LOCUS       XM_039091278            4150 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus cilia and flagella associated protein
            221 (Cfap221), transcript variant X1, mRNA.
ACCESSION   XM_039091278
VERSION     XM_039091278.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051348.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039091278.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4150
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="13"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4150
                     /gene="Cfap221"
                     /note="cilia and flagella associated protein 221; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 3 ESTs, 3 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 5 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:313149"
                     /db_xref="RGD:1584968"
     CDS             1467..3977
                     /gene="Cfap221"
                     /codon_start=1
                     /product="cilia- and flagella-associated protein 221
                     isoform X1"
                     /protein_id="XP_038947206.1"
                     /db_xref="GeneID:313149"
                     /db_xref="RGD:1584968"
                     /translation="MAAVKSPMQELKNANEPFDTMSPILLKSLVEEPKKRTEVPNHLL
                     ESKVYAKLLNNKVIQARPGIVHFGGYTIEKEHQQILNIANISDEDTHLHILPPQTKYF
                     QISFEKKEHRLIPGLSLTVTITFSPDEWRYYYDCIRIHCKGDDTLLVPIHAYPVLNDL
                     DFPTFINLSDVLLGESKSYVIPLQCSCPVDFEFHITLLRSHQAFTIEPKSGIIPANGE
                     ARVTVTFTPIQYGIAQIKIQLWISQFNSQPYECVFTGTCHPNIALPLEEFKRLNDRSK
                     KVNVPLEKTAYVQFYPTVAQAKKPQKLKEIDYQDLRFPADLSNPFAVATVLNQEAGKM
                     KIKDLKQVLDQGDEVSKTKQMKEAIFEQKVRQDIVTEIENHLKWQVHLGKEHTTYKFK
                     KELIEERQKAREKYKQNRGDPIIGEELQRLQMKQSKKRIVHNLEEKVQEFHANFDPLI
                     NNMWLSRHRAQRRFQQAARKIMLERRLLLMLCAIREMDKEGIMRKLVQVKRSLVQAEN
                     PYRSLKVRVSQDDNLWPYSLQPEEVLHFAFPTDSQSYNELALDGLGLVPIKSSDIQIK
                     HNYPFFTLKVPQLYKIKGYHPFSVNKSSTNYRLQKLARPLKHGAEDEVTTIITLPKKN
                     TVQVSEKPSILSMKPPEGLAMSVEYDPLYIFNPSPGLFTMKHPLTYEETLIDYHLCTH
                     PKYKYTQEPHQGSSIPLTQKQFLHHTDIIPGIMNWKKFQPLVFSSMSESSKENTQRSD
                     WYSPVMLPIDIPSPLEDLPEEDRLETTERDLCDQDIEVMLTPEMIQVEFPILTHRDSK
                     KEKDFKDPTQLPEKVGEKVQEEMKNLRNKALNTYLILD"
ORIGIN      
        1 cccagtcccg agatgaaggt ttttttatag gtaggaatgg tggtaaggag agaggggaaa
       61 gcagaaccaa accaaaccaa caaaaaacaa tgaacctttc cagatggggt aagggctaca
      121 cacccagcgc cacagatgca ggaagtagac agtaaatagg aggttagaca tcatctagtc
      181 tctataatcc agagtctccc catatgtgac tgtaaataac atcaagtttc aagtcataca
      241 gggaaagaga gagaccaaaa gagaaaccgg aaagagaatt ttgaatggac gctgtaaact
      301 tccggtgctt ttggattaga cttaaagtct tccccacagg taggaattca ggcctggtgc
      361 tgtgaaccca gtcaaaagct ggtgcctgct gggtcagcgc tctaaggact actgctgttt
      421 tgcgaaaccg catgttgcca aactgccttc tagatatttg tgcttatgcc catgggttag
      481 tagagcctta accttggtcg gagaagatgc gatgctctct gtagtccgca ccaatttatg
      541 cagagattcc taagtggtca gagcgcttag aataagcacc tactgagtgt tcagcctaag
      601 cagaaatctg tgtcaaccca atgctcaagg aaatcaaaga agtggggcgg aaagagtgac
      661 gagccagtgg gaggaaggaa ggagtgctgt gaactccctg cagctgtggt tatctgcgtc
      721 agccttgcgc aagtcaggtc agccttccag caggggacgc taattggagt cagtgggcta
      781 ttaacaaaag atgatgtggc gagggagggg atgcattgag ggctcttggt ccgggttggg
      841 gtgcatataa tcgagatacg tttacaagta taaaattgtc aaagaagaaa taaaagatat
      901 atactatttt ttaaaaaata tgcaagagaa tgtgggaatt tcttcaaaat aatggaaagt
      961 gcaactgaaa ctagattggc tgagatttga ccatggttgc agcgggagaa ggggagcttc
     1021 tctttagcat attgcctaac tctgctagtg tacgaacttt accatgaatc gaagtgtaaa
     1081 actgggaggg gactggacag gaggtcccgc ccactgtgcc ggggccccgc ccccatctgc
     1141 tcaggcaagc tgcccagccc gcagggtggc taaactttct ccgctcctct gggactccat
     1201 tagttttcca catagtaagt ggcgctttct ggtctttctc aagctccgca tattgttcaa
     1261 agaagtcaac cctcgcccca gaacagaaac cgccaacttc ccccacgttt gggggccgtt
     1321 tgggcgcgtt ccccagcata tcctgggaaa gcgtccgcgt tgtcatggcg acgctctgag
     1381 taggttcctg cgcgcccgcc ccggaactat catttgcagg gaaataacct ttgactctag
     1441 acagacagct ccatttttca cgagagatgg cagctgtgaa aagccccatg caggaactaa
     1501 agaacgcaaa tgaacccttt gatacgatgt cacccatcct cttgaagagc ctggtggagg
     1561 agcccaagaa gagaactgag gtgcctaacc accttctgga atctaaggtt tacgccaagc
     1621 tgctgaacaa caaggtcatc caggccagac caggcatagt ccattttgga ggctatacga
     1681 tagaaaaaga gcaccaacag atcctgaata tcgccaatat ttcggatgaa gacacacacc
     1741 ttcatatttt acctccacaa accaaatact ttcagatcag ctttgagaag aaggagcatc
     1801 gcctcatccc aggcttgtca ctcacggtca ctattacatt ttctccagat gagtggcgtt
     1861 actattatga ctgcatccgc attcactgta agggagatga caccttgctt gtccccattc
     1921 atgcctaccc tgtcttgaat gacctggact ttcccacgtt tataaatcta tcagatgtcc
     1981 tccttggaga gagcaaaagc tatgtgatcc ccttgcagtg cagctgcccc gtggatttcg
     2041 aattccatat cacgttgctt cggtctcatc aagcctttac gattgagcca aagtcaggaa
     2101 taattccagc taacggggag gcaagagtaa ctgtcacgtt cacgcccatc cagtatggga
     2161 tagcacaaat aaaaattcag ttgtggatct cacagttcaa ctctcagcca tacgaatgcg
     2221 tcttcactgg aacctgccac cccaacatcg ccttaccatt agaagagttt aaacgattaa
     2281 atgaccgttc taagaaagta aatgttcctc tagaaaaaac agcatacgtg caattttacc
     2341 caactgtggc acaggcaaaa aaacctcaga agttaaagga aatcgattat caggacctgc
     2401 ggtttccagc cgacctgtca aatccattcg ccgtggcgac cgtcctaaac caggaagccg
     2461 ggaagatgaa gattaaggac ttaaaacaag tcctggacca aggtgacgaa gtctccaaaa
     2521 ccaagcagat gaaggaggcg atctttgagc agaaagtcag acaggacatc gtgacagaga
     2581 tcgagaacca tcttaagtgg caggtgcacc ttggcaaaga gcacacaact tacaagttta
     2641 aaaaagagct cattgaggag cggcaaaaag cacgtgagaa atacaagcaa aacagaggcg
     2701 accctatcat aggggaggag cttcaacgac tccagatgaa acagagcaag aagcgcatcg
     2761 tccacaactt ggaggagaaa gtccaggaat tccatgctaa tttcgatcca ctcattaata
     2821 acatgtggct gagcagacac cgggcacaaa gacgatttca gcaagcagca cgcaagatca
     2881 tgcttgaacg aaggttactt cttatgctgt gtgccatccg tgaaatggac aaagaaggca
     2941 tcatgagaaa gcttgtccaa gtcaagcggt cgctggtaca agcagagaat ccctaccggt
     3001 ccctgaaggt ccgggtgagt caggatgaca acctctggcc ctactcacta cagcctgagg
     3061 aagtgctaca cttcgccttc ccaacagact cgcagagcta caatgagctg gctcttgatg
     3121 gccttggact agtcccaatt aagtcttcgg acattcaaat caagcacaat tatcccttct
     3181 tcactttaaa ggttccacag ttatataaaa tcaagggata tcacccattt tctgtcaaca
     3241 agtcctcaac aaattacaga cttcagaaac ttgcacgacc actgaagcat ggtgctgagg
     3301 atgaagtcac caccatcata accctaccca agaagaacac cgtacaggtc tcagagaagc
     3361 cctccatctt gagtatgaag ccacctgagg gcttggccat gtctgtagaa tatgacccgc
     3421 tgtatatttt caaccccagc ccaggactgt ttactatgaa gcatcctctg acctatgaag
     3481 aaacgctgat agattaccat ctgtgcactc accccaagta caagtacacc caggagcccc
     3541 accaggggtc cagcattcct cttacccaaa agcagtttct ccatcacacg gatataattc
     3601 ctggaatcat gaactggaag aagttccagc ccctggtatt ctcctccatg tctgagtcct
     3661 ctaaggaaaa cactcagaga agtgactggt acagccctgt gatgctaccc atagatatcc
     3721 cctccccact ggaggactta ccagaagagg acagattgga aactactgag cgagatctct
     3781 gtgatcagga tatagaagtc atgctgactc cagaaatgat ccaagtggaa ttccccatcc
     3841 tgacccacag ggactccaag aaggagaagg atttcaaaga cccgacccag ttaccagaga
     3901 aggtgggaga aaaggtacag gaggagatga agaatctgag aaacaaagct ctcaacacat
     3961 acctgattct agactaaacc ccatgctgtg cccgtggctc ccctcgcctt ccaaggtcac
     4021 tgaggtcctc agagtccact tacattcgag ctacttttgc aattaaagtt tctagagaca
     4081 agaattaaaa tgcagatgcc ctgctttaaa ctatgttttt ctttttgaaa ataaaaatat
     4141 tctgttatga
//
