LOCUS       XM_345041               5292 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus cilia and flagella associated protein
            43 (Cfap43), transcript variant X1, mRNA.
ACCESSION   XM_345041
VERSION     XM_345041.9
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_345041.10.
            
            On Jan 21, 2021 this sequence version replaced XM_345041.8.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5292
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5292
                     /gene="Cfap43"
                     /note="cilia and flagella associated protein 43; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 9 ESTs, 2 long SRA reads, 3 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 39 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:365476"
                     /db_xref="RGD:1560545"
     CDS             85..5109
                     /gene="Cfap43"
                     /codon_start=1
                     /product="cilia- and flagella-associated protein 43
                     isoform X1"
                     /protein_id="XP_345042.5"
                     /db_xref="GeneID:365476"
                     /db_xref="RGD:1560545"
                     /translation="MSQGRERDEASATVIPSASAHYSGASLSVRWVQGFPSQNVHFVN
                     DNTICYPSGNYVIFINLETKKKTVLQCINGIVGVMATNVPGEVVAFSDRRLKPIIYIY
                     SFPSLTRKIKLKGDILLDYNLLCFSYCGTYLASYSSLPEFELALWNWEANVILCKKSN
                     PGMDVSQMTFNPMNWRQMCLSSPSAVSVWTIERSNQEHHFRIRLVKLPQEDGTLSNET
                     DMLFPTSLPKDLIYGPVLPLSAIAGLVGEEAETFRPKDDIYPLLHPTMHCWTPSSDLY
                     VGCEEGHLLMINTETLKVTVLQKLEEFPVLDGAQLINPLTLVYQKDGILASGIDGVIY
                     SFIIKDTKYEVKPFLEFDGPVAHLAFSPSYKMLLIQTDKGSVYIYTFGTEPVLDKLLE
                     ACDGKVQAISFITPGNKYFLTLTSSGEVSIFSIEDGTCTGRIFLRTHATTLACSPSSS
                     SAAMGTVDGSVYFLNILDVESPQLIHQAFLSKSPVKILIYDQRGIFLLVGTEEGKIFV
                     IDARPSKSFQIFGYTESSKDMLQISTVSHVESDVVEVLVLSPLSETGRSRLEYFTLPI
                     MLPQVVPENFADERGRLKDNFTHRYLYEVEHALSSAVLGFSESKIYGFCSQVPYICSY
                     TMPVKEHTGICILKPQQKVQSKQYGAGTIYLSSHGLWLITIAKCGVLCIRDMFSLDTF
                     VRCRSHSHHGQGIQNMKMSMDGQHILVNGKDDNTLVYLKWKRLGSNIANEIFEHCHQL
                     MLSLAKTVETECDYLASPDYQCVPPEEETTEFQKKLSLYSSQEELAIDLNKIPWIQRK
                     MEEAVKKEVRIFTPRRKEIKRGIKELAQIIAAMMEENEKLDTIAKLDEQEFCLDAEEL
                     ERLHDECEEEVSKIRKDVEMHNLAKSYLTELIKEECWNSMAVKGRALKCFHIPYVVDN
                     FPMKERTEEELLELSKVIQQKKTEIECLKLRKEIVEAQSAATMVKKHHEEEEEEEEED
                     EEKVVKSTSLPNYLLGSLSTDFGADTSLLTNQLELHSREEKINQIILLKDIIYNIKKT
                     FNSEFDAAYKQKEIEIARVQEKNVRIAEIISDLELEEKVWQPVFEDSEKPERALVVED
                     DEISLQKYFAPWHKTKAELLTAFDAERLQQARLSDARHRGLMDMMGGVLEVKKEDILR
                     MVIPQPPFMSKPDALWSEEERKQFKEYEKKVKELNEERDKYRKSLEAELKKLQNAIQE
                     NTQNFDEHLKRLFERRVKAEMVINQEELKINNIVFSLLLDEELSSREQFLNNYLQKKQ
                     DEKTKTSEAIQKAREDLDVFKENHDTLVAEDKVLDRSFKKEFSDISGHQVDVLYKLFK
                     RRPRVPKQKTQTEVNTLVPYGERPGSGKLNKETFAQLMKSMDELDNVSNMPEGLDPSV
                     WEHFCATRRAKVENEYKVKQKAACLLEMTTFLRKRMEDDDVVHHEIERVFHELVRLQD
                     EKVKFQVNLTVQILLKQGQVELENFQLTLEYSDAILINKNIIEELNSVIRTQGQKKVA
                     SMMESKEVHKGIYQIEWEHKKMEMEMEDLNQKAWDIQMLFFSRDRQKYLNEPNYEGVI
                     AIQIGIMEQTISVIDKNHKKNVENCKKLLKKLGKCSNQKDVANYNLSCNLREELVAVS
                     ERQDICNEIGSKLTCEKIARERYDNLMKQQKLTNISKQQAEQISILQAEVERLRMKTF
                     PALVPM"
ORIGIN      
        1 aacagtggag tcttcgcggg cgtcttagcc cgacccggca gggctacgga gtaacggccg
       61 cagccccggg tgggctgagt cggcatgtcg caaggccggg agcgcgacga ggcctctgcc
      121 acagtcatac cctctgcctc tgcccattac tccggagcct ccctgtcggt gagatgggtg
      181 caaggattcc ctagtcagaa cgttcatttt gtcaatgaca acaccatctg ctacccttct
      241 gggaactatg taatattcat taacttggaa accaagaaga agactgtact ccagtgtatt
      301 aatgggatcg tgggcgtcat ggcaaccaat gtccccggtg aagtcgtggc tttctctgac
      361 cgcagactta aacccatcat ctacatatac agctttcctt cactgaccag aaaaatcaag
      421 ttaaaaggcg acatcctcct agactacaat ctgctttgct tcagttactg tggcacctac
      481 ctggccagtt actcgtctct cccagagttt gagctggccc tctggaactg ggaagccaat
      541 gtcatcttgt gcaagaaatc gaatcctgga atggatgtga gtcagatgac cttcaacccc
      601 atgaactggc gccaaatgtg cttgtcaagt ccaagcgccg tgagcgtgtg gaccattgaa
      661 agaagtaacc aggagcatca tttcaggata aggctggtga agctgcctca agaagatggg
      721 acgctctcaa atgaaaccga catgcttttc cccacctctc tgcccaagga tctcatttat
      781 ggacccgtat tgcccctgtc ggccattgcc gggctggtgg gcgaagaggc agagacattc
      841 aggccgaaag atgatatata tcctctgctt cacccaacta tgcactgctg gactccgtca
      901 agcgacctgt acgttgggtg tgaggagggt catcttctga tgattaacac ggaaaccttg
      961 aaggtgactg tgctccagaa gctggaggag tttccagtac tggatggagc ccagcttatc
     1021 aatccactca cgctggtgta ccaaaaggac ggcatactcg cttctggaat tgacggtgtg
     1081 atatactcgt tcatcatcaa agacacaaag tacgaagtga agcccttcct tgagtttgat
     1141 gggccagtgg cacatttggc gttctcccct agttacaaaa tgttgctgat tcaaacagac
     1201 aaggggtctg tttatatcta cacgtttggc acggagccgg ttctcgataa actcctagag
     1261 gcctgtgacg ggaaagtcca ggccatcagc tttatcacgc ctgggaacaa atacttcctg
     1321 acgctcacga gttcggggga agtttctatt ttttcgatag aagatggcac ttgtacgggc
     1381 aggattttcc tgaggactca cgcaacaact ctggcgtgct ctccttcttc ctcatcggct
     1441 gccatgggga cagtggatgg ctctgtgtac ttcctgaaca tccttgacgt ggagtcccct
     1501 cagctgattc accaggcctt cctctccaag tcgcctgtga agatactgat ttacgaccag
     1561 cgaggaatct ttctgttagt cggtacagaa gagggaaaaa tctttgtcat cgatgccaga
     1621 ccctcaaagt cattccagat ttttggatac actgagtcaa gcaaggacat gctgcagata
     1681 tccacggtgt cacatgtgga atcggacgtg gtcgaagtgc tggtgttgtc cccgctttca
     1741 gaaacgggca gaagcaggct ggagtacttc accctgccta tcatgttacc acaagtggtc
     1801 cctgaaaact tcgctgatga aagaggacgg ctgaaggaca acttcaccca caggtacctg
     1861 tatgaggtgg agcacgctct gtcctctgcc gtgctgggct tctcagaatc caaaatctat
     1921 ggcttctgca gccaggtgcc gtacatctgc agctatacaa tgcctgtaaa ggagcacacc
     1981 ggcatctgta tccttaagcc tcaacaaaaa gtccagagca aacagtatgg agccggaaca
     2041 atctatctgt cctctcacgg attatggctt ataacaatag ctaaatgtgg agttctctgt
     2101 atccgagata tgttcagtct ggataccttt gttcgatgtc ggagtcattc tcaccatggt
     2161 caagggattc agaacatgaa aatgtcaatg gacggacagc acatcctggt gaatgggaaa
     2221 gacgacaaca ccctggtcta cctcaagtgg aagaggcttg gatcaaacat agcaaatgag
     2281 atctttgaac actgccatca actaatgctc agtctggcca agaccgtgga aacagagtgt
     2341 gactacctgg cttcgccaga ttaccagtgt gtacctccag aagaagagac aactgaattc
     2401 cagaaaaagt tgagcttgta ctcatcccaa gaggaattag ccatcgatct caataaaatt
     2461 ccctggatcc aacgaaaaat ggaagaggcc gtcaaaaagg aggtgaggat ttttacccct
     2521 agacgaaagg agatcaaacg aggaatcaag gagctcgctc aaattattgc agctatgatg
     2581 gaagaaaatg aaaagctgga caccattgca aagctggatg agcaggagtt ttgcctggat
     2641 gctgaagagc tggaaaggct tcacgatgaa tgtgaggagg aggtatcgaa gattaggaaa
     2701 gatgtggaga tgcacaactt agccaagagc tacttaactg agcttatcaa ggaagagtgc
     2761 tggaactcaa tggctgtgaa gggccgtgct ctaaagtgtt ttcatatacc ctatgtggtt
     2821 gacaacttcc ccatgaagga gcgcacagaa gaagaactgc tggagctgag taaagttata
     2881 cagcaaaaga agactgagat agagtgtctt aagctccgga aggaaatcgt agaggcgcag
     2941 tctgcagcca ctatggttaa aaagcaccac gaagaggagg aggaggaaga ggaagaggat
     3001 gaagaaaagg tagtgaaaag taccagtttg cccaattacc tacttggtag tttgagcact
     3061 gattttgggg cagacacgtc tctgttgaca aaccaattgg aacttcattc cagagaggag
     3121 aaaatcaacc aaattatatt gctaaaagat atcatttaca atataaaaaa gactttcaat
     3181 agtgaatttg atgctgccta taagcaaaaa gagattgaaa ttgcacgcgt acaagaaaag
     3241 aatgttagga ttgcagaaat catttcagac ctggaattgg aagaaaaagt ctggcagcca
     3301 gtgtttgaag acagcgagaa gccagaaaga gcccttgttg tggaagatga cgagatttca
     3361 cttcagaaat actttgctcc ttggcacaaa accaaagcag aattgctcac agcctttgat
     3421 gcggagcgac tgcaacaagc tcggctctct gatgcaaggc acaggggcct gatggacatg
     3481 atggggggcg ttctggaagt caagaaagaa gacatcctaa ggatggtgat ccctcagcct
     3541 cctttcatga gcaaacctga tgctctgtgg agcgaagagg aaaggaagca attcaaagag
     3601 tacgagaaga aagtcaagga gctgaatgaa gagagagaca aatacagaaa gtctttagaa
     3661 gcggaactga aaaaacttca aaatgctatt caagagaaca cacagaactt cgatgagcat
     3721 ttgaagagac tctttgaaag gagagtgaag gcagagatgg tcatcaacca ggaggagctg
     3781 aaaataaaca acattgtgtt ttctttgctg ctggatgaag aactcagctc cagggaacag
     3841 ttcctgaaca actaccttca gaagaagcag gatgagaaaa ccaagacttc agaagccatc
     3901 cagaaagcaa gagaagacct ggacgtgttc aaggagaacc atgacacctt agtggcagaa
     3961 gacaaagttc tggatcgcag cttcaaaaag gaattttctg acatttctgg tcaccaggtg
     4021 gacgtactct acaaactttt taaacgtcgg ccaagggttc cgaaacagaa aacacagaca
     4081 gaggtgaaca ctcttgttcc ttatggagag cggccaggat ctggcaagtt aaataaggaa
     4141 acctttgccc agctaatgaa gtccatggac gagttggaca acgtcagtaa catgccagaa
     4201 ggcttggacc cctcagtctg ggaacatttc tgcgcgacta gacgagcaaa agtggaaaat
     4261 gagtacaaag tgaagcagaa ggcggcctgc ctgttggaaa tgaccacatt cctccggaag
     4321 agaatggaag atgacgatgt cgtacatcat gagattgaga gggtattcca cgagctcgtc
     4381 cgattacagg acgagaaagt aaaattccag gtgaatttga cagtgcagat tcttcttaaa
     4441 caaggacaag tggaactgga gaatttccag ttgactctgg aatattctga cgcgattctc
     4501 atcaataaga atataatcga agagttgaat tctgtgattc ggactcaagg acaaaagaaa
     4561 gttgctagca tgatggaaag taaagaggtc cacaaaggga tctatcagat tgagtgggag
     4621 cacaagaaaa tggagatgga gatggaggac ctaaaccaga aggcctggga catccagatg
     4681 ctgttcttct cacgagatcg gcaaaagtac ctaaatgaac ccaactacga gggcgtgatt
     4741 gctattcaga ttggaataat ggagcaaacc atcagtgtta tagataagaa tcacaagaag
     4801 aatgtagaaa actgcaaaaa actactcaag aagttgggaa aatgcagcaa tcagaaagat
     4861 gtagcaaatt ataacctaag ctgtaatcta cgggaggaac tggtggccgt ctcagagaga
     4921 caagacatct gtaatgaaat agggtctaag ctgacctgtg agaagatcgc cagagaacgc
     4981 tatgacaacc tgatgaaaca gcagaagctg acgaacatct ccaagcagca agctgagcag
     5041 atttcaattc tgcaggcgga agtcgaaaga ctgaggatga aaacattccc tgctctcgtc
     5101 ccaatgtaga ataccagcag gagcagaagg tagaccaatg ctgacctaac gtcccttgga
     5161 tagaaacttc tttctccctt atcacaaaat ttaagtaggc catctctcag ccgcacgttt
     5221 ttaataatgc agtttaggtg gttactcagt atagttacct gtcctccatg aataaatgag
     5281 caaaatatca ca
//
