LOCUS       XM_039092653             889 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus cilia and flagella associated protein
            299 (Cfap299), transcript variant X1, mRNA.
ACCESSION   XM_039092653
VERSION     XM_039092653.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051349.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039092653.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..889
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..889
                     /gene="Cfap299"
                     /note="cilia and flagella associated protein 299; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 7 ESTs, 2 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 52 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:685158"
                     /db_xref="RGD:1597725"
     CDS             48..749
                     /gene="Cfap299"
                     /codon_start=1
                     /product="cilia- and flagella-associated protein 299
                     isoform X1"
                     /protein_id="XP_038948581.1"
                     /db_xref="GeneID:685158"
                     /db_xref="RGD:1597725"
                     /translation="MDQDDGMTALDNIVTQFNTYEDFLDSQITTVDLYYLEDEGLARQ
                     LVELGYRGTGEIVKREDFEARKAAIDIARQAERTQKKTLTSAGKDLHDNFLKALAMRE
                     EDNRTGKLSTVIFIRDKNSHGQEVSGYIDYAHRLKSEDFEVYFNGKRRLLPRTTDMSF
                     YNWDSHIAVCNSSPNYQVIADNPEGLLFKYKRDRKILNVDPKAHPGDNSTRIPIQTDL
                     YTHAVLFDHVSRRKT"
ORIGIN      
        1 tcggccccgc ccacaccggt tactagggac gcgtcggtgt agccgcgatg gatcaggacg
       61 atggaatgac ggccttggac aacatcgtca cgcagttcaa cacctacgaa gacttcctgg
      121 actcgcagat cactacggtc gacctgtact acctggagga cgaaggcctg gctcgacaat
      181 tggtggagct aggctaccgt gggacagggg aaatcgtgaa aagggaagac ttcgaagcga
      241 gaaaggcagc cattgatatt gcgagacagg ctgaaagaac gcagaaaaag acactgacaa
      301 gtgctggtaa ggacctgcac gataacttcc tgaaagccct ggccatgagg gaagaggaca
      361 atcgcaccgg gaaactgagc acggtgatct tcattcgtga caaaaattct catgggcagg
      421 aagtgtcagg atatatcgac tatgctcaca gactaaaatc tgaagatttt gaagtctact
      481 ttaatgggaa aagaagactt cttccaagga ccacggacat gagcttttac aactgggaca
      541 gtcatattgc tgtttgcaat tcaagtccaa attaccaggt gattgctgac aaccccgaag
      601 gcttactttt caaatataag agagacagaa aaatcctcaa tgtggaccca aaggcccatc
      661 caggtgacaa ctcgacccgg atccctatcc agacagacct ctacacacat gctgttctct
      721 ttgaccacgt ttcccgaagg aagacttaaa cactgcacag taaatggctt ccttattgtt
      781 tgctacattt aaatgaattc cttggtcaga agcaaagtgg aatcataaat gagctgtata
      841 gctagaaggc acattagaat aataaaagtt aacaaagaca gaaaactaa
//
