LOCUS       NM_001014137            2306 bp    mRNA    linear   ROD 27-FEB-2025
DEFINITION  Rattus norvegicus CFAP20 domain containing (Cfap20dc), transcript
            variant 2, mRNA.
ACCESSION   NM_001014137 XM_341291
VERSION     NM_001014137.2
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2306)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BC098040.1.
            
            On Jul 17, 2005 this sequence version replaced NM_001014137.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC098040.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760434
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..2306
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="15"
                     /map="15p14"
     gene            1..2306
                     /gene="Cfap20dc"
                     /note="CFAP20 domain containing"
                     /db_xref="GeneID:361016"
                     /db_xref="RGD:1359720"
     exon            1..239
                     /gene="Cfap20dc"
                     /inference="alignment:Splign:2.1.0"
     CDS             219..2195
                     /gene="Cfap20dc"
                     /note="isoform 2 is encoded by transcript variant 2;
                     uncharacterized protein C3orf67 homolog; protein CFAP20DC"
                     /codon_start=1
                     /product="protein CFAP20DC isoform 2"
                     /protein_id="NP_001014159.2"
                     /db_xref="GeneID:361016"
                     /db_xref="RGD:1359720"
                     /translation="MFKNEYQGGAFVEIFSAQGKNPGAKWKILGSPSVIWKEFDKEVK
                     SFVFVLEGSSQTNRIQLPKENKQILGLIQRFLVLQIYVPLGQDFSTELLITDLGNIKR
                     RLYLSTVHKEVSSTPLHAKIPLFMIKRKIWCNLCIDLVAFTSEIFKGAVFQSLDGIIV
                     SANCKLRKIFTLKFKPRETADRDDEPADIIPRSCQLATDVPHVTQLLNMTKLRQTEIK
                     FGGHPLRSAESDQFISSRAGSVRSSKSQDVCHIAFGSRVLGPPPPSGRRNNLRLSAET
                     VRSIGYKNNQSCQQPAEEKHVNSADTSALLIPLSEQQGEKGSSHPVKQTTPLPASLPT
                     PYPHPPRDPSADKGSSRRGLGLRSSSGSRTEARCGSSSGNSRSEEDVAMAANNLTQLT
                     TEPVRASTPEPPAAEPPDEWIFPESSGPPSGAAGSSSSLLLDGDSRTASHLWLETSKD
                     SDPDQAEGTQMAPKDIFTFSSRPRSAPHGKSHDLSPTGCPCILDPKEDSRVTKGDTEL
                     EDDFYGSDSSEEEYNWRNYQPSQMSESELQMLASLRRQQNEDLEDTGAPHGLSASQVD
                     NCNVSISTSSDDTTTWNSCLPPPVNQGRHYQKEMNPPSPSNPRDWLNMLSPPIVPPSQ
                     QPLEQSLDSSASLSVQGGALLLTQPHLASCAVGC"
     exon            240..329
                     /gene="Cfap20dc"
                     /inference="alignment:Splign:2.1.0"
     exon            330..423
                     /gene="Cfap20dc"
                     /inference="alignment:Splign:2.1.0"
     exon            424..496
                     /gene="Cfap20dc"
                     /inference="alignment:Splign:2.1.0"
     exon            497..611
                     /gene="Cfap20dc"
                     /inference="alignment:Splign:2.1.0"
     exon            612..768
                     /gene="Cfap20dc"
                     /inference="alignment:Splign:2.1.0"
     exon            769..906
                     /gene="Cfap20dc"
                     /inference="alignment:Splign:2.1.0"
     exon            907..1043
                     /gene="Cfap20dc"
                     /inference="alignment:Splign:2.1.0"
     exon            1044..1206
                     /gene="Cfap20dc"
                     /inference="alignment:Splign:2.1.0"
     exon            1207..1323
                     /gene="Cfap20dc"
                     /inference="alignment:Splign:2.1.0"
     exon            1324..1446
                     /gene="Cfap20dc"
                     /inference="alignment:Splign:2.1.0"
     exon            1447..1778
                     /gene="Cfap20dc"
                     /inference="alignment:Splign:2.1.0"
     exon            1779..1982
                     /gene="Cfap20dc"
                     /inference="alignment:Splign:2.1.0"
     exon            1983..2044
                     /gene="Cfap20dc"
                     /inference="alignment:Splign:2.1.0"
     exon            2045..2139
                     /gene="Cfap20dc"
                     /inference="alignment:Splign:2.1.0"
     exon            2140..2282
                     /gene="Cfap20dc"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cacagtcact ctgtcggcgg agcccgcagg ccgctgtgcc atccctgccg cggctccccg
       61 agccgggacc accatggcgc gggtcggcgg ctggaggctc agctgactgc aggcgcgagg
      121 taccgaggcg agcccgagcc agcgggcaca gagccagctc tgccggtcca tctccagccg
      181 gcaaactctg cctgccaaac ccagggccct ctgcgggaat gttcaaaaat gagtaccagg
      241 gaggcgcatt tgttgaaatt tttagcgctc aggggaaaaa tcctggagca aagtggaaga
      301 tcttgggcag tccatctgtg atctggaaag agtttgataa agaagttaaa agctttgtgt
      361 ttgtcctgga aggcagcagc caaaccaaca gaatccagtt gccgaaggag aataagcaaa
      421 tccttggact gatccagagg tttcttgtgc tacagattta cgtgcccctg ggacaggact
      481 tctccaccga attactaatt actgacttag gaaacatcaa aagaaggttg tatttatcaa
      541 cagtccataa ggaagtgtct tcaacacctc ttcacgcaaa aatcccactc ttcatgatca
      601 agcgtaaaat ctggtgcaat ctgtgcattg acctggtcgc cttcaccagt gagatattca
      661 aaggagcagt tttccagtcg ctggatggaa ttatcgtctc tgctaactgt aagctgcgga
      721 agatcttcac tttgaaattc aagcctcgag agacggccga tagagacgat gaacccgcag
      781 atattattcc acgaagctgt caactcgcaa cagatgttcc gcatgtcaca cagctgctta
      841 acatgacaaa acttcgccaa actgaaatta aatttggagg tcatcctcta agatctgcag
      901 aatcagacca gttcatcagc agcagagcag gcagtgtccg gagcagtaaa agtcaagatg
      961 tctgccacat tgcctttggg tccagggttc ttggaccacc tccaccctct ggcagacgga
     1021 ataacctaag gctttccgct gagacagtga gatccattgg gtacaaaaat aaccagtcgt
     1081 gccagcagcc tgcggaagag aagcatgtta acagtgcaga cacatcagcc ttgctgatac
     1141 ctctgtctga acagcaagga gagaaaggaa gttctcaccc cgtgaagcag accacgcctc
     1201 tacctgccag tctccctact ccatatccac atccccctcg agacccgtca gcagataagg
     1261 gtagcagcag aagaggactt ggcctaagga gcagcagtgg aagcaggaca gaggcgcgct
     1321 gtgggagttc ctcaggaaat agcaggagtg aagaagacgt agccatggcc gccaacaatc
     1381 tcacacagct gacgacagag ccagtgagag ccagcactcc agaacccccg gctgctgaac
     1441 caccagatga gtggatattc cctgaaagca gtggcccacc ctccggcgca gcaggtagca
     1501 gctcatcttt gctcctagat ggggactccc gtaccgcatc acacctgtgg ctcgaaacca
     1561 gcaaggacag tgaccctgac caggcagagg gaacccagat ggctcccaag gacattttca
     1621 ccttttcgtc cagaccaaga tcagcgcctc atgggaagag tcacgatctg tcccccacgg
     1681 ggtgcccatg tattctggac ccaaaagagg acagccgagt gaccaaggga gacaccgagt
     1741 tggaagacga tttttatggc agtgacagca gcgaagagga atacaactgg agaaactatc
     1801 agcccagcca gatgagcgaa tctgagctac agatgctggc aagcctcagg cggcagcaga
     1861 atgaagacct agaggacacc ggggctcctc atggcctgag cgcatcccag gtggacaact
     1921 gtaatgtcag catcagtacc agcagcgatg acacgaccac gtggaactcc tgtctcccac
     1981 ctcctgtgaa ccaaggccgt cactatcaga aagaaatgaa ccccccttct ccatctaacc
     2041 ctcgagactg gttgaacatg ttgagcccac caattgtccc tcccagtcag cagccgctgg
     2101 agcagtctct ggactcctct gcaagtttga gtgtgcaagg aggagctctg ctactgactc
     2161 agccccacct cgcttcctgt gcagttgggt gttaaagacc cagggcccat ctcgggctat
     2221 gctcatcctg aaagatcccc agctggttgt aaaatgcatc gagtttgccc catttaacag
     2281 caaaaaaaaa aaaaaaaaaa aaaaaa
//
