LOCUS       XM_008764092            4027 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus cilia and flagella associated protein
            57 (Cfap57), transcript variant X1, mRNA.
ACCESSION   XM_008764092
VERSION     XM_008764092.2
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086023) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jul 10, 2024 this sequence was replaced by
            NM_001431241.1.
            
            On Jan 21, 2021 this sequence version replaced XM_008764092.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4027
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..4027
                     /gene="Cfap57"
                     /note="cilia and flagella associated protein 57; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 ESTs, 105 long SRA reads, 6 Proteins"
                     /db_xref="GeneID:679641"
                     /db_xref="RGD:1585948"
     CDS             127..3876
                     /gene="Cfap57"
                     /codon_start=1
                     /product="cilia- and flagella-associated protein 57
                     isoform X1"
                     /protein_id="XP_008762314.1"
                     /db_xref="GeneID:679641"
                     /db_xref="RGD:1585948"
                     /translation="MSTVVAQSLHVFGLRSHVTNNIFFFDEQIVIFPSGNHCVKYNLD
                     QKWQKFIAGSDKSQGMLALSISPNRRYLAISETVQDKPIITIYELSSIPCRKRKVLNN
                     FEFQVQKFTSMAFSPDSKYLLTQTSPPESNLVYWLWEKQKVMAVIKADIQNNPIYQVS
                     INPQDNTQVCITGNGIFKILRFAEGTLKQTNFQRGESPNCLAHSWVSEDRIIVGTDTG
                     KLFLFESGDQRWETNIMVKEPTSSRSLDIIHESESLVEFPPPSSPASSIEQMSTTTYT
                     QQVVLPQVFAIAAYSKGFACSAGPGRVLLFEKVEEKDFYRESREIRIPVDPQSNDPSQ
                     SDKQDVLCLCFSPSEETLVASTSKNQLYSITMSLTEISKGEAAHFEYLLYPLHSASIT
                     GLATCIRKPLIATCSLDRSVRIWNYESNTLELYKEYQEEAYTVSLHPSGHYIVVGFAD
                     KLRLMNLLIDDIRSFKEYSVRGCKECAFSNGGHLFAAVNGNVIHIFTTTNLENINNLK
                     GHTGKIRSLVWNTDDSKLISAGTDGAVYEWNLSTGKRETECVLKVCSYNSVTISPDGK
                     VIFAVGSDQTLKEIADSLILREIPAFDVVYTAITISHSGRMIFVGTSVGTIRAMKYPL
                     PLQREFNEYQAHAGPVTKILLTFDDQFLLTVSEDGCLFTWKVFDKEGRGIKREREVGF
                     AEEVLVTKTDMEEKAQIMLELKTRVEELKMENEYQLRLKDMNYSEKIKELTDKFIQEM
                     ESLKTKNQVLKTEKEKQDISHREHLEDLIERQSRELQDLECCNNQKLLLEYEKYQELQ
                     LKSQRMQEEYEKQLRDNDETKSQALEELTEFYEAKLQEKTGLLEEAQEDVRQQLREFE
                     ETKKQIEEDEDREIQDIKTKYERKLRDEKESNLRLKGETGIMRKKFSSLQKEIEERTN
                     DIELLKTEQVKLQGVIRSLEKDIQGLKREIQERDETIQDKEKRIYDLKKKNQELEKFK
                     FVLDYKIKELKKQIEPRENEIKVMKEQIQEMEDELERFHKQNTQLELNITELLQKLRA
                     TDQEMRKEQQKERDLEALVRRFKTDLHNCVSYIQEPRQLKEKIRALFEKYVQRADMVE
                     IAGLNSDLQQEYARQREHLERNLATLKKKVVKEGELHRADYVRIMQENVSLIKEINEL
                     RRELKLTRSQIYDLESALKVSKKTRAQEAPESVLTKDVVGTSSTMRLNEQEETGRIIE
                     MQRLEIRRLRDQIQEQEQVPGFHTIAGVRLPSLVDSDVDFEVHTK"
     polyA_site      4027
                     /gene="Cfap57"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 gttttctcgt tgctatagga actgctctgg cgtttgggcg tgcccggatt gctccggctc
       61 tttaggaaga acacctgcgg gtcgctacgt tgtatagtaa tccagagtcg tgaagcaaga
      121 ggtaccatgt ccaccgtggt agctcagtcg cttcatgttt ttggtcttcg gtctcacgtg
      181 accaacaaca tcttcttctt cgatgaacag atcgttatat ttccttcagg aaatcactgt
      241 gtgaagtaca atctagatca gaaatggcaa aaattcattg caggctcaga caagagtcag
      301 ggcatgctgg ccttgtccat cagccccaat cggcgatacc tcgccatctc cgagacggtg
      361 caagacaaac ccatcatcac catttatgaa ctatcgtcca tcccttgccg gaagcgcaaa
      421 gtcctgaata attttgaatt ccaagttcaa aagttcacca gcatggcttt ttctccagac
      481 tctaaatacc tgctgacaca gacgtcgcct ccagagtcaa acctcgtcta ctggctgtgg
      541 gaaaagcaga aagtcatggc cgttattaaa gctgacattc agaacaatcc catctaccag
      601 gttagcatca atccccaaga taatactcaa gtgtgtatca ctggaaatgg gatatttaag
      661 attctccgtt ttgctgaagg aaccctaaag caaaccaatt tccagagggg agaatcccca
      721 aactgcctag cccacagctg ggtgtccgag gacaggatca tcgttggcac cgacaccggc
      781 aaactctttc tctttgaatc tggagatcag cgctgggaga caaacataat ggtcaaggag
      841 cctactagct cccggagcct ggacatcatc cacgagtcag agagcctggt cgagtttcca
      901 ccacccagct ccccagcctc ctccattgaa caaatgtcca caaccacgta cacacaacaa
      961 gtggtcctgc cgcaggtgtt cgccattgca gcctattcaa agggattcgc ctgctccgcg
     1021 gggccaggaa gagtgctgct gttcgagaag gtggaagaga aggactttta ccgggaaagc
     1081 agggaaatcc ggatccctgt ggacccacaa agcaatgacc caagtcagtc agacaaacag
     1141 gatgtcctgt gcctatgctt cagcccatca gaagaaaccc tggttgccag caccagcaag
     1201 aaccagctgt acagcatcac catgtccctg acagagatca gcaagggaga ggccgcccat
     1261 ttcgaatacc tgctgtaccc acttcactca gcgtccatca cgggcctggc cacctgcatc
     1321 cgaaaacccc tcattgccac ctgctccctg gatcgctccg ttcgcatctg gaattacgag
     1381 tcgaacacac tggagctata taaggaatac caagaagagg cctacacggt cagccttcac
     1441 ccctccggac actacattgt ggtggggttt gctgacaaac ttcgccttat gaacctgctc
     1501 attgatgaca tccgttcttt caaagaatat tctgtcagag gatgcaaaga gtgtgccttt
     1561 agcaatggag gtcacctgtt tgctgccgtc aatggtaatg tgattcacat cttcaccacc
     1621 acgaacctgg agaatatcaa caacctgaaa ggccacacag ggaagattcg ttcacttgta
     1681 tggaacacag atgacagcaa actgatttct gctggaacgg acggtgccgt gtatgagtgg
     1741 aatctgtcca cggggaagag ggagacagag tgtgtactca aggtctgtag ttacaactcg
     1801 gtcactatct cccctgacgg caaagttatc ttcgctgttg gatcagacca gactcttaag
     1861 gagatcgccg attctttgat ccttcgagag ataccagcat ttgatgtcgt ctacacggcc
     1921 atcaccatct cacattccgg acgcatgata ttcgtgggca cttcagtggg gactatccgt
     1981 gccatgaagt acccgctgcc tctgcagaga gaattcaatg agtaccaggc tcacgctggc
     2041 cccgtcacga agatactgct caccttcgat gaccagttcc tgctgacggt ctctgaggat
     2101 ggctgcctgt tcacctggaa agtctttgat aaggagggtc ggggaatcaa acgagagagg
     2161 gaggtgggct ttgctgaaga ggtactcgtg actaagacag acatggagga gaaggctcag
     2221 atcatgctgg agctgaagac gcgtgtagag gaactgaaaa tggagaacga gtatcagctc
     2281 cggctgaagg acatgaacta ctcagagaag atcaaggagc tgacagacaa gttcatccag
     2341 gagatggagt ccttgaagac gaagaaccag gttttaaaaa cagagaaaga aaaacaggac
     2401 atcagtcacc gagagcactt agaagacctc atagaaagac agagccggga gctgcaagac
     2461 ctggaatgtt gtaacaacca gaagctgctc cttgaatacg agaagtacca ggagctgcag
     2521 ctcaagtccc agaggatgca ggaggagtac gaaaaacagc tccgagacaa tgatgagacc
     2581 aagagccaag cactggagga gctgaccgag ttctacgagg ccaaactcca ggagaaaacc
     2641 ggccttctgg aagaggcaca ggaagatgtc cgacagcagc tccgggaatt cgaggaaacc
     2701 aagaagcaga ttgaagaaga tgaggacagg gagatccaag acatcaaaac caagtatgag
     2761 agaaagcttc gagatgaaaa ggagtccaac cttcggctta agggagaaac aggaatcatg
     2821 aggaagaagt tcagcagcct gcagaaggag atcgaagagc gcaccaatga catcgagctc
     2881 ctcaaaacgg agcaggtgaa gctgcagggg gtcatcaggt ccctagagaa ggacatccaa
     2941 ggactcaaga gagagatcca ggagagggat gagaccattc aagacaagga gaagcgaatt
     3001 tatgatctga agaagaagaa ccaagagtta gagaaattca aatttgtcct tgactacaaa
     3061 ataaaggaac tgaagaagca aatagaacca agggagaacg agatcaaagt gatgaaggag
     3121 cagatccagg agatggaaga cgagctggag cgattccaca aacagaacac gcaactggag
     3181 ctgaacatca cggaactgtt gcagaaactg agagctacag atcaggagat gcgcaaggag
     3241 cagcagaagg aaagggacct ggaagcgctg gtccggcggt ttaagacaga ccttcacaac
     3301 tgcgtgtcgt acatccagga accccggcag ctgaaggaga agatccgtgc tctctttgag
     3361 aagtatgtgc agcgggcaga catggtggag attgcggggt tgaactcgga cctgcaacag
     3421 gagtacgccc gccagcggga acacctggag aggaaccttg ccacactcaa gaagaaagtg
     3481 gtcaaggaag gcgagctgca ccgcgccgac tacgtccgca tcatgcagga aaatgtctct
     3541 ctgatcaaag aaattaatga gctccgcagg gagctgaagt taacccgctc ccaaatctat
     3601 gaccttgaat cagccctgaa agtatccaag aaaacgcgag cacaagaagc tccagagtca
     3661 gtgctcacca aggatgtcgt cggcaccagt tctactatga ggctaaatga acaagaggaa
     3721 accgggagga tcatcgagat gcaacgcctg gaaatccgcc gcctcagaga ccagatccaa
     3781 gagcaggagc aggtcccagg cttccacacc atcgctggag ttcggcttcc ttccctcgta
     3841 gactcagatg tggattttga agtgcacacc aagtgacctc cgggcgagcc atttccagtc
     3901 acagccagaa gcacaggatg caccgggtgt ctgccactga gccagacttc tacctgagtc
     3961 ccaccagcct ctttcatgga aagatggggg cagggggcag ggtcagaata aaggtgtttg
     4021 ctcacaa
//
