLSLLSKV
                     SEDMQDLEKNLSIISLVDEDDFGSLSSLSSSLLLSVESSHFRPLYLGESAAFCIQLFC
                     IDERYEARSLDFMSFVFSLFPNKNFCLISVPHLTPEFVLIQNFVKVVPFSNCTLDNDL
                     YVFHRAGLLRSITIRLAKFLDTPGVEKLVRTLLLSTKILSDLAQYNEAGRDPDGTELQ
                     VFVAEVANQIVGIAVIRKEMDIEYIRSHYNIEDFIYFSHHQQEEHGRLNHFALNPIFR
                     HYTKFFLKEILRLGYKSCLYYPVYSQTREGKLQSSYAHSLTSALHYLVPVRPRRQIVY
                     PLEKLGINAPSKEVSKDQASYALNHTNRKLTLEPKVTVNARIVVVGASSVGISFLETL
                     VFCSHLKFNNLTLISTHGLPGKKLLSNEQRKFLASDHCFNDKDYVLMSLCSWVNVVVG
                     RMTAIDRVAKQVVVSKDEIVFYDHLILCTGQQYQVPCPTGADIEQHLTNREVMQLSKR
                     RYTGTVPSNLFILNDEEDCVRALFWLRNNSTLTEGKVIVYGNTLDAYTTVETLLHIGM
                     EGNCIYFVHPPAESNTTYINNYDIESAVDEALSAAGVKVYQDALLAQWNQGQDPDPIQ
                     NACFTTSTKPFRLECSAFFSFYKKNVDYETFKAFNDACLVYDGRLVIDTTFHTNDIAI
                     RAAGPLTKFSNRYYSNEWTHSNFSSKEIGFQLAAAMLSLFDPTLEPVTEPPADLDRLI
                     PMYKGAKIQGGILPGSYHYLHISKPAIPTPLDVQRSQPDFGSEIVTGNAKKGTYFRLY
                     FNNYKLVEAITCFSKEPFPTSNYIRLFGQHEQVLNNLCTRFDEKLIPDLYSYFTEPWC
                     MALFHDRFIDLKKELRQIITSKQEEDQPTMEQIARQLEEEEINLNEKPQKYLQKVFED
                     SIYKSLLEKSILDYLHYNQYHLPMYAWPGII"
     polyA_site      4048
                     /gene="Cfap61"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 tcaggggaaa cgccgcgtcg tttccgtagc aaccgtgtgc gcgtcctcag aggagcagcg
       61 ccgcttgctg ggactgcggg tgaggagaga aaaatgtcta tccttacttc tcccagaggg
      121 aaggttgagg tggtacattg ccgaagaaca gaatcccagg acatcttctg tatcaaaact
      181 ctcatcagaa aatttactca gaagctgttt gggaggctca acatcatcta tctgctagaa
      241 aaggcaaacc tcgctgttac cgtctgcaat gacaaggagg agatcatggc ccactccatc
      301 ttcgtggact atcctaactg gaatgttgcc aagcaggaca actggatccc agtgttcagg
      361 gaacttgaca aagaaattcc atgcacacct ctgaatacac tgtttatgca cttctttgtg
      421 gctgtggacg agtatgccac tggctgcctc aaggagatca tccggactgt gttcaaggca
      481 gtaccagaac tgtacttcat attccttata gtgccaacat atctgagtct aggctcaact
      541 ctgataactg tgtttgacca agtggggaac attccatgta tgaactatga cgaagagttt
      601 gccgtgcaca tatgtcacag gcacgaccac taccctcagc tgcacattcg caaagccagg
      661 gtagaagacc atgatgatct gatgccaata tttatgcact atgacagcac tctgaaggaa
      721 atttacggcg aatacttctt ggccgaacta atcgaggccc aagatgaaga caatcatgct
      781 gtggtgtgtg aggtggaagg caaggctgtt gggttcatga gcgtgtgcgc cagtgtgaac
      841 ttgcccctgc tacacgaatg ctttgacctg ggccctttcc atggattctg cttcccacat
      901 cctgacgatc ttctggaacc accaaaagaa ccaagtcttg aagaaagcga agacactgga
      961 aacaagagtg acagtcaagg ttctcagaga gtagtcgagg agccagtttc catagacacg
     1021 tcagagatga tccaggagaa agacaccgaa acatcaattt catgtgagga agtcctgtca
     1081 ctcttaagta aggtctctga ggatatgcag gacttggaaa agaacctaag cataatttcc
     1141 ttagtggacg aggatgactt tggtagtctg agcagtctga gctcctccct cctgctctcg
     1201 gtggaatcct cccacttccg ccccctctac ctgggagaat ctgctgcatt ttgcattcag
     1261 ctcttttgta ttgatgagag atacgaggca aggtcactgg attttatgag ttttgttttc
     1321 agtctttttc ctaataagaa cttctgcctg atatccgtgc cccatctcac acctgagttt
     1381 gtcctcatcc agaactttgt gaaggttgtc ccattcagca attgcaccct ggacaacgat
     1441 ctctatgtgt tccatcgagc tgggctgctc aggtccatta cgataagatt agccaagttt
     1501 ctggatactc ctggtgttga aaagcttgtc agaaccctct tgctcagtac aaagatactg
     1561 agtgacttag cccagtacaa cgaggctggc agagaccctg atggaacaga actgcaggtg
     1621 ttcgtagcag aagttgcgaa tcaaatagtt ggcattgcag tgatcagaaa agaaatggat
     1681 atagagtaca tacgatcaca ttataacatt gaagatttca tctacttcag ccaccaccag
     1741 caggaagagc atgggcgctt gaatcatttt gccctgaacc ctattttccg acactacacc
     1801 aagtttttcc taaaggagat ccttcgcttg ggttataagt catgtctcta ttaccctgtg
     1861 tactcacaga ctcgggaagg caagctccag agctcttacg cccactccct gacatctgcc
     1921 cttcattact tggttcccgt gcgaccacga cgacagattg tctatcctct ggaaaagctt
     1981 ggcataaacg ctccatcaaa ggaggtctcc aaggatcagg cgagttacgc cttgaaccac
     2041 accaacagaa aactaacgtt agagccgaag gtcactgtca acgccagaat tgttgtggtt
     2101 ggcgcatcca gcgtcggaat ttcattccta gagactttgg tgttttgctc tcacctgaaa
     2161 tttaataatc tcaccctgat ttcaactcat ggactcccag gaaaaaaact tttgagcaac
     2221 gaacagagaa agtttctagc aagcgaccac tgctttaatg ataaagatta tgtgctgatg
     2281 tcactgtgct cctgggttaa cgtcgtggtt ggtagaatga cggccataga ccgagttgcc
     2341 aagcaggttg tggtttccaa ggatgagatc gtgttctacg accacctcat tctctgcacg
     2401 gggcagcagt accaggttcc gtgccccaca ggggctgaca ttgagcagca cctgacgaac
     2461 agagaggtta tgcaacttag caagcgtcgt tacactggga cagttccttc caaccttttc
     2521 atcctcaacg acgaggaaga ctgtgttagg gcgctctttt ggctgagaaa caactccacc
     2581 ctcacagaag ggaaggtcat tgtctacggg aatacactgg acgcttacac aaccgtggag
     2641 accctcctgc acatcggcat ggaggggaac tgcatctact ttgtgcaccc cccagctgag
     2701 tcaaacacaa cctacatcaa caactatgat atagagagtg cggtggacga ggcgcttagt
     2761 gccgctggag tgaaagtcta tcaggacgca ctgttggctc agtggaacca aggccaggac
     2821 ccagatccca tccagaacgc ctgcttcacc acctccacca agcctttcag actggagtgc
     2881 tcagccttct tcagcttcta caagaagaat gtggattacg aaacatttaa agcatttaat
     2941 gacgcatgcc tcgtctatga tggccgactt gtgattgata cgaccttcca caccaacgac
     3001 atagccatcc gagctgctgg ccccctcact aaattctcca accgatatta ctcaaacgag
     3061 tggactcaca gcaatttcag ttccaaagaa attggctttc agctggctgc agctatgctc
     3121 agtctctttg acccaaccct tgagcctgtg actgaaccac cggctgacct tgaccgcctc
     3181 atccccatgt acaagggagc caagatccag ggagggattc ttcctgggtc ctatcactac
     3241 ctacacattt ccaaacccgc catcccaact cccttggatg tacaaaggtc acagcctgat
     3301 tttggctcag aaatagtgac tggcaacgcg aaaaagggga catacttccg actatacttc
     3361 aacaactata agttggtaga ggccatcaca tgcttttcaa aggagccttt cccaacttcc
     3421 aactatatcc gcttgtttgg acaacacgag caggtcctca acaacctgtg tactcgattt
     3481 gatgagaaac tgatcccgga tctctacagc tacttcacgg agccgtggtg catggccctc
     3541 ttccacgatc gttttattga tctcaagaaa gagttgcgcc aaatcataac ctccaagcag
     3601 gaggaagacc agcctaccat ggagcagata gcccgccagt tagaggaaga ggaaataaac
     3661 ctgaatgaga agccccagaa atacctccag aaggtttttg aggattccat ctacaaaagt
     3721 ctgctggaga agagcatcct agattatctt cattacaacc agtaccacct gcccatgtac
     3781 gcgtggccag gcatcattta gctgtagcca gccccccacc ccgggcgtca cttccactct
     3841 gtcagccaag ggctccatag gcagaacccc ccaaccccca accccaccac cccgatcaca
     3901 tgcacttcct tcctcctgtg ttttcccggt tttccagcag gtggcgctcg gctgtgtggc
     3961 actgggaagt ccgggaactt tccaaacaca ggcatgttct gagcagaata atccactcta
     4021 gcaataaaat gacctcttct tgctttta
//
