LOCUS       NM_001420090            3403 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus cilia and flagella associated protein 58
            (Cfap58), mRNA.
ACCESSION   NM_001420090 XM_006231594
VERSION     NM_001420090.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3403)
  AUTHORS   Pieragostino,D., Agnifili,L., Fasanella,V., D'Aguanno,S.,
            Mastropasqua,R., Di Ilio,C., Sacchetta,P., Urbani,A. and Del
            Boccio,P.
  TITLE     Shotgun proteomics reveals specific modulated protein patterns in
            tears of patients with primary open angle glaucoma naive to therapy
  JOURNAL   Mol Biosyst 9 (6), 1108-1116 (2013)
   PUBMED   23580065
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On Apr 25, 2023 this sequence version replaced XM_006231594.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360194.1161156.1,
                                           SRR22582419.2878928.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-179               JAXUCZ010000001.1  256743971-256744149
            180-461             JAXUCZ010000001.1  256747517-256747798
            462-610             JAXUCZ010000001.1  256750529-256750677
            611-767             JAXUCZ010000001.1  256754279-256754435
            768-962             JAXUCZ010000001.1  256755374-256755568
            963-1100            JAXUCZ010000001.1  256758259-256758396
            1101-1260           JAXUCZ010000001.1  256761130-256761289
            1261-1343           JAXUCZ010000001.1  256762919-256763001
            1344-1535           JAXUCZ010000001.1  256768927-256769118
            1536-1697           JAXUCZ010000001.1  256780819-256780980
            1698-1844           JAXUCZ010000001.1  256781803-256781949
            1845-1985           JAXUCZ010000001.1  256788622-256788762
            1986-2209           JAXUCZ010000001.1  256789639-256789862
            2210-2321           JAXUCZ010000001.1  256792605-256792716
            2322-2426           JAXUCZ010000001.1  256794625-256794729
            2427-2546           JAXUCZ010000001.1  256844598-256844717
            2547-2680           JAXUCZ010000001.1  256846885-256847018
            2681-3403           JAXUCZ010000001.1  256851911-256852633
FEATURES             Location/Qualifiers
     source          1..3403
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q54-q55"
     gene            1..3403
                     /gene="Cfap58"
                     /gene_synonym="Ccdc147; Cfap58l1; RGD1307961"
                     /note="cilia and flagella associated protein 58"
                     /db_xref="GeneID:102553148"
                     /db_xref="RGD:7656374"
     exon            1..179
                     /gene="Cfap58"
                     /gene_synonym="Ccdc147; Cfap58l1; RGD1307961"
                     /inference="alignment:Splign:2.1.0"
     CDS             171..2792
                     /gene="Cfap58"
                     /gene_synonym="Ccdc147; Cfap58l1; RGD1307961"
                     /note="coiled-coil domain-containing protein 147-like;
                     coiled-coil domain containing 147; cilia and flagella
                     associated protein 58-like 1"
                     /codon_start=1
                     /product="cilia- and flagella-associated protein 58"
                     /protein_id="NP_001407019.1"
                     /db_xref="GeneID:102553148"
                     /db_xref="RGD:7656374"
                     /translation="MSEEKPDKIAPEETAFEEIEKDFQEVLSELSGDKSLEKFRVEYE
                     KLHTIMKKSYENEKRLMAKCRELNAEIVVNSAKVATALKLSQDDQTTIASLKKEIEKA
                     WKMVDSAYDKEQKAKETILALKEEIVNLTKLIEQGSGLSMDQDSNIRDLLKFKEEVTR
                     ERDQLLTEVVKLRENLAQITEKQQAAERAKEEAEHAISQFQQEIQHRQNEASRESRKK
                     EKLEKELKQIQLDMDGRQSEIKAMQQYMHKSKEELQRLEQQLKEQKILNERAAKEVEQ
                     FQLRNMKLQQENEQHTLTCEQLSQENQQKALELKAKEDEIHQMRLDLGKLNKIREQIH
                     KKLRLIDDQKIEVEQQKETLKNQILGLEREVESSKKQAELDKKAMEELLRERDILNKN
                     MLKAVSATQKQVDLVKLHEQAKRNLEEEIQNYKDEAQKQRKIIFQLEKERDRYINEAS
                     DLTQRVLANMEDIKVREIQIFDYRKKIAESETKLKQQQNLYEAVRSDRNLYSKNLVEA
                     QDEITEMKRKLKIMTHQVDQLKEEISAKEAALVKLHLEQQRIEKEKETLKAELQKLRQ
                     QALETKHFIEKQEVEERKLLRIIAEADGERLRQKKELDQVISERDILGSQLVRRNDEL
                     ALLYEKIKIQQSVLNKGETQYNQRVEDMRILKLEIKKLRREKGILARSVANVEELRQE
                     LYHMQREFLKERTRCRALEEELENPMNVHRWRKLEASDPSTFELIQKIHTLQKRLISK
                     TEEVVEKELLLQEKEKLYVELKHILARQPGPEAAEQLQIYRYTLREKTKQLKVLSSEL
                     NMYESQSQEYKYEIERLSNELVTLKKKYLAQKRKELVQKNKDRISINNIFSDPKQSVP
                     RFTGGGFPLNQPHKVKL"
     exon            180..461
                     /gene="Cfap58"
                     /gene_synonym="Ccdc147; Cfap58l1; RGD1307961"
                     /inference="alignment:Splign:2.1.0"
     exon            462..610
                     /gene="Cfap58"
                     /gene_synonym="Ccdc147; Cfap58l1; RGD1307961"
                     /inference="alignment:Splign:2.1.0"
     exon            611..767
                     /gene="Cfap58"
                     /gene_synonym="Ccdc147; Cfap58l1; RGD1307961"
                     /inference="alignment:Splign:2.1.0"
     exon            768..962
                     /gene="Cfap58"
                     /gene_synonym="Ccdc147; Cfap58l1; RGD1307961"
                     /inference="alignment:Splign:2.1.0"
     exon            963..1100
                     /gene="Cfap58"
                     /gene_synonym="Ccdc147; Cfap58l1; RGD1307961"
                     /inference="alignment:Splign:2.1.0"
     exon            1101..1260
                     /gene="Cfap58"
                     /gene_synonym="Ccdc147; Cfap58l1; RGD1307961"
                     /inference="alignment:Splign:2.1.0"
     exon            1261..1343
                     /gene="Cfap58"
                     /gene_synonym="Ccdc147; Cfap58l1; RGD1307961"
                     /inference="alignment:Splign:2.1.0"
     exon            1344..1535
                     /gene="Cfap58"
                     /gene_synonym="Ccdc147; Cfap58l1; RGD1307961"
                     /inference="alignment:Splign:2.1.0"
     exon            1536..1697
                     /gene="Cfap58"
                     /gene_synonym="Ccdc147; Cfap58l1; RGD1307961"
                     /inference="alignment:Splign:2.1.0"
     exon            1698..1844
                     /gene="Cfap58"
                     /gene_synonym="Ccdc147; Cfap58l1; RGD1307961"
                     /inference="alignment:Splign:2.1.0"
     exon            1845..1985
                     /gene="Cfap58"
                     /gene_synonym="Ccdc147; Cfap58l1; RGD1307961"
                     /inference="alignment:Splign:2.1.0"
     exon            1986..2209
                     /gene="Cfap58"
                     /gene_synonym="Ccdc147; Cfap58l1; RGD1307961"
                     /inference="alignment:Splign:2.1.0"
     exon            2210..2321
                     /gene="Cfap58"
                     /gene_synonym="Ccdc147; Cfap58l1; RGD1307961"
                     /inference="alignment:Splign:2.1.0"
     exon            2322..2426
                     /gene="Cfap58"
                     /gene_synonym="Ccdc147; Cfap58l1; RGD1307961"
                     /inference="alignment:Splign:2.1.0"
     exon            2427..2546
                     /gene="Cfap58"
                     /gene_synonym="Ccdc147; Cfap58l1; RGD1307961"
                     /inference="alignment:Splign:2.1.0"
     exon            2547..2680
                     /gene="Cfap58"
                     /gene_synonym="Ccdc147; Cfap58l1; RGD1307961"
                     /inference="alignment:Splign:2.1.0"
     exon            2681..3403
                     /gene="Cfap58"
                     /gene_synonym="Ccdc147; Cfap58l1; RGD1307961"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aggcgaccaa agacgcgccg agcgccggat ttcggcgccg gggctggcga tcagaaaaaa
       61 cgtgtcgccc ttttagacac tgggggcagt gcacagcccc ttccccagac tccagcccac
      121 ttttctgatc tcctcggcag cctttgaggc cgcctccaaa gagcgtcagg atgtcggagg
      181 aaaagcctga taaaatagcg ccggaggaaa ctgcatttga agaaatcgag aaagattttc
      241 aggaggttct cagtgaactt tcaggagaca aaagtctaga aaaattcagg gttgaatatg
      301 agaagcttca caccatcatg aaaaagtcct acgagaatga gaaacgtctc atggccaaat
      361 gcagagagct gaacgcggag atcgtggtga actctgccaa ggttgccact gccctgaagc
      421 tttctcagga cgaccagacc accattgcat ctcttaagaa ggaaatcgaa aaagcctgga
      481 agatggtgga ctcggcatat gataaggagc aaaaggccaa ggagacaatt ctcgccctga
      541 aagaggaaat agtgaacctg accaaactga ttgagcaggg gtctggactg tcaatggatc
      601 aggacagcaa catccgagat ttactgaagt tcaaagaaga ggtgacaagg gagcgcgacc
      661 agctcctgac agaagtggtg aagttgcggg agaacctagc tcagatcacc gaaaagcagc
      721 aggcagcgga gcgtgccaag gaagaagcgg aacacgccat cagtcagttc caacaagaaa
      781 tccagcatcg tcagaatgaa gcttccaggg agtctcggaa gaaggaaaag ctggagaaag
      841 agctcaagca gatccagttg gacatggacg gcaggcagtc agagatcaag gccatgcagc
      901 agtacatgca caagagcaag gaggagcttc agcggctgga acagcagctc aaggagcaga
      961 agatactgaa tgagagagct gcgaaggagg tggagcagtt tcagctgcgg aacatgaaac
     1021 tccagcaaga gaatgagcag cacacgttga cttgtgagca gctgtcccag gaaaaccagc
     1081 agaaggccct ggaactcaaa gccaaggagg atgaaatcca ccagatgcgc ctcgaccttg
     1141 ggaagcttaa caagatcaga gaacagatcc acaagaaact gcgcctgatc gatgaccaaa
     1201 agatcgaagt ggaacagcag aaggagaccc tgaagaacca gatcctgggg ttagagagag
     1261 aggtggagtc ttcaaagaag caagcggagc ttgataagaa ggcaatggag gagcttctga
     1321 gagagaggga catactgaac aagaatatgc ttaaggcagt cagtgcgacc cagaagcagg
     1381 tggacctggt gaagcttcac gagcaagcca agaggaacct ggaggaggag atccagaact
     1441 acaaggatga ggcccagaag cagaggaaga tcatctttca gctggaaaag gagcgggatc
     1501 ggtacatcaa tgaggccagc gacctcaccc agagggtcct tgcaaacatg gaagacatta
     1561 aagtccgaga aatacagatt tttgactaca ggaagaaaat cgctgaatca gagactaagt
     1621 tgaaacagca gcaaaacctg tacgaagctg tgagatctga cagaaacctg tacagcaaaa
     1681 acctggtgga ggctcaggat gaaataacag aaatgaagag aaagttgaag atcatgacgc
     1741 atcaggtgga ccagctgaag gaagaaatct ctgcgaagga ggctgccctt gtgaagctgc
     1801 atctggaaca gcagcgcatc gaaaaggaga aagagacact gaaggctgag ctgcagaagc
     1861 tgagacagca agccctggag accaaacact tcattgagaa gcaggaggtg gaagagagga
     1921 aactcttgcg catcattgcc gaggccgatg gggagaggct gaggcagaag aaggaattag
     1981 accaggtcat cagtgagaga gacatcctgg ggtctcaact cgttcggcgc aacgatgagc
     2041 tggccttgct ctatgagaag attaagatcc aacagtcggt gctgaacaaa ggcgagaccc
     2101 agtacaacca gagggtcgag gacatgcgca tcctgaaact ggagatcaag aagcttcgca
     2161 gggagaaggg gatccttgcc aggagtgtgg ctaacgtgga ggaactcagg caggagcttt
     2221 accacatgca aagggaattc ctgaaggaaa ggacgaggtg ccgtgccctg gaggaggagc
     2281 tggagaaccc catgaatgta cacagatgga gaaagcttga ggctagcgac cccagtacct
     2341 tcgagctgat ccagaaaatc cacaccctgc agaaacggct catcagcaag acagaagagg
     2401 tggtagagaa agaacttctt cttcaggaga aggagaagct gtacgtggaa ctgaagcaca
     2461 tcttggcccg gcagcccggc ccggaggctg cggaacagct gcagatctac cggtacacgc
     2521 tgcgggagaa gaccaagcag ctgaaagttc tgtcatcaga gttgaatatg tatgaatcgc
     2581 agagccagga gtacaagtat gagatcgaga gacttagcaa cgaactggtg actttaaaga
     2641 agaaatacct ggcccagaaa cgcaaagaac tcgttcagaa aaacaaggac aggatatcca
     2701 taaacaacat cttctcagac cccaagcagt ccgtccctcg atttactggg ggtggatttc
     2761 ccctcaacca gccacacaag gtgaaattgt aactggaagc tactcgatgg ctcaagctga
     2821 acagctcggc tggaaccttg cggaggaatc gtcttcaacc cctcagatca tagatgtata
     2881 gaaaaggctg gtgcccagct tttcggagtt ggaagggatg ggcagctatc agtgtcttgt
     2941 atataagagt gatgatgtcg tacctgaagc acacggacat taacagactg tgattggagc
     3001 tctttaatta agctggccct tgccatagag ctgatctttc gttacagtcg cactgactga
     3061 ctagaaaatg tgctaggttt agaaactcag ggtggatgaa gctttgggca tcaatttctc
     3121 tattatagat atttgagcac ttgaaggttt ttttttgtat gcaaaaatat tttatatgta
     3181 aaaaaaatgc aattcatgcc ctcacatctt attagtgaaa atctatttta attattcctc
     3241 atcaacaagc cgtaacacaa gatgagaaaa aaaaggacac atgactggga tttcaaaaag
     3301 tgtatattga gagtgatttc catgtgggac ctcgttccag gcctggggta ggaaaatctg
     3361 ttctgaagaa gaaatgccaa taaatacttc atcataaaaa aaa
//
