LOCUS       NM_001024866            1446 bp    mRNA    linear   ROD 08-FEB-2025
DEFINITION  Rattus norvegicus cilia and flagella associated protein 36
            (Cfap36), mRNA.
ACCESSION   NM_001024866 XM_214120
VERSION     NM_001024866.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1446)
  AUTHORS   Lokaj,M., Kosling,S.K., Koerner,C., Lange,S.M., van Beersum,S.E.,
            van Reeuwijk,J., Roepman,R., Horn,N., Ueffing,M., Boldt,K. and
            Wittinghofer,A.
  TITLE     The Interaction of CCDC104/BARTL1 with Arl3 and Implications for
            Ciliary Function
  JOURNAL   Structure 23 (11), 2122-2132 (2015)
   PUBMED   26455799
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000014.1.
            
            On Nov 27, 2020 this sequence version replaced NM_001024866.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC097425.1, SRR22399492.597923.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-230               JAXUCZ010000014.1  107192177-107192406 c
            231-295             JAXUCZ010000014.1  107190373-107190437 c
            296-397             JAXUCZ010000014.1  107189377-107189478 c
            398-512             JAXUCZ010000014.1  107179356-107179470 c
            513-600             JAXUCZ010000014.1  107175807-107175894 c
            601-652             JAXUCZ010000014.1  107174304-107174355 c
            653-755             JAXUCZ010000014.1  107170574-107170676 c
            756-895             JAXUCZ010000014.1  107168070-107168209 c
            896-1045            JAXUCZ010000014.1  107167772-107167921 c
            1046-1446           JAXUCZ010000014.1  107166937-107167337 c
FEATURES             Location/Qualifiers
     source          1..1446
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /map="14q22"
     gene            1..1446
                     /gene="Cfap36"
                     /gene_synonym="Ccdc104; RGD1311732"
                     /note="cilia and flagella associated protein 36"
                     /db_xref="GeneID:289859"
                     /db_xref="RGD:1311732"
     exon            1..230
                     /gene="Cfap36"
                     /gene_synonym="Ccdc104; RGD1311732"
                     /inference="alignment:Splign:2.1.0"
     CDS             116..1147
                     /gene="Cfap36"
                     /gene_synonym="Ccdc104; RGD1311732"
                     /note="coiled-coil domain-containing protein 104;
                     coiled-coil domain containing 104"
                     /codon_start=1
                     /product="cilia- and flagella-associated protein 36"
                     /protein_id="NP_001020037.1"
                     /db_xref="GeneID:289859"
                     /db_xref="RGD:1311732"
                     /translation="MAAEEEDEVEWVVESIAGFLRGPDWSIPILDFVEQKCEVFDDEE
                     ESKLTYTEIHQEYKELVEKLLESYLKEIGINEDQFQEACTSPLAKTRTSQAILQPVLA
                     AEDFTIFKAMMVQKNIEMQLQAIRIIQERNGVLPDCLTDGADVVSDLEQEEMKILREV
                     LRKSKEEYDQEEERKRKKQSSEGKMEEPPIYTSETAKLTNSQGDGEHFVQPSSEVKVH
                     FTNQSVQPLARKMELLPETSSLTQKGLKIPGLEHASMEGPIANLSALGTEELRQREHY
                     LKQKRDKLMSMRKDMRAKQIQNTEQKGKPTREAEEMTEKPEMTAEEKQTLLKRRLLAE
                     KLKEEVINK"
     exon            231..295
                     /gene="Cfap36"
                     /gene_synonym="Ccdc104; RGD1311732"
                     /inference="alignment:Splign:2.1.0"
     exon            296..397
                     /gene="Cfap36"
                     /gene_synonym="Ccdc104; RGD1311732"
                     /inference="alignment:Splign:2.1.0"
     exon            398..512
                     /gene="Cfap36"
                     /gene_synonym="Ccdc104; RGD1311732"
                     /inference="alignment:Splign:2.1.0"
     exon            513..600
                     /gene="Cfap36"
                     /gene_synonym="Ccdc104; RGD1311732"
                     /inference="alignment:Splign:2.1.0"
     exon            601..652
                     /gene="Cfap36"
                     /gene_synonym="Ccdc104; RGD1311732"
                     /inference="alignment:Splign:2.1.0"
     exon            653..755
                     /gene="Cfap36"
                     /gene_synonym="Ccdc104; RGD1311732"
                     /inference="alignment:Splign:2.1.0"
     exon            756..895
                     /gene="Cfap36"
                     /gene_synonym="Ccdc104; RGD1311732"
                     /inference="alignment:Splign:2.1.0"
     exon            896..1045
                     /gene="Cfap36"
                     /gene_synonym="Ccdc104; RGD1311732"
                     /inference="alignment:Splign:2.1.0"
     exon            1046..1446
                     /gene="Cfap36"
                     /gene_synonym="Ccdc104; RGD1311732"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ccaggcgatt gcggggaccg tgttgcccgc attccccgtc gcttcctgcg gccgaaaggc
       61 cagactgggc cgggggaatc cggcctaggc gtccgcgtcg cccggtgcga gcgggatggc
      121 tgcggaagaa gaggacgaag tggaatgggt ggtggagagc atcgctgggt tcctgagggg
      181 cccggattgg tctataccta tcttagactt tgtggagcag aaatgcgaag tttttgatga
      241 tgaagaagaa agcaagttga cctatacaga aatccatcaa gagtacaaag agctggttga
      301 aaagctgtta gaaagttacc tcaaagaaat tggaattaat gaagatcagt ttcaagaagc
      361 atgcacttcc cctctggcaa agacgcgcac atcacaggcc attttgcagc ctgtgttggc
      421 agcagaagat tttactatct ttaaagcaat gatggtccag aagaacattg aaatgcagct
      481 tcaagccatc cgaataatcc aggagagaaa tggtgtgtta cctgactgct taactgacgg
      541 ggcagatgtg gtcagtgatc ttgaacaaga agagatgaaa attctaagag aggtcctcag
      601 aaaatcaaaa gaagaatatg accaggagga ggaaaggaaa cgaaaaaagc agtcatcaga
      661 gggtaaaatg gaagaaccgc ccatatacac tagcgaaact gcaaaactga ctaactccca
      721 aggggatggt gagcactttg tacagccgtc ctcagaagtt aaagtgcatt ttactaatca
      781 gtcagtacaa cccttggcaa gaaagatgga gttgttgcct gaaacttcct cactcacaca
      841 gaaaggtctg aagatccctg gcttagagca tgcaagcatg gaaggaccaa tagcaaattt
      901 gtcagcactt ggaacagaag agttacgtca acgagagcac tatctcaagc agaagagaga
      961 taagctgatg tccatgagaa aggatatgag ggcaaagcag atccagaata ctgagcaaaa
     1021 aggaaagcct accagggagg cggaggaaat gacagagaag ccagaaatga cagcagagga
     1081 gaaacaaact ttactaaaga ggagattgct tgcagagaaa cttaaagaag aagttattaa
     1141 taagtaatgt gaaaaactag caaaacagaa acccaaattt tcttaaaaat aaattattta
     1201 atccttaaag actattagtt tcaagcaaat acttggtttt ctaaatgcaa ctgtgaacta
     1261 ttattaaaca ggtaaagggc aagaggtatg gtggtgcatg cctataatcc tagcacccac
     1321 gctaggatgc tgaaggagga ggatcaggag ctcttggtcc tttccagtgt cagagcaaat
     1381 tggaggccag cctaggttac atgaatctgt ctcaaataac caaaataaat aaatttaaaa
     1441 ataaaa
//
