LOCUS       XM_344700               5624 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus cilia and flagella associated protein
            53 (Cfap53), transcript variant X1, mRNA.
ACCESSION   XM_344700
VERSION     XM_344700.10
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051353.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_344700.11.
            
            On Jan 21, 2021 this sequence version replaced XM_344700.9.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5624
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="18"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5624
                     /gene="Cfap53"
                     /note="cilia and flagella associated protein 53; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 4 ESTs, 3 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 19 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:364899"
                     /db_xref="RGD:1306734"
     CDS             219..1847
                     /gene="Cfap53"
                     /codon_start=1
                     /product="cilia- and flagella-associated protein 53
                     isoform X1"
                     /protein_id="XP_344701.3"
                     /db_xref="GeneID:364899"
                     /db_xref="RGD:1306734"
                     /translation="MATGLCVREVNSTGLSSFLSPPSQRDLKMYSQRFGTVPREFKGP
                     TPKAVIIRAKPPKAQRAEQHLKRIQRSYHKYHTTLASIKSNEQDRLNRDWIQHSNRKS
                     FDTLVKARVKDAMQGFVINTEERRNKLRELLASEENEYFSEMQSKGETIEEKKDKMRE
                     RTKLLREKKEKERQDFVAEKLDQQFRERCEELRTQLVSIHEKKVIEERNVQVEFNKEL
                     KRQKLVEEQLFAKLWEEDRLAKERREAQDEKRQRELVENTRLGLDAQVTSIQAQREAA
                     RRMKEEEARVLEQYKAQVKREDEQEKLQKQKTRQETRNSLKKAVQEKMESMQQEYRED
                     LDLNMKLVGRALQDLQDEADKKKQKREDMGREQKIYNDYLVQRRKEEKAQEQELDRLL
                     EDIKAKKQAEKDQELALEKEARRQLLNEVMCTRKLQVQEKLQRKLKEQEELALHEQRI
                     NESLKVLHEEDMKDFARRCALAEEYRNQLRMQIAYQQQAREAEKEEERQEFEAGLAAN
                     QVYADKIQKILAEHQVLSQNVHPMRRAYLDKPAL"
ORIGIN      
        1 gttttgaccc ttagagttaa aaggtttttt aggtcccctc cccatcccat ctgtctttct
       61 ggtgagccct ggagaaagag aggaaggagg tgttcccctg ctgggcagtg gatgggtggg
      121 ttgagggcag cagattgctc ttatgggcca gtgagactgc ttccacttgg cccgcccacc
      181 ttcactccag cggcacgcgg gggcggggtt gccgcaccat ggcaaccggc ctctgcgtca
      241 gggaagtaaa ctccaccggg ctttctagtt tcctctcgcc accatcccaa agagatctga
      301 agatgtacag ccagcggttt ggcactgttc caagggaatt taagggccct actcccaaag
      361 cggtgatcat aagagccaag cctcccaaag ctcagagggc tgagcaacat ctgaaaagaa
      421 tccagcgcag ctaccacaag tatcacacta ctttggcttc catcaaatca aatgagcagg
      481 accgcctgaa ccgtgactgg attcagcaca gtaaccgcaa gtcctttgac actctcgtga
      541 aagcaagagt caaggatgcc atgcaaggtt ttgtcatcaa taccgaagag agacgaaata
      601 agctacgtga acttttggca tcagaagaaa atgagtattt ttctgaaatg caatcgaaag
      661 gagaaaccat tgaagagaaa aaagacaaaa tgagagagag aaccaagtta ttaagagaga
      721 agaaggaaaa agagaggcag gattttgtag ctgaaaagtt agaccagcag ttcagggaac
      781 gctgtgagga gctccgtact caactggtta gcatccacga gaaaaaggtg attgaggaac
      841 ggaacgtgca ggtagaattc aacaaggagc tgaagaggca aaagctggtg gaagagcagt
      901 tgttcgccaa gctttgggag gaagacagat tagcgaagga aaggcgagaa gcccaagatg
      961 agaagagaca gagagaactg gtagaaaata cacgcttggg gctggatgct caggttacca
     1021 gcatccaggc gcaaagggag gctgcgcgaa ggatgaagga agaggaggcc cgcgtcctgg
     1081 agcagtacaa agcacaggtt aaacgagagg atgaacaaga gaagcttcag aaacagaaga
     1141 caagacagga aacgaggaac agcttgaaaa aggctgtgca ggagaagatg gagtctatgc
     1201 agcaggagta cagagaagac ctggacttga acatgaagct cgtgggaagg gctcttcaag
     1261 acttacaaga tgaggcagat aagaagaagc agaagagaga agacatggga agagaacaga
     1321 agatctacaa tgactatcta gtgcagcgac gaaaggaaga aaaagcccag gagcaagaac
     1381 tggacagact actagaggac ataaaggcaa agaagcaggc tgagaaggat caggagctgg
     1441 cactcgaaaa ggaggcaagg aggcaactcc tgaatgaagt catgtgcaca agaaaactcc
     1501 aagttcaaga aaaattgcag cgaaaactca aagaacaaga agaacttgct ctgcatgaac
     1561 agcgcataaa cgaaagcctg aaggtgcttc acgaggaaga catgaaagat tttgccaggc
     1621 gctgcgcttt ggctgaggag tataggaatc aacttcggat gcaaattgcc taccagcagc
     1681 aggcccgaga agcagaaaag gaagaggaac gccaagaatt tgaagcaggg ctggccgcga
     1741 accaagtcta cgcggacaaa atacagaaga tcctcgctga gcatcaagtt ctgtcccaga
     1801 atgttcatcc catgcgcagg gcttacctcg acaagcctgc tctatagttt tatgcaaatc
     1861 agtgcgtgtt ttctgggtct ttcactattt ttaactacac cttttaacta atggataaac
     1921 tcgtattctc tgaggttgta tactttatta gacataattt tctttcttca gataaatttg
     1981 ttctttggat actagttaac tctatattgc tatagcaaac tacccaacat tgtcagctta
     2041 aaaagaataa agatttattt tagcttccag taacagaggg gttgctgcgc agtttgtgtg
     2101 gttttacagg ctgtgaaact tgtctggtgc tttaccaaaa ccctggagac aggaattagt
     2161 aaagaaaaag ggggttgtct ataatttggg ccatgttctg gttcccctgc tgtgataaac
     2221 cactgactaa acgtaaccag gggaagaatg tgtttttctt acattttcaa accacatcat
     2281 tcactgtggg aaatcaggct caagacaagc aggaacttga agaagaaacc ttcgaggaac
     2341 actttgctgg agcactttct tgctcaatca caagcttatg attagcctta gcttctcata
     2401 cagcctagga aagtgctgcc cacagtgggc actcctgcat caacttgtta tccagacaat
     2461 cccccacaga catggccaca ggtcaatctg atctaggcaa tctctgggta gaggtttctt
     2521 ctctaagctg tttctaggta acgaggccaa ccaggacaga ccagaattgg atgctgctgt
     2581 tgttgttgct gctgctgctg ctgctgctgc tgctgtttct gttttgtttt tgtcagtttc
     2641 tatctttttt tttttttttt tggttctttt ttttcggagc tggggactga acccaggacc
     2701 ttgcgcttcc taggcaagcg ctctaccact gagctaaatc cccaatccca tcagtttcta
     2761 tctttaggaa tgaaaggcta caatccagac cagatttcta ttccagctag agcccctgta
     2821 gtagctctga caggagtctg tgactcttca gctaacagac taccaggtgc ccaaatttct
     2881 tatcttggaa agtgtattta cagtaaagga aacgttgggt gggagtggag cacagttctg
     2941 ttccgcactt cttccctgtc ttcctacctg agactgtgag agcctagcta caagttcagg
     3001 ctaagaccac tcgcatatca gaaatctacc atgtgtgcct aagtcctctc tttagagccc
     3061 ctgccatgct gttgtctatt tgtccatagc attaataatt tttctaataa tcttatggtg
     3121 aacagtccat ctcagtgtcc ttcttgaacc cacacctgag atctttcatt ctcctatgtc
     3181 attattacag tagattgaca agacaaagca aaaaagacag gacgtgcagg tatgtagcct
     3241 tagctttgaa ataagttatc agaatccttt tctgcccttc tctggcagtt tgcttcagga
     3301 ttctcttacc cacagatgaa atttccttgg aaaatttaat ttcttgttgt ttgaccccta
     3361 aagaccttga aaatgctggg caaaggctct accacttggc caggtcccca gtcctcttat
     3421 aaataaatac ataaatatag aaataaataa atgaataaat aaataaataa atataaatat
     3481 tgagctgttg tcttagttat ccaggctgac catgaacatg tgatcttacc tcagcctcca
     3541 gagtagacaa aattaaagtc ttggccacta ggctagatca caacttgatt ctttaaggtc
     3601 tctgttgtac tgtctccagc actgtccctg tgtctatgac aagacagtta tgcgaatgga
     3661 agcttccgac agaaaacaag taataggaag ggaccaggga caaggcatgc actttaaagg
     3721 aatgctgccc caacgccatg agtcacttcc tctgacaaga tgttcccttc cgtggttgta
     3781 ccacctccca atagtggatg caaatattaa acacataatt tagagagatg aagtctcaaa
     3841 gcaaatgtcc taaaaataag agcaaattcc cccaatcttt ttttttttgg cttattatat
     3901 ataagtacac tgtagttatc ttcatacaca gcagacaaga gcatcagatc tcattacaga
     3961 aggtggttgc tgggatttga actcaggacc tctcgaagag cagtcaatgc tcttaaccac
     4021 tgagccatct ctccaactct gccccccaat cttttaaaca atcgcactcc taactttttg
     4081 gagcctgacc cagtggctca tgataaaata aagccaactc tttgatgact tccggcccct
     4141 cacctcattt ccccgtctga ggaagggcaa atggggttat aaaatttact gcataacaaa
     4201 gtagggagct tcacacctat tttctattca aacaactcca aatggccttg gacacaagtc
     4261 tagcctaccc tatataggga gttcctggct agccagggtt acattgtgag acattgtctc
     4321 aaaataaaaa gttaaagtaa tctatcttca ctataaaaag attccactct ccatcagggg
     4381 ttcaactttc cctcgatccc tctctctcag aatatgataa ccgtatttct gtctgtggaa
     4441 gccaggtaca ggcagagggc acagtaggat ctcatttggc agtgagttca tgggcagtaa
     4501 acaaaaaaga aacacccagg agtagctaca gagaactggc ttatttatta gataggaagg
     4561 tggccagggt ctctgggaaa aggtccttgt ggttgtgtac aattggccag ggcggggtgt
     4621 tggaagacac ttcatctaca tactcagtgg ctgtaggatc ctgagggcca ggagttgggc
     4681 ttataacatc aaatgaggag taatgactta tagctgtcag ccactatggt tctacatttg
     4741 cctacaatga ttatcatttg ttagaatgct tatttgggaa aaagatttaa aggatcaaga
     4801 aagatggttt tgaaagcctg ctgacctgtt tgacccctgt agttcaagat ggaaggaggt
     4861 tacagattct taaaagcctt catgtatcca aacacactcc agcactggct ggtgtgactg
     4921 aggaatgcca tcatttcctg agtccatttg tttacattga cgcctcggtg ctctagaatc
     4981 aaccctctcc ccaaacagtc acatgtgctg caacacactt gaggttttcc tgaccttgac
     5041 catggtccag atgtgctaat cagaataatc aatgtttcca caaacaacat aaatgaagat
     5101 aactggaaaa cgtatgagtc aaacgtaact gtcacgttat ttctgaaaca attactttgt
     5161 tcttccagaa acaaacattt caaggctatt ctgactctca tctaactttg ctgtgaggta
     5221 ttgaaggacc ctaggggttt tcgccagcct tacacccacc tgcctctggt caaggctagg
     5281 ccaagttccg ttctccaccc acagttctcc agaggagcaa gaacattctt taaaaaaaaa
     5341 aaaccacaga atgtattgac tgatagttgc ctgaccctct ggtcccaggt agaattccaa
     5401 tgcatgtcat aatctacaca tgcttgctag ccaatagact taaagatcaa tatgcttagc
     5461 caataagttt aaactgtaac ccagctgatg taacctatac ccctaaaaag tataaaaact
     5521 gcttgttata gtcatttggg atctccttct agtcactcac cttgaaggac tacttgaggg
     5581 tggatcttgt cgtgatggaa aataaacctc ttgcttttgc atca
//
